ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 2e-24
3gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 121 2e-24
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AK073386.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
6gb|AY109543.1| Zea mays CL854_1 mRNA sequence 60 5e-06
7gb|AC098890.3| Mus musculus BAC clone RP23-122P22 from X, comple... 42 1.2
8gb|AC119861.8| Mus musculus chromosome 3, clone RP23-291P19, com... 42 1.2
9gb|DQ145721.1| Homo sapiens v-abl Abelson murine leukemia viral ... 42 1.2
10gb|U07563.1|HSABLGR3 Human proto-oncogene tyrosine-protein kinas... 42 1.2
11emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chr... 42 1.2
12gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer... 42 1.2
13gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complet... 42 1.2
14emb|AL928911.7| Mouse DNA sequence from clone RP23-271N3 on chro... 42 1.2
15emb|AL671732.15| Mouse DNA sequence from clone RP23-309O6 on chr... 42 1.2
16gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, comp... 40 4.9
17ref|XM_632831.1| Dictyostelium discoideum hypothetical protein (... 40 4.9
18gb|AC167971.3| Mus musculus BAC clone RP24-439I22 from chromosom... 40 4.9
19gb|AC099597.6| Mus musculus chromosome 17, clone RP23-78K9, comp... 40 4.9
20gb|AC140194.2| Mus musculus BAC clone RP23-250K1 from chromosome... 40 4.9
21emb|CT010484.7| Mouse DNA sequence from clone RP23-296N14 on chr... 40 4.9
22emb|Z82190.1|HS180M12 Human DNA sequence from clone RP1-180M12 o... 40 4.9
23gb|AY029396.1| Campoletis sonorensis ichnovirus segment P, compl... 40 4.9
24emb|BX647485.1|HSM807631 Homo sapiens genomic DNA; cDNA DKFZp686... 40 4.9
25gb|AC107626.2| Homo sapiens chromosome 3 clone RP11-1008M1, comp... 40 4.9
26gb|AC097632.2| Homo sapiens chromosome 3 clone RP11-90H15, compl... 40 4.9
27gb|AC156796.2| Mus musculus BAC clone RP24-90N20 from chromosome... 40 4.9
28gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, comple... 40 4.9
29gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chrom... 40 4.9
30gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, comple... 40 4.9 
>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNOa0279P04, complete sequence
          Length = 32479

 Score =  121 bits (61), Expect = 2e-24
 Identities = 92/102 (90%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                         
Query: 202   catacagatatccagacaattctcaaataccatactacagc---agttcaatgcatgtgg 258
             |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 16176 catacagatatccagacaattctcaaataccatactacagccggagttcaatgcatgtgg 16235

                                                       
Query: 259   gtggaaatggtgcttgctatgtgcaacaaaancatgaggatc 300
             |   ||||||| ||| | ||||||||||||| ||||||||||
Sbjct: 16236 ggcaaaatggtacttaccatgtgcaacaaaatcatgaggatc 16277
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 92/102 (90%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                           
Query: 202     catacagatatccagacaattctcaaataccatactacagc---agttcaatgcatgtgg 258
               |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 4832540 catacagatatccagacaattctcaaataccatactacagccggagttcaatgcatgtgg 4832599

                                                         
Query: 259     gtggaaatggtgcttgctatgtgcaacaaaancatgaggatc 300
               |   ||||||| ||| | ||||||||||||| ||||||||||
Sbjct: 4832600 ggcaaaatggtacttaccatgtgcaacaaaatcatgaggatc 4832641
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  121 bits (61), Expect = 2e-24
 Identities = 92/102 (90%), Gaps = 3/102 (2%)
 Strand = Plus / Minus

                                                                        
Query: 202  catacagatatccagacaattctcaaataccatactacagc---agttcaatgcatgtgg 258
            |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 2915 catacagatatccagacaattctcaaataccatactacagccggagttcaatgcatgtgg 2856

