Clone Information

BLAST Search Result

Clone Name	baal17n07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_197930.1\| Oryza sativa (japonica cultivar-group) putative...	468	e-129
2	dbj\|AK104823.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	468	e-129
3	dbj\|AK104589.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	468	e-129
4	dbj\|AK104666.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	468	e-129
5	dbj\|AK104396.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	468	e-129
6	dbj\|AK065306.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	468	e-129
7	gb\|BT019171.1\| Zea mays clone Contig840.F mRNA sequence	408	e-111
8	gb\|AY108536.1\| Zea mays PCO126310 mRNA sequence	400	e-108
9	gb\|AC018727.10\| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen...	256	6e-65
10	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	256	6e-65
11	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	256	6e-65
12	dbj\|AB127079.1\| Streptomyces sp. AP77 apglu77 gene for beta-1,3-...	52	0.002
13	gb\|CP000096.1\| Pelodictyon luteolum DSM 273, complete genome	48	0.028
14	gb\|AY714813.1\| Cercopithecine herpesvirus 2, complete genome	44	0.44
15	gb\|AF533768.1\| Cercopithecine herpesvirus 1 strain E2490, comple...	44	0.44
16	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	44	0.44
17	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	44	0.44
18	gb\|DQ149153.1\| Cercopithecine herpesvirus 16 strain X313, comple...	44	0.44
19	dbj\|AB096160.1\| Cercopithecine herpesvirus 1 DNA, UL region, com...	44	0.44
20	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	44	0.44
21	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	44	0.44
22	gb\|CP000110.1\| Synechococcus sp. CC9605, complete genome	42	1.7
23	gb\|BC031925.1\| Mus musculus phosphodiesterase 6A, cGMP-specific,...	42	1.7
24	ref\|NM_146086.2\| Mus musculus phosphodiesterase 6A, cGMP-specifi...	42	1.7
25	ref\|XM_994360.1\| PREDICTED: Mus musculus similar to phosphodiest...	42	1.7
26	gb\|AC121903.2\| Mus musculus BAC clone RP24-174G24 from 18, compl...	42	1.7
27	gb\|BC044892.1\| Mus musculus phosphodiesterase 6A, cGMP-specific,...	42	1.7
28	gb\|AC098966.3\| Homo sapiens chromosome 16 clone RP11-465H19, com...	42	1.7
29	gb\|AC092142.5\| Homo sapiens chromosome 16 clone RP11-510J16, com...	42	1.7
30	ref\|XM_225895.3\| PREDICTED: Rattus norvegicus phosphodiesterase ...	42	1.7
31	emb\|X60664.1\|MMPA Murine MPA gene for rod phosphodiesterase alph...	42	1.7
32	ref\|XM_363163.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.9
33	ref\|XM_367220.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.9
34	emb\|X57144.1\|HHRNAPOP H. halobium RNA polymerase subunit operon	40	6.9
35	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	6.9
36	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	6.9
37	ref\|XM_683910.1\| PREDICTED: Danio rerio similar to hyperpolariza...	40	6.9
38	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	6.9
39	gb\|AF275631.1\|AF275631 Phanerochaete chrysosporium lipE/lipA int...	40	6.9
40	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	6.9
41	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	40	6.9
42	gb\|AE005138.1\| Halobacterium sp. NRC-1 section 169 of 170 of the...	40	6.9
43	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	40	6.9
44	emb\|AL808143.5\| Mouse DNA sequence from clone RP23-384K11 on chr...	40	6.9
45	gb\|AY832046.1\| Amborella trichopoda cytochrome c biogenesis ccmC...	40	6.9

>ref|NM_197930.1| Oryza sativa (japonica cultivar-group) putative Clp protease
           (OSJNBa0056G17.6), mRNA
          Length = 897

 Score =  468 bits (236), Expect = e-129
 Identities = 332/364 (91%)
 Strand = Plus / Plus

                                                                       
Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
           ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 235 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 294

                                                                       
Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
           ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 295 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 354

                                                                       
Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323
           ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 355 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 414

                                                                       
Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383
           || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| 
Sbjct: 415 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 474

