ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal17o13 |
|---|---|
| Clone Library Name | barley_pub |
>MGAT3_HUMAN (Q09327) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 533 Score = 37.4 bits (85), Expect = 0.023 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%) Frame = +3 Query: 84 GGRFMKGENPFVEESYQRVALDQ--LLRIARIEDDDILIMSDVDEIPSGHTINLLRWCDD 257 GGR ++ ++ + Y R L Q + R+ + DD+ I+ D DEIP+ + L+ D Sbjct: 280 GGR----QDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDG 335 Query: 258 TPKIVHLQLRNYLYSF---------------------EFFLDDKSWRASIHRYVSGKTRY 374 + +R LY F + LD R + Y R Sbjct: 336 WTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTVDMLQAVYGLDGIRLRRRQY-YTMPNFRQ 394 Query: 375 AHFRQTDVL--------LADSGWHCSFCF 437 R +L L +GWHCS+CF Sbjct: 395 YENRTGHILVQWSLGSPLHFAGWHCSWCF 423
>MGAT3_RAT (Q02527) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 538 Score = 37.4 bits (85), Expect = 0.023 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%) Frame = +3 Query: 84 GGRFMKGENPFVEESYQRVALDQ--LLRIARIEDDDILIMSDVDEIPSGHTINLLRWCDD 257 GGR ++ ++ + Y R L Q + R+ + DD+ I+ D DEIP+ + L+ D Sbjct: 284 GGR----QDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDG 339 Query: 258 TPKIVHLQLRNYLYSF---------------------EFFLDDKSWRASIHRYVSGKTRY 374 + +R LY F + LD R + Y R Sbjct: 340 WTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTIDMLQAVYGLDGIRLRRRQY-YTMPNFRQ 398 Query: 375 AHFRQTDVL--------LADSGWHCSFCF 437 R +L L +GWHCS+CF Sbjct: 399 YENRTGHILVQWSLGSPLHFAGWHCSWCF 427
>MGAT3_MOUSE (Q10470) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 538 Score = 37.4 bits (85), Expect = 0.023 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%) Frame = +3 Query: 84 GGRFMKGENPFVEESYQRVALDQ--LLRIARIEDDDILIMSDVDEIPSGHTINLLRWCDD 257 GGR ++ ++ + Y R L Q + R+ + DD+ I+ D DEIP+ + L+ D Sbjct: 284 GGR----QDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDG 339 Query: 258 TPKIVHLQLRNYLYSF---------------------EFFLDDKSWRASIHRYVSGKTRY 374 + +R LY F + LD R + Y R Sbjct: 340 WTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTMDMLQAVYGLDGIRLRRRQY-YTMPNFRQ 398 Query: 375 AHFRQTDVL--------LADSGWHCSFCF 437 R +L L +GWHCS+CF Sbjct: 399 YENRTGHILVQWSLGSPLHFAGWHCSWCF 427
>RBL_CYAPA (P24312) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 475 Score = 32.3 bits (72), Expect = 0.74 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Frame = +3 Query: 3 WRDKALFFKENRHRFRFAESRLTYGTYGGRFMKGENPFVEESYQRVALDQLLRIARIEDD 182 WRD+ L+ + +S+ G G ++ P EE +R E D Sbjct: 214 WRDRFLYVMD-----AIKKSQAETGEIKGHYLNATAPTTEEMIKRAEF-------AAELD 261 Query: 183 DILIMSDVDEIPSGHTIN--LLRWCDDTPKIVHL 278 +IM D I +G T N L RWC D ++H+ Sbjct: 262 APIIMHDY--ITAGFTSNTTLARWCRDNGPLLHI 293
>BNC1_MOUSE (O35914) Zinc finger protein basonuclin-1| Length = 961 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -3 Query: 429 NCSATLNRQE--AHLSAENAHILSSQIRTCELTPSNSCHPEKTQMS 298 NC T+ ++E AHLS +++ ++S++ +L+P PE+ +S Sbjct: 274 NCPETVPQKEDSAHLSDSSSYSIASKLERTQLSPEAKVKPERNSLS 319
