ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY591425.1| Ateles geoffroyi SMCX (SMCX) gene, partial cds 42 1.5
2ref|XM_883242.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 6.1
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
4dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
5emb|AL627182.22| Mouse DNA sequence from clone RP23-32K12 on chr... 40 6.1

>gb|AY591425.1| Ateles geoffroyi SMCX (SMCX) gene, partial cds
          Length = 2869

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 401  ccccaaattcgagatcctcct 421
            |||||||||||||||||||||
Sbjct: 2035 ccccaaattcgagatcctcct 2015



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>ref|XM_883242.1| PREDICTED: Bos taurus hypothetical protein LOC617984 (LOC617984),
           partial mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 cgcggcgcttccttcccgga 319
           ||||||||||||||||||||
Sbjct: 644 cgcggcgcttccttcccgga 625



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 122      ccgctcctgcggttcgcaga 141
                ||||||||||||||||||||
Sbjct: 27016065 ccgctcctgcggttcgcaga 27016046



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>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461B08
          Length = 153743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ccgctcctgcggttcgcaga 141
             ||||||||||||||||||||
Sbjct: 69267 ccgctcctgcggttcgcaga 69248



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>emb|AL627182.22| Mouse DNA sequence from clone RP23-32K12 on chromosome 4, complete
              sequence
          Length = 241562

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     tcctgctgcggcttgctgcttctt 34
              ||||||||| ||||||||||||||
Sbjct: 175944 tcctgctgcagcttgctgcttctt 175967



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    tcctgctgcggcttgctgcttctt 34
             ||||||||| ||||||||||||||
Sbjct: 67996 tcctgctgcagcttgctgcttctt 68019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,603,848
Number of Sequences: 3902068
Number of extensions: 2603848
Number of successful extensions: 39540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39524
Number of HSP's gapped (non-prelim): 16
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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