ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal17n24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022G07, full insert sequence Length = 1645 Score = 260 bits (131), Expect = 5e-66 Identities = 329/395 (83%) Strand = Plus / Plus Query: 228 ctggaggagatccggcagaagagggcggccgagaggatgcagcagcagcaaacgcccgcc 287 ||||||||||||||||||||||| || ||||||||||||||||||||||| | || ||| Sbjct: 187 ctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggcc 246 Query: 288 gcgaccgcgtcccacggcgaccctcacgggaaccaaagagccgcggcagagctccttgct 347 || | ||||||| | ||||||| ||||||||| | |||||| || ||||| |||| | Sbjct: 247 gccgcggcgtcccttgtcgacccttacgggaacccaggagccggagctgagcttcttggt 306 Query: 348 cgagttcaacaacttgagaatgggaacttggaattggagagggaaaaccaaatgctgatg 407 |||||| | ||||||| ||||||||| | | ||||||||||||||||||||||||| | Sbjct: 307 cgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgtta 366 Query: 408 tccaagtttgctgagaaggaagttgaaaaggattccctggttagccgattaaatgacctc 467 |||||| |||||||||||||||| || ||||||||||| |||| ||| || || ||||| Sbjct: 367 tccaagattgctgagaaggaagtcgagaaggattccctcgttaaccgcttgaacgacctt 426 Query: 468 gagaaaaatgtagtgccctcgttgaagaagtctctaaatgacatctcactggagaaagac 527 ||| ||| |||| ||||| ||||| ||| || | |||||||| || |||||||||| Sbjct: 427 gagcggaatatagtaccctccttgaaaaaggctgtgaatgacatttctttggagaaagat 486 Query: 528 gctgcagttatcgctaaggaggatgctctagcgcaactcaggagcatgaagaagcggttg 587 || |||| | | ||||||||||||||||| || ||||| |||||||||||||| || || Sbjct: 487 gccgcagctgttgctaaggaggatgctctcgcacaactaaggagcatgaagaaacgactg 546 Query: 588 agagaggcagaagaggaacagtacagggcagaaga 622 | |||||||||||||| || |||||||||||||| Sbjct: 547 aaggaggcagaagaggagcaatacagggcagaaga 581
>ref|NM_187477.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1239 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Plus Query: 228 ctggaggagatccggcagaagagggcggccgagaggatgcagcagcagcaaacgcccgcc 287 ||||||||||||||||||||||| || ||||||||||||||||||||||| | || ||| Sbjct: 37 ctggaggagatccggcagaagagagccgccgagaggatgcagcagcagcacaacccggcc 96 Query: 288 gcgaccgcgtcccacggcgaccctcacgggaaccaaagagccgcggcagagctccttgct 347 || | ||||||| | ||||||| ||||||||| | |||||| || ||||| |||| | Sbjct: 97 gccgcggcgtcccttgtcgacccttacgggaacccaggagccggagctgagcttcttggt 156 Query: 348 cgagttcaacaacttgagaatgggaacttggaattggagagggaaaaccaaatgctgatg 407 |||||| | ||||||| ||||||||| | | ||||||||||||||||||||||||| | Sbjct: 157 cgagttagagaacttgaaaatgggaacatagcattggagagggaaaaccaaatgctgtta 216 Query: 408 tccaag 413 |||||| Sbjct: 217 tccaag 222
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 222 tggcagctggaggagatccggcagaagagggcggccgagaggatgcagcagcagca 277 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 8867439 tggcagctggaggagatccggcagaagagagccgccgagaggatgcagcagcagca 8867384 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 337 agctccttgctcgagttcaacaacttgagaatgggaacttggaattggagagggaaaacc 396 |||| |||| ||||||| | ||||||| ||||||||| | | ||||||||||||||||| Sbjct: 8867124 agcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaacc 8867065 Query: 397 aaatgctgatgtccaag 413 |||||||| | |||||| Sbjct: 8867064 aaatgctgttatccaag 8867048 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 544 aggaggatgctctagcgcaactcaggagcatgaagaagcggttgagagaggcagaagagg 603 ||||||||||||| || ||||| |||||||||||||| || ||| ||||||||||||| Sbjct: 8866643 aggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagagg 8866584 Query: 604 aacagtacaggg 615 | || ||||||| Sbjct: 8866583 agcaatacaggg 8866572 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 415 ttgctgagaaggaagttgaaaaggattccctggtta 450 |||||||||||||||| || ||||||||||| |||| Sbjct: 8866964 ttgctgagaaggaagtcgagaaggattccctcgtta 8866929