                                                                       
Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443
           ||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 475 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 534

                                                                       
Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503
           |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 535 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 594

               
Query: 504 gtcc 507
           ||||
Sbjct: 595 gtcc 598

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>dbj|AK104823.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F03, full
           insert sequence
          Length = 1125

 Score =  468 bits (236), Expect = e-129
 Identities = 332/364 (91%)
 Strand = Plus / Plus

                                                                       
Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
           ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 248 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 307

                                                                       
Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
           ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 308 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 367

                                                                       
Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323
           ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 368 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 427

                                                                       
Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383
           || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| 
Sbjct: 428 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 487

                                                                       
Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443
           ||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 488 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 547

                                                                       
Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503
           |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 548 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 607

               
Query: 504 gtcc 507
           ||||
Sbjct: 608 gtcc 611

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>dbj|AK104589.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H06, full
           insert sequence
          Length = 1045

 Score =  468 bits (236), Expect = e-129
 Identities = 332/364 (91%)
 Strand = Plus / Plus

                                                                       
Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
           ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 242 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 301

                                                                       
Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
           ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 302 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 361

                                                                       
Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323
           ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 362 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 421

                                                                       
Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383
           || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| 
Sbjct: 422 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 481

                                                                       
Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443
           ||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 482 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 541

                                                                       
Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503
           |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 542 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 601

               
Query: 504 gtcc 507
           ||||
Sbjct: 602 gtcc 605

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>dbj|AK104666.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A06, full
           insert sequence
          Length = 1069

 Score =  468 bits (236), Expect = e-129
 Identities = 332/364 (91%)
 Strand = Plus / Plus

                                                                       
Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
           ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 246 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 305

                                                                       
Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
           ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 306 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 365

                                                                       
Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323
           ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 366 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 425

                                                                       
Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383
           || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| 
Sbjct: 426 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 485

                                                                       
Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443
           ||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 486 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 545

                                                                       
Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503
           |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 546 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 605

               
Query: 504 gtcc 507
           ||||
Sbjct: 606 gtcc 609

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>dbj|AK104396.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C09, full
           insert sequence
          Length = 1106

 Score =  468 bits (236), Expect = e-129
 Identities = 332/364 (91%)
 Strand = Plus / Plus

                                                                       
Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
           ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 246 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 305

                                                                       
Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
           ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 306 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 365

                                                                       
Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323
           ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 366 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 425

                                                                       
Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383
           || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| 
Sbjct: 426 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 485

                                                                       
Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443
           ||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 486 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 545

                                                                       
Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503
           |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 546 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 605

               
Query: 504 gtcc 507
           ||||
Sbjct: 606 gtcc 609

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>dbj|AK065306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O07, full
           insert sequence
          Length = 1113

 Score =  468 bits (236), Expect = e-129
 Identities = 332/364 (91%)
 Strand = Plus / Plus

                                                                       
Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
           ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 249 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 308

                                                                       
Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
           ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 309 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 368

                                                                       
Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323
           ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 369 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 428

                                                                       
Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383
           || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| 
Sbjct: 429 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 488

                                                                       
Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443
           ||||| ||||||||| |||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 489 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 548

                                                                       
Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503
           |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 549 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 608

               
Query: 504 gtcc 507
           ||||
Sbjct: 609 gtcc 612

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>gb|BT019171.1| Zea mays clone Contig840.F mRNA sequence
          Length = 1218

 Score =  408 bits (206), Expect = e-111
 Identities = 320/358 (89%)
 Strand = Plus / Minus

                                                                       
Query: 150 gtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgaggacttc 209
           ||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 877 gtcatgggcctcctcctccgggagcgcatagtcttcctcggcaacgagatcgaggacttc 818

                                                                       
Query: 210 ctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaatctgac 269
           ||||| ||||||||||||||||||||||||||||| |||||||| ||| | || ||||||
Sbjct: 817 ctcgcggacgccgtcgtcagccagctcctcctccttgacgccatcgacccggactctgac 758

                                                                       
Query: 270 atccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatctacgat 329
           ||||| |||||||||||||| || || ||||| || || || |||||||| ||||| |||
Sbjct: 757 atccgcctcttcgtcaactcaccagggggatcccttagcgcaacaatggccatctatgat 698