>DIPZ_MYCTU (Q10801) Protein dipZ| Length = 695 Score = 30.8 bits (68), Expect = 2.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 255 RRTISRD*WCGHLGFHQHLT 196 RR + R WCG G+H HLT Sbjct: 57 RRRLRRRRWCGRCGYHSHLT 76
>DIPZ_MYCBO (P59960) Protein dipZ| Length = 695 Score = 30.8 bits (68), Expect = 2.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 255 RRTISRD*WCGHLGFHQHLT 196 RR + R WCG G+H HLT Sbjct: 57 RRRLRRRRWCGRCGYHSHLT 76
>ARSA_METTH (O27555) Putative arsenical pump-driving ATPase (EC 3.6.3.16)| (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) Length = 324 Score = 30.4 bits (67), Expect = 2.8 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 96 MKGENPFVEESYQRVALDQLLRIARIEDDDILIMSDVDEIPSGHTINLL 242 M +P ++E+ A DQ LR ++ DI+I D P+GHT+ LL Sbjct: 114 MASMSPGIDEA---AAFDQFLRYMTTDEYDIVIF---DTAPTGHTLRLL 156
>RBL_ANASP (P00879) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 476 Score = 29.6 bits (65), Expect = 4.8 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Frame = +3 Query: 3 WRDKALFFKENRHRFRFAESRLTYGTYGGRFMKGENPFVEESYQRVALDQLLRIARIEDD 182 WRD+ LF + +++ G G ++ P EE +R + L+ Sbjct: 215 WRDRFLFVAD-----AITKAQAETGEIKGHYLNVTAPTCEEMLKRAEYAKELK------- 262 Query: 183 DILIMSDVDEIPSGHTIN--LLRWCDDTPKIVHL 278 +IM D + +G T N L RWC D ++H+ Sbjct: 263 QPIIMHDY--LTAGFTANTTLARWCRDNGVLLHI 294
>SYR_STRMU (Q8DRW2) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +3 Query: 351 YVSGKTRYAHFRQTDVLLADSGWHCSFCFRHIS 449 YV G+ + AHF+Q +LA+ G+ S +H+S Sbjct: 329 YVVGQEQTAHFKQLKAVLAEMGYAWSKDIQHVS 361
>RBL1_RHOCA (O32740) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 28.9 bits (63), Expect = 8.2 Identities = 23/92 (25%), Positives = 37/92 (40%) Frame = +3 Query: 3 WRDKALFFKENRHRFRFAESRLTYGTYGGRFMKGENPFVEESYQRVALDQLLRIARIEDD 182 WRD+ LF +E ++ G G +M +EE Y+R + E Sbjct: 207 WRDRFLFCQE-----AIQKAEAETGERKGHYMNVTAGTMEEIYERAEFAK-------EIG 254 Query: 183 DILIMSDVDEIPSGHTINLLRWCDDTPKIVHL 278 +IMSD + +L RWC ++H+ Sbjct: 255 TPIIMSDYLTVGWAAHTSLSRWCRKNGMLLHV 286
>MOBA_MYCTU (P65402) Probable molybdopterin-guanine dinucleotide biosynthesis| protein A Length = 201 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 349 GTYLGRQDMRIFGRQMCFLPIQGGTAVFVSGTSVILSSRC 468 G L + R GR LP+ GGT V IL RC Sbjct: 13 GVVLAGGESRRMGRDKATLPLPGGTTTLVEHMVGILGQRC 52
>MOBA_MYCBO (P65403) Probable molybdopterin-guanine dinucleotide biosynthesis| protein A Length = 201 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 349 GTYLGRQDMRIFGRQMCFLPIQGGTAVFVSGTSVILSSRC 468 G L + R GR LP+ GGT V IL RC Sbjct: 13 GVVLAGGESRRMGRDKATLPLPGGTTTLVEHMVGILGQRC 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,165,665 Number of Sequences: 219361 Number of extensions: 1636962 Number of successful extensions: 3953 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3951 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