>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02, complete sequence Length = 126027 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 222 tggcagctggaggagatccggcagaagagggcggccgagaggatgcagcagcagca 277 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 58327 tggcagctggaggagatccggcagaagagagccgccgagaggatgcagcagcagca 58272 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 337 agctccttgctcgagttcaacaacttgagaatgggaacttggaattggagagggaaaacc 396 |||| |||| ||||||| | ||||||| ||||||||| | | ||||||||||||||||| Sbjct: 58012 agcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaacc 57953 Query: 397 aaatgctgatgtccaag 413 |||||||| | |||||| Sbjct: 57952 aaatgctgttatccaag 57936 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 544 aggaggatgctctagcgcaactcaggagcatgaagaagcggttgagagaggcagaagagg 603 ||||||||||||| || ||||| |||||||||||||| || ||| ||||||||||||| Sbjct: 57531 aggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagagg 57472 Query: 604 aacagtacaggg 615 | || ||||||| Sbjct: 57471 agcaatacaggg 57460 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 415 ttgctgagaaggaagttgaaaaggattccctggtta 450 |||||||||||||||| || ||||||||||| |||| Sbjct: 57852 ttgctgagaaggaagtcgagaaggattccctcgtta 57817
>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02, complete sequence Length = 112265 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 222 tggcagctggaggagatccggcagaagagggcggccgagaggatgcagcagcagca 277 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 110592 tggcagctggaggagatccggcagaagagagccgccgagaggatgcagcagcagca 110537 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 337 agctccttgctcgagttcaacaacttgagaatgggaacttggaattggagagggaaaacc 396 |||| |||| ||||||| | ||||||| ||||||||| | | ||||||||||||||||| Sbjct: 110277 agcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaacc 110218 Query: 397 aaatgctgatgtccaag 413 |||||||| | |||||| Sbjct: 110217 aaatgctgttatccaag 110201 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 544 aggaggatgctctagcgcaactcaggagcatgaagaagcggttgagagaggcagaagagg 603 ||||||||||||| || ||||| |||||||||||||| || ||| ||||||||||||| Sbjct: 109796 aggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagagg 109737 Query: 604 aacagtacaggg 615 | || ||||||| Sbjct: 109736 agcaatacaggg 109725 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 415 ttgctgagaaggaagttgaaaaggattccctggtta 450 |||||||||||||||| || ||||||||||| |||| Sbjct: 110117 ttgctgagaaggaagtcgagaaggattccctcgtta 110082
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 222 tggcagctggaggagatccggcagaagagggcggccgagaggatgcagcagcagca 277 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 8865274 tggcagctggaggagatccggcagaagagagccgccgagaggatgcagcagcagca 8865219 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 337 agctccttgctcgagttcaacaacttgagaatgggaacttggaattggagagggaaaacc 396 |||| |||| ||||||| | ||||||| ||||||||| | | ||||||||||||||||| Sbjct: 8864959 agcttcttggtcgagttagagaacttgaaaatgggaacatagcattggagagggaaaacc 8864900 Query: 397 aaatgctgatgtccaag 413 |||||||| | |||||| Sbjct: 8864899 aaatgctgttatccaag 8864883 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 544 aggaggatgctctagcgcaactcaggagcatgaagaagcggttgagagaggcagaagagg 603 ||||||||||||| || ||||| |||||||||||||| || ||| ||||||||||||| Sbjct: 8864478 aggaggatgctctcgcacaactaaggagcatgaagaaacgactgaaggaggcagaagagg 8864419 Query: 604 aacagtacaggg 615 | || ||||||| Sbjct: 8864418 agcaatacaggg 8864407 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 415 ttgctgagaaggaagttgaaaaggattccctggtta 450 |||||||||||||||| || ||||||||||| |||| Sbjct: 8864799 ttgctgagaaggaagtcgagaaggattccctcgtta 8864764
>ref|XM_459397.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E02156g) partial mRNA Length = 6672 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 119 tttaactttctttccttttctgga 142 |||||||||||||||||||||||| Sbjct: 1376 tttaactttctttccttttctgga 1353
>gb|AF424737.1| Mus musculus carcinoma associated protein-like protein (Hoj1) mRNA, complete cds Length = 1733 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||||||||||| Sbjct: 804 cagctggaggagatccggcagaag 827
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 119 tttaactttctttccttttctgga 142 |||||||||||||||||||||||| Sbjct: 145931 tttaactttctttccttttctgga 145954