                                                                       
Query: 330 gtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctggatccaca 389
           ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 697 gtaatgcagcttgtgagggcagacgtgtccactattggaatgggcatagctggatcaaca 638

                                                                       
Query: 390 gcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaacaccagg 449
           ||||||||| |||||||||||||| | |||||||| || || ||||||||||||||||||
Sbjct: 637 gcttctataatccttggtggtggcacgaagggcaagcgatttgccatgcccaacaccagg 578

                                                                     
Query: 450 attatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagaggtcc 507
           |||||||| |||||||| || ||||| || ||||| |||||| | |||||||||||||
Sbjct: 577 attatgatccatcagcctgtcggaggtgcaagtgggcaggccctagatgtagaggtcc 520

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>gb|AY108536.1| Zea mays PCO126310 mRNA sequence
          Length = 1320

 Score =  400 bits (202), Expect = e-108
 Identities = 319/358 (89%)
 Strand = Plus / Plus

                                                                       
Query: 150 gtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgaggacttc 209
           ||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 350 gtcatgggcctcctcctccgggagcgcatagtcttcctcggcaacgagatcgaggacttc 409

                                                                       
Query: 210 ctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaatctgac 269
           ||||| ||||||||||||||||||||||||||||| |||||||| ||| | || ||||||
Sbjct: 410 ctcgcggacgccgtcgtcagccagctcctcctccttgacgccatcgacccggactctgac 469

                                                                       
Query: 270 atccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatctacgat 329
           ||||| |||||||||||||| || || ||||| || || || |||||||| ||||| |||
Sbjct: 470 atccgcctcttcgtcaactcaccagggggatcccttagcgcaacaatggccatctatgat 529

                                                                       
Query: 330 gtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctggatccaca 389
           ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 530 gtaatgcagcttgtgagggcagacgtgtccactattggaatgggcatagctggatcaaca 589

                                                                       
Query: 390 gcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaacaccagg 449
           ||||||||| |||||||||||||| | |||||||| || || ||||||||||||||||||
Sbjct: 590 gcttctataatccttggtggtggcacgaagggcaagcgatttgccatgcccaacaccagg 649

                                                                     
Query: 450 attatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagaggtcc 507
           |||||||| |||||||| || ||||| || || || |||||| | |||||||||||||
Sbjct: 650 attatgatccatcagcctgtcggaggtgcaagcgggcaggccctagatgtagaggtcc 707

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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
              sequence
          Length = 139999

 Score =  256 bits (129), Expect = 6e-65
 Identities = 186/205 (90%)
 Strand = Plus / Plus

                                                                          
Query: 303    ctcagtgcgacaatggctatctacgatgtaatgcagctggtgagggcagatgtatccact 362
              ||||| || |||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 125770 ctcagcgcaacaatggccatctatgatgtaatgcagctcgtgagggcagatgtttccact 125829

                                                                          
Query: 363    attggaatgggcatagctggatccacagcttctatactccttggtggtggcgcaaagggc 422
              |||||| ||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||
Sbjct: 125830 attggattgggcatagctggttccactgcttctataatccttggtggtggcacaaagggc 125889

                                                                          
Query: 423    aaacggttcgccatgcccaacaccaggattatgatgcatcagcccgtgggaggcgcgagt 482
              || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 125890 aagcgattcgccatgcccaacaccaggataatgatccatcagcccgttggaggcgcaagt 125949

                                       
Query: 483    ggccaggccttggatgtagaggtcc 507
              || |||||||||||||| |||||||
Sbjct: 125950 gggcaggccttggatgtcgaggtcc 125974



 Score =  222 bits (112), Expect = 9e-55
 Identities = 151/164 (92%)
 Strand = Plus / Plus

                                                                          
Query: 144    ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
              ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 124696 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 124755

                                                                          
Query: 204    gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
              ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 124756 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 124815

