Clone Information

BLAST Search Result

Clone Name	baal17m19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466280.1\| Oryza sativa (japonica cultivar-group), mRNA	492	e-136
2	gb\|AY104201.1\| Zea mays PCO093235 mRNA sequence	305	7e-80
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	163	6e-37
4	dbj\|AP004865.3\| Oryza sativa (japonica cultivar-group) genomic D...	163	6e-37
5	dbj\|AP004144.3\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
6	ref\|XM_463564.1\| Oryza sativa (japonica cultivar-group), predic...	62	2e-06
7	dbj\|AK070098.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	62	2e-06
8	ref\|NM_124362.1\| Arabidopsis thaliana ATP binding / ATPase/ nucl...	60	7e-06
9	dbj\|AK221858.1\| Arabidopsis thaliana mRNA for CLP protease regul...	60	7e-06
10	gb\|AY109008.1\| Zea mays PCO071547 mRNA sequence	56	1e-04
11	ref\|XM_475757.1\| Oryza sativa (japonica cultivar-group), predic...	50	0.007
12	gb\|AC137828.24\| Medicago truncatula clone mth2-6c16, complete se...	50	0.007
13	gb\|AC122730.27\| Medicago truncatula clone mth2-36p5, complete se...	50	0.007
14	dbj\|AK106477.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.007
15	ref\|XM_465056.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.026
16	dbj\|AB025612.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	48	0.026
17	gb\|AC121365.2\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.10
18	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.10
19	emb\|CR457456.7\| Zebrafish DNA sequence from clone CH211-235F6 in...	42	1.6
20	gb\|AC093924.3\| Genomic sequence for Mus musculus, clone RP23-239...	42	1.6
21	gb\|AC020931.6\| Homo sapiens chromosome 19 clone CTD-2240E14, com...	42	1.6
22	ref\|NM_176618.2\| Bos taurus pregnancy-associated glycoprotein 7 ...	42	1.6
23	ref\|NM_176630.2\| Bos taurus pregnancy-associated glycoprotein 21...	42	1.6
24	gb\|AF192338.1\|AF192338 Bos taurus pregnancy-associated glycoprot...	42	1.6
25	gb\|AF020509.1\|AF020509 Bos taurus pregnancy-associated glycoprot...	42	1.6
26	dbj\|AP003558.3\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	1.6
27	gb\|AC173485.1\| Mus musculus BAC clone RP23-59N18 from chromosome...	42	1.6
28	dbj\|AP004249.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	1.6
29	gb\|AC101854.8\| Mus musculus chromosome 1, clone RP23-298H18, com...	40	6.3
30	gb\|AY739390.1\| Hepatitis C virus isolate ThBD-0730 core-envelope...	40	6.3
31	gb\|AC101921.8\| Mus musculus chromosome 15, clone RP24-176G17, co...	40	6.3
32	ref\|XM_953272.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.3
33	ref\|XM_327802.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.3
34	gb\|AE006066.1\| Pasteurella multocida subsp. multocida str. Pm70 ...	40	6.3
35	emb\|CR848674.8\| Zebrafish DNA sequence from clone DKEY-73G17 in ...	40	6.3
36	ref\|XM_743839.1\| Aspergillus fumigatus Af293 hypothetical protei...	40	6.3
37	emb\|CR856020.1\| Paramecium tetraurelia macronuclear, dynamin-rel...	40	6.3
38	emb\|CR524827.16\| Zebrafish DNA sequence from clone CH211-167H17 ...	40	6.3
39	gb\|AC133161.4\| Mus musculus BAC clone RP24-534C7 from chromosome...	40	6.3
40	gb\|AC115292.5\| Mus musculus BAC clone RP23-73F10 from chromosome...	40	6.3
41	emb\|AL355498.10\| Human DNA sequence from clone RP11-112L15 on ch...	40	6.3
42	gb\|AC160964.1\| Mus musculus BAC clone RP24-316G24 from chromosom...	40	6.3
43	gb\|AC161883.6\| Mus musculus BAC clone RP23-91K1 from chromosome ...	40	6.3
44	emb\|CR855277.16\| Zebrafish DNA sequence from clone DKEY-71B5 in ...	40	6.3
45	gb\|AC130472.2\| Homo sapiens chromosome 3 clone RP11-395P16, comp...	40	6.3