>ref|NM_027760.1| Mus musculus Ras association (RalGDS/AF-6) domain family 8 (Rassf8), mRNA Length = 1733 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||||||||||| Sbjct: 804 cagctggaggagatccggcagaag 827
>gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, complete sequence Length = 185908 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 123 actttctttccttttctggaggc 145 ||||||||||||||||||||||| Sbjct: 23005 actttctttccttttctggaggc 22983
>gb|AC091196.6| Homo sapiens chromosome 11, clone RP11-371C18, complete sequence Length = 132211 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 123 actttctttccttttctggaggc 145 ||||||||||||||||||||||| Sbjct: 38367 actttctttccttttctggaggc 38389
>ref|NM_185433.2| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 239 ccggcagaagagggcggccgag 260 |||||||||||||||||||||| Sbjct: 659 ccggcagaagagggcggccgag 680
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 gctcccgccccggccgatccat 47 |||||||||||||||||||||| Sbjct: 1885687 gctcccgccccggccgatccat 1885708
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ccggcagaagagggcggccgag 260 |||||||||||||||||||||| Sbjct: 866773 ccggcagaagagggcggccgag 866752
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ccggcagaagagggcggccgag 260 |||||||||||||||||||||| Sbjct: 149907 ccggcagaagagggcggccgag 149886
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ccggcagaagagggcggccgag 260 |||||||||||||||||||||| Sbjct: 47668 ccggcagaagagggcggccgag 47647
>dbj|AK070995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078L22, full insert sequence Length = 906 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 239 ccggcagaagagggcggccgag 260 |||||||||||||||||||||| Sbjct: 659 ccggcagaagagggcggccgag 680
>emb|AL161668.6|CNS01RHB Human chromosome 14 DNA sequence BAC R-998D10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203363 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 116 gcttttaactttctttcctttt 137 |||||||||||||||||||||| Sbjct: 55460 gcttttaactttctttcctttt 55439
>emb|AL355922.4|CNS05TD4 Human chromosome 14 DNA sequence BAC R-84C10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157979 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 gcttttaactttctttcctttt 137 |||||||||||||||||||||| Sbjct: 1332 gcttttaactttctttcctttt 1353
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 gctcccgccccggccgatccat 47 |||||||||||||||||||||| Sbjct: 2431340 gctcccgccccggccgatccat 2431319
>gb|AC157996.2| Mus musculus BAC clone RP24-194J17 from chromosome 9, complete sequence Length = 158268 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 tttaactttctttccttttct 139 ||||||||||||||||||||| Sbjct: 106399 tttaactttctttccttttct 106419
>emb|BX832581.1|CNS0A1P7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH81ZG05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2067 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 gagaaagacgctgcagttatc 539 ||||||||||||||||||||| Sbjct: 1370 gagaaagacgctgcagttatc 1350
>gb|AC157086.2| Mus musculus BAC clone RP24-79B18 from chromosome 9, complete sequence Length = 200734 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tttaactttctttccttttct 139 ||||||||||||||||||||| Sbjct: 185940 tttaactttctttccttttct 185920
>dbj|AB164633.1| Streptomyces griseus AdBS4 gene cluster (orfA-AdBS4, orf1-AdBS4, orf2-AdBS4, orf3-AdBS4), complete and partial cds Length = 8426 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gggccgccgcaccgtacgcct 102 ||||||||||||||||||||| Sbjct: 6737 gggccgccgcaccgtacgcct 6757
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cgcccgccgcgaccgcgtcc 299 |||||||||||||||||||| Sbjct: 84807 cgcccgccgcgaccgcgtcc 84788
>gb|BC044853.1| Mus musculus SEC14 and spectrin domains 1, mRNA (cDNA clone MGC:51459 IMAGE:3978465), complete cds Length = 2732 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 870 cagctggaggagatccagcagaag 893
>ref|NM_175465.2| Mus musculus SEC14 and spectrin domains 1 (Sestd1), mRNA Length = 2732 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 870 cagctggaggagatccagcagaag 893