                                                          
Query: 264    tctgacatccggctcttcgtcaactcccccggtggatcactcag 307
              ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 124816 tctgacatccgcctcttcgtcaactcccctgggggatcactcag 124859

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  256 bits (129), Expect = 6e-65
 Identities = 186/205 (90%)
 Strand = Plus / Plus

                                                                            
Query: 303      ctcagtgcgacaatggctatctacgatgtaatgcagctggtgagggcagatgtatccact 362
                ||||| || |||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 22671101 ctcagcgcaacaatggccatctatgatgtaatgcagctcgtgagggcagatgtttccact 22671160

                                                                            
Query: 363      attggaatgggcatagctggatccacagcttctatactccttggtggtggcgcaaagggc 422
                |||||| ||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||
Sbjct: 22671161 attggattgggcatagctggttccactgcttctataatccttggtggtggcacaaagggc 22671220

                                                                            
Query: 423      aaacggttcgccatgcccaacaccaggattatgatgcatcagcccgtgggaggcgcgagt 482
                || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 22671221 aagcgattcgccatgcccaacaccaggataatgatccatcagcccgttggaggcgcaagt 22671280

                                         
Query: 483      ggccaggccttggatgtagaggtcc 507
                || |||||||||||||| |||||||
Sbjct: 22671281 gggcaggccttggatgtcgaggtcc 22671305



 Score =  222 bits (112), Expect = 9e-55
 Identities = 151/164 (92%)
 Strand = Plus / Plus

                                                                            
Query: 144      ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
                ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 22670027 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 22670086

                                                                            
Query: 204      gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
                ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 22670087 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 22670146

                                                            
Query: 264      tctgacatccggctcttcgtcaactcccccggtggatcactcag 307
                ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 22670147 tctgacatccgcctcttcgtcaactcccctgggggatcactcag 22670190

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  256 bits (129), Expect = 6e-65
 Identities = 186/205 (90%)
 Strand = Plus / Plus

                                                                            
Query: 303      ctcagtgcgacaatggctatctacgatgtaatgcagctggtgagggcagatgtatccact 362
                ||||| || |||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 22683569 ctcagcgcaacaatggccatctatgatgtaatgcagctcgtgagggcagatgtttccact 22683628

                                                                            
Query: 363      attggaatgggcatagctggatccacagcttctatactccttggtggtggcgcaaagggc 422
                |||||| ||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||
Sbjct: 22683629 attggattgggcatagctggttccactgcttctataatccttggtggtggcacaaagggc 22683688

                                                                            
Query: 423      aaacggttcgccatgcccaacaccaggattatgatgcatcagcccgtgggaggcgcgagt 482
                || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 22683689 aagcgattcgccatgcccaacaccaggataatgatccatcagcccgttggaggcgcaagt 22683748

                                         
Query: 483      ggccaggccttggatgtagaggtcc 507
                || |||||||||||||| |||||||
Sbjct: 22683749 gggcaggccttggatgtcgaggtcc 22683773



 Score =  222 bits (112), Expect = 9e-55
 Identities = 151/164 (92%)
 Strand = Plus / Plus

                                                                            
Query: 144      ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203
                ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 22682495 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 22682554

                                                                            
Query: 204      gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263
                ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | 
Sbjct: 22682555 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 22682614

                                                            
Query: 264      tctgacatccggctcttcgtcaactcccccggtggatcactcag 307
                ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 22682615 tctgacatccgcctcttcgtcaactcccctgggggatcactcag 22682658

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>dbj|AB127079.1| Streptomyces sp. AP77 apglu77 gene for beta-1,3-glucanase, complete
            cds
          Length = 3521

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 171  gagcgcatcatcttcctcggcaacgagatcgaggacttcctcgccgacgccgtcgtcagc 230
            ||||| |||||||||||||||| ||||||||| |||  | ||||| ||| |||| ||  |
Sbjct: 2488 gagcggatcatcttcctcggcaccgagatcgacgacggcgtcgccaacgtcgtcatcgcc 2429

                      
Query: 231  cagctcctcc 240
            ||||||||||
Sbjct: 2428 cagctcctcc 2419

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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 165    ctccgggagcgcatcatcttcctcggca 192
              ||||| ||||||||||||||||||||||
Sbjct: 454893 ctccgcgagcgcatcatcttcctcggca 454920

