>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor|
          Length = 274

 Score =  124 bits (311), Expect = 1e-28
 Identities = 62/98 (63%), Positives = 67/98 (68%), Gaps = 15/98 (15%)
 Frame = +1

Query: 232 SVLGFAGDGLAAAKQGPLAGRIPGLSGPDQNG---------------WRTYRRPDEKSGG 366
           + L F  +GLA  KQG LAGR+PGLS PD+ G                 TYRRPDEKSGG
Sbjct: 60  TALAFPREGLAVVKQGLLAGRVPGLSEPDEEGSFHSVLDSSSSCLALTLTYRRPDEKSGG 119

Query: 367 HGVGWSPIIPYSFKVPDGWEETPVSIADLGGTEIDLRF 480
           HGVGWSPIIPY+F VP  W E PVSIADLGGTEIDLRF
Sbjct: 120 HGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRF 157

>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed|
           message 1 protein) (Castration-induced prostatic
           apoptosis-related protein 1) (CIPAR-1)
          Length = 296

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 482 PKRRSISVPPRSAIETGVSSQPSGTLKL*GMMGLQPTPCPPDFSSGLRYVLQPF*SGPDS 303
           P+  +++ PP         S P+G        G+   P P + S G      P  +G  S
Sbjct: 81  PREEAVTSPPLKREVNSTDSSPTGFSS--NSSGIHLAPTPEEHSLGSPETSVPA-TGSQS 137

Query: 302 PGILPASGPCLAAARP--SPAKP 240
           P +L + GP  A+  P  SP++P
Sbjct: 138 PTLLFSQGPTSASTSPATSPSEP 160

>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 305 SPGILPASGPCLAAARPSPAKPSTETP 225
           +PG + A  P  AAA+P+PAKP+   P
Sbjct: 91  TPGAVAAPKPGTAAAKPTPAKPAAPKP 117

>SF3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome-associated|
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing
           factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
          Length = 1307

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
 Frame = +1

Query: 256 GLAAAKQGPLAGRI-PGLSGPD----QNGWRTYRRPDEKSGGHGVGWSPI---------- 390
           G+A   +G   G + PG SG      +N W    + +  + GHG GW+            
Sbjct: 267 GVATPGRGDTPGHVTPGHSGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSI 326

Query: 391 ----IPYSFKVPDGWEETPVSIADLGGT 462
                P + K    W+ETP S   +GG+
Sbjct: 327 GETPTPGASKRKSRWDETPAS--QMGGS 352

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -3

Query: 386 GLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 225
           G  P P PP+ S G  +  +P       PG  P  GP    ARP P  P    P
Sbjct: 41  GGPPRPPPPEESQGEGHQKRP-----RPPGDGPEQGPAPPGARPPPGPPPPGPP 89

>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 582

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 380 QPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 225
           QP P PP   +      QP    P  P ++ A G  +    P P++P   TP
Sbjct: 99  QPLPPPPPLPAAA----QPLPLAPRQPALVGAPGLSIKEPAPLPSRPQVPTP 146

>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1612

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 22/68 (32%), Positives = 26/68 (38%)
 Frame = -3

Query: 380 QPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETPQXXXXXXX 201
           QP   PP F         P  S   SP  LP + P L    P+PA PS  +PQ       
Sbjct: 40  QPPQTPPAFPQP-NLARSPHYSHAPSP--LPGALPPLNGGAPTPAHPSDPSPQYQAHSAA 96

Query: 200 XXXAFLLP 177
               + LP
Sbjct: 97  GTPQYPLP 104

>GGA2_HUMAN (Q9UJY4) ADP-ribosylation factor-binding protein GGA2|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 2) (Gamma-adaptin-related protein 2) (VHS domain
           and ear domain of gamma-adaptin) (Vear)
          Length = 613

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = -3

Query: 458 PPRSAIETGVSSQPSGTLKL*GMMGLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASG 279
           P  S +  G    PS    L  ++  QP PCP      L YV Q        PG   + G
Sbjct: 399 PSSSTLPGGGVQNPSADRNLLDLLSPQPAPCP------LNYVSQKSVPKEVPPGTKSSPG 452