>gb|AC147227.4| Mus musculus BAC clone RP23-153H22 from chromosome 18, complete sequence Length = 204482 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 cagaagaggaacagtacagg 614 |||||||||||||||||||| Sbjct: 98600 cagaagaggaacagtacagg 98581
>ref|XR_004117.1| PREDICTED: Mus musculus similar to SEC14 and spectrin domains 1 (LOC627892), mRNA Length = 896 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 304 cagctggaggagatccagcagaag 327
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 aggagcatgaagaagcggtt 586 |||||||||||||||||||| Sbjct: 917414 aggagcatgaagaagcggtt 917433
>gb|BC013245.1| Mus musculus SEC14 and spectrin domains 1, mRNA (cDNA clone IMAGE:3588319) Length = 2860 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 951 cagctggaggagatccagcagaag 974
>gb|AC134434.4| Mus musculus BAC clone RP24-420E8 from chromosome 7, complete sequence Length = 214856 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 167215 cagctggaggagatccagcagaag 167238
>gb|DQ483294.1| Gymnogyps californianus clone 186A microsatellite sequence Length = 674 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agaggatgcagcagcagcaa 278 |||||||||||||||||||| Sbjct: 472 agaggatgcagcagcagcaa 453
>gb|DQ483281.1| Gymnogyps californianus clone 173A microsatellite sequence Length = 580 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agaggatgcagcagcagcaa 278 |||||||||||||||||||| Sbjct: 117 agaggatgcagcagcagcaa 136
>gb|DQ483183.1| Gymnogyps californianus clone 75A microsatellite sequence Length = 588 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agaggatgcagcagcagcaa 278 |||||||||||||||||||| Sbjct: 472 agaggatgcagcagcagcaa 453
>gb|DQ483177.1| Gymnogyps californianus clone 69A microsatellite sequence Length = 576 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agaggatgcagcagcagcaa 278 |||||||||||||||||||| Sbjct: 460 agaggatgcagcagcagcaa 441
>gb|AC129325.4| Mus musculus BAC clone RP23-255J24 from 1, complete sequence Length = 194106 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ttttaactttctttcctttt 137 |||||||||||||||||||| Sbjct: 85974 ttttaactttctttcctttt 85993
>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence Length = 113258 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||| ||||||||| Sbjct: 105375 cagctggaggagatacggcagaag 105398
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ttcgcccgtcagcttctgat 192 |||||||||||||||||||| Sbjct: 2493266 ttcgcccgtcagcttctgat 2493285
>gb|AC115873.8| Mus musculus, clone RP24-349F22, complete sequence Length = 159466 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 cagaagaggaacagtacagg 614 |||||||||||||||||||| Sbjct: 16633 cagaagaggaacagtacagg 16614
>emb|AL354693.6| Human DNA sequence from clone RP11-14E8 on chromosome 1 Contains the part of the EDARADD gene for EDAR-associated death domain and two CpG islands, complete sequence Length = 78986 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcccgagctcccgccccg 37 |||||||||||||||||||| Sbjct: 4605 cctcccgagctcccgccccg 4586
>gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, complete sequence Length = 184304 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 atgggaacttggaattggag 386 |||||||||||||||||||| Sbjct: 133606 atgggaacttggaattggag 133587
>gb|AY028907.1|AY028906S2 Homo sapiens ectodysplasin A receptor associated death domain (EDARADD) gene, exon 2 Length = 403 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcccgagctcccgccccg 37 |||||||||||||||||||| Sbjct: 184 cctcccgagctcccgccccg 165
>dbj|AK031980.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330521L19 product:hypothetical protein, full insert sequence Length = 1305 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||| ||||||||| Sbjct: 110 cagctggaggagatacggcagaag 133
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 acgcccgccgcgaccgcgtc 298 |||||||||||||||||||| Sbjct: 1272286 acgcccgccgcgaccgcgtc 1272305