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>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
          Length = 150715

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 205   acttcctcgccgacgccgtcgt 226
             ||||||||||||||||||||||
Sbjct: 99883 acttcctcgccgacgccgtcgt 99862

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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 205    acttcctcgccgacgccgtcgt 226
              ||||||||||||||||||||||
Sbjct: 101498 acttcctcgccgacgccgtcgt 101477

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 170     ggagcgcatcatcttcctcggc 191
               ||||||||||||||||||||||
Sbjct: 1493299 ggagcgcatcatcttcctcggc 1493320



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 171     gagcgcatcatcttcctcggca 192
               ||||||||||||||||||||||
Sbjct: 1492575 gagcgcatcatcttcctcggca 1492596



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    aggacttcctcgccgacgccgtcg 225
              ||||||||||||||||| ||||||
Sbjct: 310110 aggacttcctcgccgacaccgtcg 310087

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 179     catcttcctcggcaacgagatc 200
               ||||||||||||||||||||||
Sbjct: 2053209 catcttcctcggcaacgagatc 2053230

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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 205    acttcctcgccgacgccgtcgt 226
              ||||||||||||||||||||||
Sbjct: 102211 acttcctcgccgacgccgtcgt 102190

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>dbj|AB096160.1| Cercopithecine herpesvirus 1 DNA, UL region, complete sequence
          Length = 106873

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 205   acttcctcgccgacgccgtcgt 226
             ||||||||||||||||||||||
Sbjct: 92383 acttcctcgccgacgccgtcgt 92362

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 179     catcttcctcggcaacgagatc 200
               ||||||||||||||||||||||
Sbjct: 2635829 catcttcctcggcaacgagatc 2635850

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 170     ggagcgcatcatcttcctcggc 191
               ||||||||||||||||||||||
Sbjct: 2550418 ggagcgcatcatcttcctcggc 2550397

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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 168   cgggagcgcatcatcttcctcggca 192
             |||||||| ||||||||||||||||
Sbjct: 62966 cgggagcggatcatcttcctcggca 62942

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>gb|BC031925.1| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA
            (cDNA clone MGC:25111 IMAGE:4501123), complete cds
          Length = 3278

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  tcagccagctcctcctcctcg 246
            |||||||||||||||||||||
Sbjct: 1572 tcagccagctcctcctcctcg 1552

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>ref|NM_146086.2| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha (Pde6a),
            mRNA
          Length = 4230

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  tcagccagctcctcctcctcg 246
            |||||||||||||||||||||
Sbjct: 1572 tcagccagctcctcctcctcg 1552

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>ref|XM_994360.1| PREDICTED: Mus musculus similar to phosphodiesterase 6A,
            cGMP-specific, rod, alpha (LOC672557), mRNA
          Length = 2477

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  tcagccagctcctcctcctcg 246
            |||||||||||||||||||||
Sbjct: 1588 tcagccagctcctcctcctcg 1568

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>gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, complete sequence
          Length = 172114

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   tcagccagctcctcctcctcg 246
             |||||||||||||||||||||
Sbjct: 99889 tcagccagctcctcctcctcg 99909

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>gb|BC044892.1| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA
            (cDNA clone MGC:25410 IMAGE:4527430), complete cds
          Length = 4230

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  tcagccagctcctcctcctcg 246
            |||||||||||||||||||||
Sbjct: 1572 tcagccagctcctcctcctcg 1552

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>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence
          Length = 164925

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   atcccctcctcaagctgaacc 33
            |||||||||||||||||||||
Sbjct: 4891 atcccctcctcaagctgaacc 4911

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>gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, complete sequence
          Length = 177306

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     atcccctcctcaagctgaacc 33
              |||||||||||||||||||||
Sbjct: 159696 atcccctcctcaagctgaacc 159716

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>ref|XM_225895.3| PREDICTED: Rattus norvegicus phosphodiesterase 6A, cGMP-specific,
            rod, alpha (predicted) (Pde6a_predicted), mRNA
          Length = 2587