Query: 278 PCLAAARPSPAKPSTETP 225
               A   +P+  S  TP
Sbjct: 453 WSWEAGPLAPSPSSQNTP 470

>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 377 PTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 225
           PTP     +S       P  + P +PG  PAS P   A  P+P++P    P
Sbjct: 38  PTPAATPAASPAPVSSDPAVAAPAAPGQTPASAPA-PAQTPAPSQPGPALP 87

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 389 MGLQPTPCPPDFSSGLRYVLQPF*SGP-DSPGILPASGPCLAAARPSPAKPSTETPQ 222
           MG +PTP PP  +SG     +P   GP   PG++P      A   P P  P  + P+
Sbjct: 170 MGTRPTPRPP--ASGGTGAPRP---GPRPHPGMMPPRPGASAGGPPRPQAPRPQAPR 221

>KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch short protein]|
          Length = 1477

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 8/115 (6%)
 Frame = +1

Query: 73   PTKGRAPTVVRCGSGPNLSGSHEEEEQREGVMALVGRRNXXXXXXXXXXXCGVSV-LGFA 249
            P K  A +   C  G N S S     +  G  A +   N              S   G A
Sbjct: 1051 PVKNSASSFFSCLHGEN-SQSMTNIYKTSGTAAAMAAHNSPLTPNVSMERASRSASAGAA 1109

Query: 250  GDGLAAAKQGPLAGRIPGLSGPDQNGW-------RTYRRPDEKSGGHGVGWSPII 393
            G   AA ++   A  IP  S  + N         +T  +P ++SGG     SPI+
Sbjct: 1110 GSAAAAVEEHSAADSIPSSSNINANRTTGAIPKVKTANKPAKESGGSSTAASPIL 1164

>TRDN_CANFA (P82179) Triadin|
          Length = 700

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 341 RYVLQPF*SGPDSPG---ILPASGPCLAAARPSPAKPSTE 231
           RY++  F  G   PG    LP   P + A+RP+PA P+ E
Sbjct: 263 RYMIDMFVHGDLRPGQSPALPPPLPTVQASRPTPASPTLE 302

>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early development|
           regulatory protein 1)
          Length = 1004

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 461 VPPRSAIETGVSSQPSGTLKL*GMMGLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPAS 282
           VPP   +    S Q + TL +  M+   P   PPD +      +Q        P + P  
Sbjct: 453 VPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAPKPPIPIQ------SKPPVAPIK 506

Query: 281 GPCLAAARPSPAK 243
            P L AA+ S A+
Sbjct: 507 PPQLGAAKMSAAQ 519

>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated|
            factor 180) (BAF180)
          Length = 1689

 Score = 25.8 bits (55), Expect(2) = 6.6
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
 Frame = -1

Query: 361  QTFRPACGMFSNHSD---------QGQTAQGSSLPVGPAWPPPGHHLQNQAP 233
            Q   P  GM   +            G  + GS  P+ P  PPP HHL    P
Sbjct: 1478 QQLTPVAGMMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPP-HHLPPGVP 1528



 Score = 21.6 bits (44), Expect(2) = 6.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 198  GQCIPPPNQGHHP 160
            GQ  PPP  G HP
Sbjct: 1568 GQQAPPPYPGPHP 1580

>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein|
           1) (NDPP-1)
          Length = 802

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -3

Query: 449 SAIETGV--SSQPSGTLKL*GM-MGLQPTPCPPDFSSGLRYVLQ-PF*SGPDSPGILPAS 282
           SA E G+  +SQP+ +    G+ +G    P PP   SG  Y    P   GP  P  LP++
Sbjct: 517 SASEPGLQAASQPAESPTPQGLVLGPPAPPPPPPLPSGPAYASALPPPPGPPPPPPLPST 576

Query: 281 GPCLAAARPSPAKPSTETP 225
           GP      P P  P    P
Sbjct: 577 GP------PPPPPPPPPLP 589

>TRDN_HUMAN (Q13061) Triadin|
          Length = 728

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 341 RYVLQPF*SGPDSPGILPASGPCLA---AARPSPAKPSTE 231
           RY++  F  G   PG  PA  P L    A+RP+PA P+ E
Sbjct: 270 RYMIDIFVHGDLKPGQSPAIPPPLPTEQASRPTPASPALE 309