>ref|XM_466280.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2001

 Score =  492 bits (248), Expect = e-136
 Identities = 389/436 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgagagtggtgatcttatagcatatggactcattccggagttcattggacgttttcctat 61
            ||||||||| || || |||||||||||||| |||||||| || |||||||| ||||||||
Sbjct: 1494 tgagagtggcgacctaatagcatatggacttattccggaatttattggacggtttcctat 1553

                                                                        
Query: 62   ccttgtcagcttgtcagcactaaatgaggaccaacttgttcaggttctcacagagccaaa 121
            |||||| |||||| |||| ||||| |||||||| ||||||||||||||||  ||||||||
Sbjct: 1554 ccttgttagcttggcagctctaaacgaggaccagcttgttcaggttctcatggagccaaa 1613

                                                                        
Query: 122  gaatgctctaggtaaacaattcaagaaattgttcagcatgaataatgttaagcttcactt 181
             |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 1614 aaatgctctgggtaaacaattcaagaaattattcagcatgaataatgtcaagcttcattt 1673

                                                                        
Query: 182  cacggatgctgcactaagaataattgcccagaaggcaatgtgcaaaaatacaggtgcacg 241
             || ||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 1674 tacagatgctgcacttagaataattgccaagaaggcaatgtccaaaaatacgggtgcacg 1733

                                                                        
Query: 242  gggcttaaggactatccttgagaatattctcatggattccatgtatgagattccagatac 301
             || ||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |
Sbjct: 1734 tggtttaaggactatccttgagaatattctcatggatgctatgtacgagattccagatgc 1793

                                                                        
Query: 302  aaaatctggagagaagcggattgacgcggtggttgtagatgaaggtgcagtaggattggt 361
            ||||||||| |||||||| || || |||||||||||||||||||  ||||| |||   ||
Sbjct: 1794 aaaatctggtgagaagcgaatcgatgcggtggttgtagatgaagacgcagtcggagcagt 1853

                                                                        
Query: 362  ggaccaacctggctgtggagctaaaatcctttatggcgatggtgcatttgatcgttatct 421
            ||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 1854 ggaccaacctggctgcggagctaagatcctttatggcgatggtgcttttgaacgttatct 1913

                            
Query: 422  atctcagataaaggta 437
             || ||||||||||||
Sbjct: 1914 ctcccagataaaggta 1929

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>gb|AY104201.1| Zea mays PCO093235 mRNA sequence
          Length = 973

 Score =  305 bits (154), Expect = 7e-80
 Identities = 270/309 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgagagtggtgatcttatagcatatggactcattccggagttcattggacgttttcctat 61
           ||||||||||||||| ||||| |||||||| || || || || |||||||| || |||||
Sbjct: 539 tgagagtggtgatctaatagcttatggacttatcccagaatttattggacgcttccctat 598

                                                                       
Query: 62  ccttgtcagcttgtcagcactaaatgaggaccaacttgttcaggttctcacagagccaaa 121
           |||||| ||| || | || |||||||||||||| |||||||||||||| |  ||||||||
Sbjct: 599 ccttgtgagcctggccgctctaaatgaggaccagcttgttcaggttctgattgagccaaa 658

                                                                       
Query: 122 gaatgctctaggtaaacaattcaagaaattgttcagcatgaataatgttaagcttcactt 181
           |||||| || || ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 659 gaatgccctgggcaaacaattcaataaattgtttagcatgaataatgttaagcttcactt 718

                                                                       
Query: 182 cacggatgctgcactaagaataattgcccagaaggcaatgtgcaaaaatacaggtgcacg 241
            || |||| |||||| |||||||||| ||| || |||||||  |||||||||||||||||
Sbjct: 719 tacagatggtgcacttagaataattggccaaaaagcaatgtcaaaaaatacaggtgcacg 778