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  tcagccagctcctcctcctcg 246
            |||||||||||||||||||||
Sbjct: 1470 tcagccagctcctcctcctcg 1450

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>emb|X60664.1|MMPA Murine MPA gene for rod phosphodiesterase alpha-subunit
          Length = 3221

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  tcagccagctcctcctcctcg 246
            |||||||||||||||||||||
Sbjct: 1580 tcagccagctcctcctcctcg 1560

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>ref|XM_363163.1| Magnaporthe grisea 70-15 hypothetical protein (MG08747.4) partial
           cds
          Length = 672

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 212 cgccgacgccgtcgtcagccagctcctcctcc 243
           ||||| ||||||||||||||  ||||||||||
Sbjct: 78  cgccgccgccgtcgtcagccgcctcctcctcc 109

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>ref|XM_367220.1| Magnaporthe grisea 70-15 hypothetical protein (MG07145.4) partial
            mRNA
          Length = 2301

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ccagctcctcctcctcgacg 249
            ||||||||||||||||||||
Sbjct: 1312 ccagctcctcctcctcgacg 1293

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>emb|X57144.1|HHRNAPOP H. halobium RNA polymerase subunit operon
          Length = 11208

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  agctcctcctcctcgacgcc 251
            ||||||||||||||||||||
Sbjct: 3582 agctcctcctcctcgacgcc 3563

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 205     acttcctcgccgacgccgtc 224
               ||||||||||||||||||||
Sbjct: 4030292 acttcctcgccgacgccgtc 4030311

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 93      gagggccaaggcatccgagcggag 116
               |||||||||||||||||| |||||
Sbjct: 2510640 gagggccaaggcatccgaccggag 2510617

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>ref|XM_683910.1| PREDICTED: Danio rerio similar to hyperpolarization-activated,
           cyclic nucleotide-gated K+ 4 (LOC560503), mRNA
          Length = 876

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 ccttcttctccgggagcgca 177
           ||||||||||||||||||||
Sbjct: 571 ccttcttctccgggagcgca 552

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 182     cttcctcggcaacgagatcg 201
               ||||||||||||||||||||
Sbjct: 2232065 cttcctcggcaacgagatcg 2232046

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>gb|AF275631.1|AF275631 Phanerochaete chrysosporium lipE/lipA intergenic region
          Length = 13152

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   cgcggcggccatgtctcctc 81
            ||||||||||||||||||||
Sbjct: 5276 cgcggcggccatgtctcctc 5295

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     tcctcggcaacgagatcgag 203
               ||||||||||||||||||||
Sbjct: 8505886 tcctcggcaacgagatcgag 8505867

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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 241     tcctcgacgccatggactcc 260
               ||||||||||||||||||||
Sbjct: 1349644 tcctcgacgccatggactcc 1349663

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>gb|AE005138.1| Halobacterium sp. NRC-1 section 169 of 170 of the complete genome
          Length = 10529

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 232  agctcctcctcctcgacgcc 251
            ||||||||||||||||||||
Sbjct: 8251 agctcctcctcctcgacgcc 8270

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 44      cgcggcttcggcatcgtccgcggcggcc 71
               |||||||||||| |||| ||||||||||
Sbjct: 1011250 cgcggcttcggcgtcgtgcgcggcggcc 1011277

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>emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chromosome 2, complete
              sequence
          Length = 202474

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     catgtctcctctgtcccggt 90
              ||||||||||||||||||||
Sbjct: 189109 catgtctcctctgtcccggt 189128

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>gb|AY832046.1| Amborella trichopoda cytochrome c biogenesis ccmC (ccmC) gene,
           partial cds; mitochondrial
          Length = 628

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cactattggaatgggcatag 378
           ||||||||||||||||||||
Sbjct: 506 cactattggaatgggcatag 487


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,202,204
Number of Sequences: 3902068
Number of extensions: 4202204
Number of successful extensions: 80799
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79690
Number of HSP's gapped (non-prelim): 1109
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result