>BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 693

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +3

Query: 228 LEEIRQKRAAERMQQQQTPAATASH-GDPHGNQRAAAELLARVXXXXXXXXXXXXXXXML 404
           +EE+   +     +  QT    ++   + H N+    +LL ++                 
Sbjct: 270 IEELENYKQLNEKELAQTRLEISNLLSEKHSNEEEREDLLHQIEKLKASNTDLTLTNESF 329

Query: 405 MSKFAEKEVEKDSLVSRLNDLEKNVVPSLKKSLNDISLEKD 527
           +SKF E   EKD+   +++   +  + SLK    +++LEKD
Sbjct: 330 LSKFQELAKEKDTFQEKISSDFEKTLESLK--AQNLALEKD 368

>XAG2_XENLA (P55869) Probable secreted protein XAG-2 precursor (Secreted|
           protein np77)
          Length = 185

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -3

Query: 283 GVCCCCILSAALFCRISSSCHTRNRDRSLGHQKLTGEARRGSEPPPASRKGKKVKSGGWR 104
           G+   C++   L C +      R   R  G     G A+  SEP P   KG K    GW 
Sbjct: 4   GLSLACLV---LLCSVLGEAALRKPKRQAGATDTNGAAK--SEPAPVKTKGLKTLDRGWG 58

Query: 103 E 101
           E
Sbjct: 59  E 59

>HIP1_HUMAN (O00291) Huntingtin-interacting protein 1 (HIP-I)|
          Length = 1030

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/60 (31%), Positives = 36/60 (60%)
 Frame = +3

Query: 408 SKFAEKEVEKDSLVSRLNDLEKNVVPSLKKSLNDISLEKDAAVIAKEDALAQLRSMKKRL 587
           ++FAE E E+DSLVS     E+  + +L+K L D  L+    + + E+++ QL   ++++
Sbjct: 561 AEFAELEKERDSLVSGAAHREEE-LSALRKELQDTQLK----LASTEESMCQLAKDQRKM 615

>TWST1_PONPY (Q8MIB9) Twist-related protein 1|
          Length = 203

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 157 EPPPASRKGKKVKSGGWREAYGAAAPGG 74
           +PP   R G+K +S   R A G A PGG
Sbjct: 28  QPPSGKRGGRKRRSSSRRSAGGGAGPGG 55

>CLPB_CHLMU (Q9PKS5) Chaperone clpB|
          Length = 867

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = +3

Query: 411 KFAEKEVEKDSLVSRLNDLEKNVVPSLKKSL 503
           KFAE+E E+ +  +R+ +L  +++PSL+K +
Sbjct: 482 KFAEEEAERTADYNRVAELRYSLIPSLEKEI 512

>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 691

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 408 SKFAEKEVEKDS-LVSRLNDLEKNV---VPSLKKSLNDISLEKDAAVIAKEDALAQLRSM 575
           +K  + ++ K   LVS+LNDLEK+    +  L KS ND  + + +A+         LR++
Sbjct: 499 NKILKTQINKSQELVSKLNDLEKSYLDKIEILTKSNNDFKIIRQSALQENSKLQESLRAI 558

Query: 576 KKR 584
             R
Sbjct: 559 DVR 561

>SORC1_HUMAN (Q8WY21) VPS10 domain-containing receptor SorCS1 precursor (hSorCS)|
          Length = 1168

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 22   PSSRPGRSIARRDGVSPRLQGPPHRTPPSTPR 117
            PS++PG S       S RLQ   H TPPSTP+
Sbjct: 1134 PSTQPGDS-------SLRLQRARHATPPSTPK 1158

>Y1882_ARCFU (O28397) Hypothetical protein AF1882 precursor|
          Length = 198

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -1

Query: 522 SPVRCHLETSSTRALHFSR-GHLIG*PGNPFQLPSQQTWTSAF-----GFPSPIP 376
           SPV+ HL  S  R+L F R GH+        Q+  Q T+ S F      +PSP+P
Sbjct: 103 SPVQRHLSISIFRSLPFLRMGHMT-------QMAGQATFQSPFSGASLSYPSPLP 150

>SMBT2_HUMAN (Q5VUG0) Scm-like with four MBT domains protein 2|
          Length = 894

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 19  LPSSRPGRSIARRDGVSPRLQGPPHRT 99
           +PS+RP R++  R G  P  + PP RT
Sbjct: 752 VPSARPRRAVTLRSGSEPVRRPPPERT 778

>MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1959

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 24/123 (19%), Positives = 49/123 (39%)
 Frame = +3

Query: 219  VWQLEEIRQKRAAERMQQQQTPAATASHGDPHGNQRAAAELLARVXXXXXXXXXXXXXXX 398
            +  LEE  + R  E+ +Q+         GD        AEL A++               
Sbjct: 1029 ITDLEE--RLRREEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQ 1086

Query: 399  MLMSKFAEKEVEKDSLVSRLNDLEKNVVPSLKKSLNDISLEKDAAVIAKEDALAQLRSMK 578
              +++  E+  +K+  + ++ +LE  +   L++ L      ++ A   K D   +L ++K
Sbjct: 1087 AALARVEEEAAQKNMALKKIRELESQIT-ELQEDLESERASRNKAEKQKRDLGEELEALK 1145

Query: 579  KRL 587
              L
Sbjct: 1146 TEL 1148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,325,607
Number of Sequences: 219361
Number of extensions: 1536791
Number of successful extensions: 6031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6008
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)