                                                      
Query: 259  gtggaaatggtgcttgctatgtgcaacaaaancatgaggatc 300
            |   ||||||| ||| | ||||||||||||| ||||||||||
Sbjct: 2855 ggcaaaatggtacttaccatgtgcaacaaaatcatgaggatc 2814
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 92/102 (90%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                           
Query: 202     catacagatatccagacaattctcaaataccatactacagc---agttcaatgcatgtgg 258
               |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 4832655 catacagatatccagacaattctcaaataccatactacagccggagttcaatgcatgtgg 4832714

                                                         
Query: 259     gtggaaatggtgcttgctatgtgcaacaaaancatgaggatc 300
               |   ||||||| ||| | ||||||||||||| ||||||||||
Sbjct: 4832715 ggcaaaatggtacttaccatgtgcaacaaaatcatgaggatc 4832756
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>dbj|AK073386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041E22, full
           insert sequence
          Length = 2582

 Score =  121 bits (61), Expect = 2e-24
 Identities = 92/102 (90%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                       
Query: 202 catacagatatccagacaattctcaaataccatactacagc---agttcaatgcatgtgg 258
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 513 catacagatatccagacaattctcaaataccatactacagccggagttcaatgcatgtgg 572

                                                     
Query: 259 gtggaaatggtgcttgctatgtgcaacaaaancatgaggatc 300
           |   ||||||| ||| | ||||||||||||| ||||||||||
Sbjct: 573 ggcaaaatggtacttaccatgtgcaacaaaatcatgaggatc 614
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>gb|AY109543.1| Zea mays CL854_1 mRNA sequence
          Length = 2341

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 171 gaaaatatgtcaacaaangcctctaacatgtcatacagatatccagaca 219
           ||||||||||| ||| | |||||||||  ||||||||||||||||||||
Sbjct: 335 gaaaatatgtcgacacaagcctctaaccggtcatacagatatccagaca 383
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>gb|AC098890.3| Mus musculus BAC clone RP23-122P22 from X, complete sequence
          Length = 202740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     ttgataaagaagtcaaaacta 100
              |||||||||||||||||||||
Sbjct: 164852 ttgataaagaagtcaaaacta 164832
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>gb|AC119861.8| Mus musculus chromosome 3, clone RP23-291P19, complete sequence
          Length = 206094

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     taaagaagtcaaaactaattg 104
              |||||||||||||||||||||
Sbjct: 167903 taaagaagtcaaaactaattg 167923
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>gb|DQ145721.1| Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1
              (ABL1) gene, complete cds
          Length = 176708

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 282    caacaaaancatgaggatcatcagtacatgtc 313
              |||||||  ||| |||||||||||||||||||
Sbjct: 159619 caacaaattcataaggatcatcagtacatgtc 159588
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>gb|U07563.1|HSABLGR3 Human proto-oncogene tyrosine-protein kinase (ABL) gene, exon 1a and
             exons 2-10, complete cds
          Length = 84539

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 282   caacaaaancatgaggatcatcagtacatgtc 313
             |||||||  ||| |||||||||||||||||||
Sbjct: 67314 caacaaattcataaggatcatcagtacatgtc 67283
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>emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chromosome 9, complete
             sequence
          Length = 176466

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 282   caacaaaancatgaggatcatcagtacatgtc 313
             |||||||  ||| |||||||||||||||||||
Sbjct: 94869 caacaaattcataaggatcatcagtacatgtc 94838
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>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208921

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   atagatcacctccacaaggtt 169
             |||||||||||||||||||||
Sbjct: 76364 atagatcacctccacaaggtt 76344
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>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence
          Length = 207908

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    atagatcacctccacaaggtt 169
              |||||||||||||||||||||
Sbjct: 156574 atagatcacctccacaaggtt 156554
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>emb|AL928911.7| Mouse DNA sequence from clone RP23-271N3 on chromosome 2, complete
             sequence
          Length = 93455

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    ttgataaagaagtcaaaacta 100
             |||||||||||||||||||||
Sbjct: 74769 ttgataaagaagtcaaaacta 74749
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>emb|AL671732.15| Mouse DNA sequence from clone RP23-309O6 on chromosome X, complete
             sequence
          Length = 128748

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    ttgataaagaagtcaaaacta 100
             |||||||||||||||||||||
Sbjct: 36939 ttgataaagaagtcaaaacta 36919
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>gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, complete sequence
          Length = 203580