>K0310_HUMAN (O15027) Protein KIAA0310|
          Length = 2179

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -3

Query: 386  GLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPS 237
            G  P  CP   SS +  + +P   G   PG L  + P LA   PSP   S
Sbjct: 1720 GALPQQCPGTPSSEMEQLDRP---GLSQPGALGIANPLLAVPAPSPEHSS 1766

>VL2_HPV25 (P36753) Minor capsid protein L2|
          Length = 520

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 317 SGPDSPGILPASGPCLAAARPSPAKPSTETP 225
           SGPD   +LP     +A   P P  PST+TP
Sbjct: 123 SGPD---LLPGEVETIAEIHPGPVVPSTDTP 150

>XPSN_XANCP (P29040) General secretion pathway protein N (Protein xpsN)|
          Length = 261

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = -3

Query: 473 RSISVPPRSAIETGVSSQPSGTLKL*GMMGLQPTPCPPDFSSGLRYVLQPF*SGPDSPGI 294
           R +++ PRSA   G     +  L++    G QP    P    G           P +PG 
Sbjct: 134 RLLALQPRSATIEGPGGTQTLELQVFNGQGGQP----PTAIGGR----------PQAPGA 179

Query: 293 LPASGPCLAAARPSPAKPSTETPQ 222
           +P   P +  A  +PA P  E PQ
Sbjct: 180 VPPLPPNVPPAPATPAPPPAEVPQ 203

>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate|
            repeat-containing protein)
          Length = 1247

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 380  QPTPCPPDFS-SGLRYVLQPF*SGPDSPGILPA-SGPCLAAARPSPAKPST 234
            QP P P   S   L   L P   GP   G LP+   PCL   R SPA P++
Sbjct: 983  QPPPVPAKKSRERLANGLHPVPMGPS--GALPSPDAPCLPVKRGSPASPTS 1031

>FOXE3_MOUSE (Q9QY14) Forkhead box protein E3|
          Length = 288

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -3

Query: 428 SSQPSGTLKL*GMMGLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSP 249
           S+ P+   +L  ++GLQP P  P           P  + PD+     A  PC AAA P  
Sbjct: 188 SAPPARLFRLDSLLGLQPEPPGPVAPE------PPCCAAPDA-----AFPPCAAAASPPL 236

Query: 248 AKPSTE 231
             P++E
Sbjct: 237 YSPASE 242

>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)|
          Length = 959

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -3

Query: 356 FSSGLRYVLQPF*SGPDSPGILPASGPCL---AAARPSP-AKPSTETPQ 222
           + S L  +L    SGP SP +LP SG  L    AA P P   P+  TP+
Sbjct: 805 YKSKLSAILGSNNSGPASPIMLPTSGVTLKPTTAATPKPITTPTVTTPK 853

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 271  KQGPLAGRIPGLSGPDQNG-WRTYRRPDEKSGGHGVGW 381
            K+GP  G  P L GP   G WR   +   +  GH   W
Sbjct: 1114 KEGPSLGGWPELEGPSLEGIWRGPPQEHREQWGHSEAW 1151

>DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3) (mDIA2) (p134mDIA2)
          Length = 1171

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -3

Query: 347 GLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 225
           G +  LQP   G   P  LP + P L+   P P  P    P
Sbjct: 536 GTKIPLQPSVEGEAGPSALPPAPPALSGGVPPPPPPPPPPP 576

>LMNA_XENLA (P11048) Lamin-A|
          Length = 665

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 268 AKQGPLAGRIPGLSGPDQNG---WRTYRRPDEKSGGHGVGWSPI 390
           A QG  +G + G SG   +     RTYR     SGG G+G SP+
Sbjct: 602 ASQG--SGLVTGSSGSSSSSVTLTRTYRSTGGTSGGSGLGESPV 643


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,714,979
Number of Sequences: 219361
Number of extensions: 1504902
Number of successful extensions: 3685
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3677
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)