                                                                       
Query: 242 gggcttaaggactatccttgagaatattctcatggattccatgtatgagattccagatac 301
           ||| ||||| ||||||||||| ||||||||||||||||| |||| |||||| |||||| |
Sbjct: 779 gggtttaagaactatccttganaatattctcatggattctatgtttgagatcccagatgc 838

                    
Query: 302 aaaatctgg 310
           |||||||||
Sbjct: 839 aaaatctgg 847

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  163 bits (82), Expect = 6e-37
 Identities = 133/150 (88%)
 Strand = Plus / Plus

                                                                            
Query: 289      agattccagatacaaaatctggagagaagcggattgacgcggtggttgtagatgaaggtg 348
                ||||||||||| |||||||||| |||||||| || || |||||||||||||||||||  |
Sbjct: 21450369 agattccagatgcaaaatctggtgagaagcgaatcgatgcggtggttgtagatgaagacg 21450428

                                                                            
Query: 349      cagtaggattggtggaccaacctggctgtggagctaaaatcctttatggcgatggtgcat 408
                |||| |||   ||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct: 21450429 cagtcggagcagtggaccaacctggctgcggagctaagatcctttatggcgatggtgctt 21450488

                                              
Query: 409      ttgatcgttatctatctcagataaaggtaa 438
                |||| |||||||| || |||||||||||||
Sbjct: 21450489 ttgaacgttatctctcccagataaaggtaa 21450518



 Score =  143 bits (72), Expect = 6e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                            
Query: 171      aagcttcacttcacggatgctgcactaagaataattgcccagaaggcaatgtgcaaaaat 230
                |||||||| || || ||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct: 21450147 aagcttcattttacagatgctgcacttagaataattgccaagaaggcaatgtccaaaaat 21450206

                                                                
Query: 231      acaggtgcacggggcttaaggactatccttgagaatattctcatggat 278
                || |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 21450207 acgggtgcacgtggtttaaggactatccttgagaatattctcatggat 21450254



 Score =  113 bits (57), Expect = 5e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                            
Query: 2        tgagagtggtgatcttatagcatatggactcattccggagttcattggacgttttcctat 61
                ||||||||| || || |||||||||||||| |||||||| || |||||||| ||||||||
Sbjct: 21449760 tgagagtggcgacctaatagcatatggacttattccggaatttattggacggtttcctat 21449819

                                                             
Query: 62       ccttgtcagcttgtcagcactaaatgaggaccaacttgttcaggt 106
                |||||| |||||| |||| ||||| |||||||| |||||||||||
Sbjct: 21449820 ccttgttagcttggcagctctaaacgaggaccagcttgttcaggt 21449864



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 103      aggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagcatga 162
                |||||||||  |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 21450002 aggttctcatggagccaaaaaatgctctgggtaaacaattcaagaaattattcagcatga 21450061

                       
Query: 163      ataatgt 169
                |||||||
Sbjct: 21450062 ataatgt 21450068

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>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020C11
          Length = 163328

 Score =  163 bits (82), Expect = 6e-37
 Identities = 133/150 (88%)
 Strand = Plus / Plus

                                                                         
Query: 289   agattccagatacaaaatctggagagaagcggattgacgcggtggttgtagatgaaggtg 348
             ||||||||||| |||||||||| |||||||| || || |||||||||||||||||||  |
Sbjct: 45296 agattccagatgcaaaatctggtgagaagcgaatcgatgcggtggttgtagatgaagacg 45355

                                                                         
Query: 349   cagtaggattggtggaccaacctggctgtggagctaaaatcctttatggcgatggtgcat 408
             |||| |||   ||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct: 45356 cagtcggagcagtggaccaacctggctgcggagctaagatcctttatggcgatggtgctt 45415

                                           
Query: 409   ttgatcgttatctatctcagataaaggtaa 438
             |||| |||||||| || |||||||||||||
Sbjct: 45416 ttgaacgttatctctcccagataaaggtaa 45445



 Score =  143 bits (72), Expect = 6e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                         
Query: 171   aagcttcacttcacggatgctgcactaagaataattgcccagaaggcaatgtgcaaaaat 230
             |||||||| || || ||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct: 45074 aagcttcattttacagatgctgcacttagaataattgccaagaaggcaatgtccaaaaat 45133