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     atttattgataaagaagtcaaaac 98
              |||| |||||||||||||||||||
Sbjct: 112458 attttttgataaagaagtcaaaac 112481
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>ref|XM_632831.1| Dictyostelium discoideum hypothetical protein (DDB0186799), partial
           mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 91  gtcaaaactaattgctgttattct 114
           ||||||||||||||||||| ||||
Sbjct: 255 gtcaaaactaattgctgtttttct 232
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>gb|AC167971.3| Mus musculus BAC clone RP24-439I22 from chromosome 7, complete sequence
          Length = 198057

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     atttattgataaagaagtcaaaac 98
              ||||||||||||||||| ||||||
Sbjct: 166114 atttattgataaagaagccaaaac 166137
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>gb|AC099597.6| Mus musculus chromosome 17, clone RP23-78K9, complete sequence
          Length = 272221

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  atacagatatccagacaatt 222
            ||||||||||||||||||||
Sbjct: 9827 atacagatatccagacaatt 9846
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>gb|AC140194.2| Mus musculus BAC clone RP23-250K1 from chromosome 16, complete sequence
          Length = 183155

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     aaactaattgctgttattct 114
              ||||||||||||||||||||
Sbjct: 118112 aaactaattgctgttattct 118131
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>emb|CT010484.7| Mouse DNA sequence from clone RP23-296N14 on chromosome 17, complete
             sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   atacagatatccagacaatt 222
             ||||||||||||||||||||
Sbjct: 27382 atacagatatccagacaatt 27401
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>emb|Z82190.1|HS180M12 Human DNA sequence from clone RP1-180M12 on chromosome 22 Contains part
             of the DEPDC5 gene for DEP domain containing 5 and a novel
             pseudogene similar to e(y)2 protein, complete sequence
          Length = 59941

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   gtctcaggtgattcacccac 366
             ||||||||||||||||||||
Sbjct: 11629 gtctcaggtgattcacccac 11610
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>gb|AY029396.1| Campoletis sonorensis ichnovirus segment P, complete sequence
          Length = 11841

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  taccatactacagcagttca 248
            ||||||||||||||||||||
Sbjct: 4546 taccatactacagcagttca 4527
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>emb|BX647485.1|HSM807631 Homo sapiens genomic DNA; cDNA DKFZp686P03110 (from clone
            DKFZp686P03110)
          Length = 7604

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 348  tctcaggtgattcacccaca 367
            ||||||||||||||||||||
Sbjct: 7535 tctcaggtgattcacccaca 7516
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>gb|AC107626.2| Homo sapiens chromosome 3 clone RP11-1008M1, complete sequence
          Length = 179484

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    aaatagatcacctccacaag 166
              ||||||||||||||||||||
Sbjct: 141846 aaatagatcacctccacaag 141827
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>gb|AC097632.2| Homo sapiens chromosome 3 clone RP11-90H15, complete sequence
          Length = 131796

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   tctcaggtgattcacccaca 367
             ||||||||||||||||||||
Sbjct: 33456 tctcaggtgattcacccaca 33475
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>gb|AC156796.2| Mus musculus BAC clone RP24-90N20 from chromosome 9, complete sequence
          Length = 204185

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     ttgataaagaagtcaaaact 99
              ||||||||||||||||||||
Sbjct: 130638 ttgataaagaagtcaaaact 130619
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>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence
          Length = 182452

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    acatttattgataaagaagt 92
             ||||||||||||||||||||
Sbjct: 55993 acatttattgataaagaagt 55974
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>gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chromosome unknown,
             complete sequence
          Length = 188418

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   gtctcaggtgattcacccac 366
             ||||||||||||||||||||
Sbjct: 51901 gtctcaggtgattcacccac 51920
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>gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, complete sequence
          Length = 207333

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    atttattgataaagaagtcaaaac 98
             ||||||||||||||||| ||||||
Sbjct: 30712 atttattgataaagaagccaaaac 30735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,829,271
Number of Sequences: 3902068
Number of extensions: 2829271
Number of successful extensions: 64149
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64066
Number of HSP's gapped (non-prelim): 78
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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