>dbj|AK047939.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130022N23 product:hypothetical Cellular retinaldehyde-binding protein (CRAL)/Triple function domain (TRIO) containing protein, full insert sequence Length = 1891 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 868 cagctggaggagatccagcagaag 891
>dbj|AK017214.1| Mus musculus 10 days neonate intestine cDNA, RIKEN full-length enriched library, clone:5133400D11 product:RIKEN cDNA 5133400D11 gene, full insert sequence Length = 1140 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||| ||||||||| Sbjct: 211 cagctggaggagatacggcagaag 234
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cgcccgccgcgaccgcgtcc 299 |||||||||||||||||||| Sbjct: 14161487 cgcccgccgcgaccgcgtcc 14161506
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttttaactttctttcctttt 137 |||||||||||||||||||| Sbjct: 4882376 ttttaactttctttcctttt 4882357
>gb|AC093761.3| Homo sapiens BAC clone RP11-89I4 from 4, complete sequence Length = 155154 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 gagagaggcagaagaggaac 606 |||||||||||||||||||| Sbjct: 64026 gagagaggcagaagaggaac 64045
>gb|AC009975.9| Homo sapiens BAC clone RP11-460M2 from 2, complete sequence Length = 211305 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 585 ttgagagaggcagaagaggaacag 608 |||||||||| ||||||||||||| Sbjct: 17847 ttgagagagggagaagaggaacag 17870
>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence Length = 230020 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||| ||||||||| Sbjct: 193610 cagctggaggagatacggcagaag 193633
>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G11 Length = 167168 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttttaactttctttcctttt 137 |||||||||||||||||||| Sbjct: 64908 ttttaactttctttcctttt 64889
>dbj|AK073557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046C19, full insert sequence Length = 2846 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cgcccgccgcgaccgcgtcc 299 |||||||||||||||||||| Sbjct: 1815 cgcccgccgcgaccgcgtcc 1834
>gb|AC153653.4| Mus musculus BAC clone RP23-454L5 from 1, complete sequence Length = 180403 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttttaactttctttcctttt 137 |||||||||||||||||||| Sbjct: 132065 ttttaactttctttcctttt 132046
>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188020 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gcttttaactttctttcctt 135 |||||||||||||||||||| Sbjct: 136604 gcttttaactttctttcctt 136623
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cgcccgccgcgaccgcgtcc 299 |||||||||||||||||||| Sbjct: 14243489 cgcccgccgcgaccgcgtcc 14243508
>emb|AL772359.8| Mouse DNA sequence from clone RP23-305E10 on chromosome 11, complete sequence Length = 105736 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttttaactttctttcctttt 137 |||||||||||||||||||| Sbjct: 39767 ttttaactttctttcctttt 39748
>gb|U15969.1|BTU15969 Bos taurus (hst) gene, complete cds Length = 2250 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ttctggaggcgggaggcggctcag 159 ||||| |||||||||||||||||| Sbjct: 583 ttctgaaggcgggaggcggctcag 560
>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH020D15, complete sequence Length = 143633 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 taactttctttccttttctg 140 |||||||||||||||||||| Sbjct: 57556 taactttctttccttttctg 57575
>emb|AL772242.7| Mouse DNA sequence from clone RP23-15E4 on chromosome 2, complete sequence Length = 196548 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cagctggaggagatccggcagaag 248 |||||||||||||||| ||||||| Sbjct: 74489 cagctggaggagatccagcagaag 74512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,266,744 Number of Sequences: 3902068 Number of extensions: 6266744 Number of successful extensions: 141757 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141102 Number of HSP's gapped (non-prelim): 653 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