                                                             
Query: 231   acaggtgcacggggcttaaggactatccttgagaatattctcatggat 278
             || |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 45134 acgggtgcacgtggtttaaggactatccttgagaatattctcatggat 45181



 Score =  113 bits (57), Expect = 5e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                         
Query: 2     tgagagtggtgatcttatagcatatggactcattccggagttcattggacgttttcctat 61
             ||||||||| || || |||||||||||||| |||||||| || |||||||| ||||||||
Sbjct: 44687 tgagagtggcgacctaatagcatatggacttattccggaatttattggacggtttcctat 44746

                                                          
Query: 62    ccttgtcagcttgtcagcactaaatgaggaccaacttgttcaggt 106
             |||||| |||||| |||| ||||| |||||||| |||||||||||
Sbjct: 44747 ccttgttagcttggcagctctaaacgaggaccagcttgttcaggt 44791



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                         
Query: 103   aggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagcatga 162
             |||||||||  |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 44929 aggttctcatggagccaaaaaatgctctgggtaaacaattcaagaaattattcagcatga 44988

                    
Query: 163   ataatgt 169
             |||||||
Sbjct: 44989 ataatgt 44995

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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1712_E04
          Length = 110098

 Score =  113 bits (57), Expect = 5e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                          
Query: 2      tgagagtggtgatcttatagcatatggactcattccggagttcattggacgttttcctat 61
              ||||||||| || || |||||||||||||| |||||||| || |||||||| ||||||||
Sbjct: 109713 tgagagtggcgacctaatagcatatggacttattccggaatttattggacggtttcctat 109772

                                                           
Query: 62     ccttgtcagcttgtcagcactaaatgaggaccaacttgttcaggt 106
              |||||| |||||| |||| ||||| |||||||| |||||||||||
Sbjct: 109773 ccttgttagcttggcagctctaaacgaggaccagcttgttcaggt 109817



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                          
Query: 103    aggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagcatga 162
              |||||||||  |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 109955 aggttctcatggagccaaaaaatgctctgggtaaacaattcaagaaattattcagcatga 110014

                     
Query: 163    ataatgt 169
              |||||||
Sbjct: 110015 ataatgt 110021

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>ref|XM_463564.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1878

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 142/179 (79%)
 Strand = Plus / Plus

                                                                        
Query: 39   gagttcattggacgttttcctatccttgtcagcttgtcagcactaaatgaggaccaactt 98
            ||||| |||||||| || || ||||| || || ||| |||| || ||||| || || |||
Sbjct: 1399 gagtttattggacgcttgcccatcctagttagtttgacagctctcaatgaagatcagctt 1458

                                                                        
Query: 99   gttcaggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagc 158
            ||||||||||| ||||| ||||||||| ||||    | ||||| || |||| |||| |||
Sbjct: 1459 gttcaggttcttacagaaccaaagaattctctttccagacaatacaggaaaatgtttagc 1518

                                                                       
Query: 159  atgaataatgttaagcttcacttcacggatgctgcactaagaataattgcccagaaggc 217
             |||| || |||||| | ||||| || |||| |||||| |||||| | ||| |||||||
Sbjct: 1519 ctgaacaaagttaagttacactttactgatggtgcacttagaatagtagccaagaaggc 1577

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>dbj|AK070098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040F17, full
            insert sequence
          Length = 1946

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 142/179 (79%)
 Strand = Plus / Plus

                                                                        
Query: 39   gagttcattggacgttttcctatccttgtcagcttgtcagcactaaatgaggaccaactt 98
            ||||| |||||||| || || ||||| || || ||| |||| || ||||| || || |||
Sbjct: 1080 gagtttattggacgcttgcccatcctagttagtttgacagctctcaatgaagatcagctt 1139

                                                                        
Query: 99   gttcaggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagc 158
            ||||||||||| ||||| ||||||||| ||||    | ||||| || |||| |||| |||
Sbjct: 1140 gttcaggttcttacagaaccaaagaattctctttccagacaatacaggaaaatgtttagc 1199

                                                                       
Query: 159  atgaataatgttaagcttcacttcacggatgctgcactaagaataattgcccagaaggc 217
             |||| || |||||| | ||||| || |||| |||||| |||||| | ||| |||||||
Sbjct: 1200 ctgaacaaagttaagttacactttactgatggtgcacttagaatagtagccaagaaggc 1258

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>ref|NM_124362.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding / protein binding AT5G49840 mRNA,
            complete cds
          Length = 1821

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 117/146 (80%)
 Strand = Plus / Plus

                                                                        
Query: 24   tatggactcattccggagttcattggacgttttcctatccttgtcagcttgtcagcacta 83
            ||||| |||||||| |||||  ||||| | || || ||| | || ||||| || ||| ||
Sbjct: 1357 tatggtctcattcctgagtttgttggaaggttacccatcttagtgagcttatccgcatta 1416

                                                                        
Query: 84   aatgaggaccaacttgttcaggttctcacagagccaaagaatgctctaggtaaacaattc 143
            || || || |||||||| ||||||||||||||||| || | |||  | |||||||| | |
Sbjct: 1417 aacgaagatcaacttgtacaggttctcacagagcctaaaagtgcattgggtaaacagtac 1476

                                      
Query: 144  aagaaattgttcagcatgaataatgt 169
            |||||||||||  ||||||| |||||
Sbjct: 1477 aagaaattgtttcgcatgaacaatgt 1502

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>dbj|AK221858.1| Arabidopsis thaliana mRNA for CLP protease regulatory subunit
           CLPX-like, complete cds, clone: RAFL22-10-E04
          Length = 965

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 117/146 (80%)
 Strand = Plus / Plus

                                                                       
Query: 24  tatggactcattccggagttcattggacgttttcctatccttgtcagcttgtcagcacta 83
           ||||| |||||||| |||||  ||||| | || || ||| | || ||||| || ||| ||
Sbjct: 230 tatggtctcattcctgagtttgttggaaggttacccatcttagtgagcttatccgcatta 289

                                                                       
Query: 84  aatgaggaccaacttgttcaggttctcacagagccaaagaatgctctaggtaaacaattc 143
           || || || |||||||| ||||||||||||||||| || | |||  | |||||||| | |
Sbjct: 290 aacgaagatcaacttgtacaggttctcacagagcctaaaagtgcattgggtaaacagtac 349

                                     
Query: 144 aagaaattgttcagcatgaataatgt 169
           |||||||||||  ||||||| |||||
Sbjct: 350 aagaaattgtttcgcatgaacaatgt 375

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>gb|AY109008.1| Zea mays PCO071547 mRNA sequence
          Length = 1110

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 96  cttgttcaggttctcacagagccaaagaatgc 127
           |||||| |||||||||||||||||||||||||
Sbjct: 468 cttgttgaggttctcacagagccaaagaatgc 499

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>ref|XM_475757.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1221

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 99  gttcaggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagc 158
           |||||||||||||  |||||||| |||||  |||| ||||||| |||||| ||||| |  
Sbjct: 709 gttcaggttctcatggagccaaaaaatgcaataggaaaacaatacaagaagttgtttaaa 768

                            
Query: 159 atgaataatgttaagct 175
           |||||| |||| |||||
Sbjct: 769 atgaatgatgtcaagct 785

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>gb|AC137828.24| Medicago truncatula clone mth2-6c16, complete sequence
          Length = 128575

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 381   gctaaaatcctttatggcgatggtgcatttgatcgttatct 421
             ||||||||||||||||||   |||||||| |||||||||||
Sbjct: 27008 gctaaaatcctttatggcaggggtgcattcgatcgttatct 27048



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                         
Query: 10    gtgatcttatagcatatggactcattccggagttcattggacgttttcctatccttgtca 69
             |||||||||||||||||||  | || || || ||  ||||||| |||||||| |||||||
Sbjct: 25114 gtgatcttatagcatatggtttaatacctgaatttgttggacggtttcctattcttgtca 25173

                       
Query: 70    gcttgtcagc 79
             |  |||||||
Sbjct: 25174 gtctgtcagc 25183

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>gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete sequence
          Length = 127163

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 11   tgatcttatagcatatggactcattccggagttcattggacgttttcctatccttgtcag 70
            ||||||||| |||||||| ||||| || ||||| |||||||| || || ||| | || ||
Sbjct: 3738 tgatcttattgcatatggtctcataccagagtttattggacgattccccatcttagttag 3679

                     
Query: 71   cttgtcagc 79
            |||||||||
Sbjct: 3678 cttgtcagc 3670

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>dbj|AK106477.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C11, full
           insert sequence
          Length = 1446

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 99  gttcaggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagc 158
           |||||||||||||  |||||||| |||||  |||| ||||||| |||||| ||||| |  
Sbjct: 907 gttcaggttctcatggagccaaaaaatgcaataggaaaacaatacaagaagttgtttaaa 966

                            
Query: 159 atgaataatgttaagct 175
           |||||| |||| |||||
Sbjct: 967 atgaatgatgtcaagct 983

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>ref|XM_465056.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1665

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 90   gaccaacttgttcaggttctcacagagccaaagaatgctctagg 133
            |||||||||||| ||||||| ||| | ||||||||||| |||||
Sbjct: 1273 gaccaacttgttgaggttcttacaaaaccaaagaatgccctagg 1316

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>dbj|AB025612.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21G20
          Length = 35238

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 102   caggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgttcagcatg 161
             ||||||||||||||||| || | |||  | |||||||| | ||||||||||||  |||||
Sbjct: 23567 caggttctcacagagcctaaaagtgcattgggtaaacagtacaagaaattgtttcgcatg 23626

                     
Query: 162   aataatgt 169
             || |||||
Sbjct: 23627 aacaatgt 23634

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>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05,
              complete sequence
          Length = 196284

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 100    ttcaggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgtt 154
              ||||||||||||  |||||||| |||||  |||| ||||||| |||||| |||||
Sbjct: 147806 ttcaggttctcatggagccaaaaaatgcaataggaaaacaatacaagaagttgtt 147860

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 100      ttcaggttctcacagagccaaagaatgctctaggtaaacaattcaagaaattgtt 154
                ||||||||||||  |||||||| |||||  |||| ||||||| |||||| |||||
Sbjct: 26296758 ttcaggttctcatggagccaaaaaatgcaataggaaaacaatacaagaagttgtt 26296812

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>emb|CR457456.7| Zebrafish DNA sequence from clone CH211-235F6 in linkage group 23,
             complete sequence
          Length = 146468

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 196   taagaataattgcccagaaggcaat 220
             |||||||||||||||| ||||||||
Sbjct: 26963 taagaataattgcccaaaaggcaat 26939

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>gb|AC093924.3| Genomic sequence for Mus musculus, clone RP23-239M9, from chromosome 17,
              complete sequence
          Length = 166277

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 277    attccatgtatgagattccag 297
              |||||||||||||||||||||
Sbjct: 117527 attccatgtatgagattccag 117507

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>gb|AC020931.6| Homo sapiens chromosome 19 clone CTD-2240E14, complete sequence
          Length = 129048

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 266    tattctcatggattccatgta 286
              |||||||||||||||||||||
Sbjct: 114566 tattctcatggattccatgta 114586

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>ref|NM_176618.2| Bos taurus pregnancy-associated glycoprotein 7 (PAG7), mRNA
          Length = 1211

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 141 ttcaagaaattgttcagcatg 161
           |||||||||||||||||||||
Sbjct: 166 ttcaagaaattgttcagcatg 146

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>ref|NM_176630.2| Bos taurus pregnancy-associated glycoprotein 21 (PAG21), mRNA
          Length = 1314

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 141 ttcaagaaattgttcagcatg 161
           |||||||||||||||||||||
Sbjct: 135 ttcaagaaattgttcagcatg 115

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>gb|AF192338.1|AF192338 Bos taurus pregnancy-associated glycoprotein-21 (PAG-21) mRNA,
           complete cds
          Length = 1314

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 141 ttcaagaaattgttcagcatg 161
           |||||||||||||||||||||
Sbjct: 135 ttcaagaaattgttcagcatg 115

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>gb|AF020509.1|AF020509 Bos taurus pregnancy-associated glycoprotein 7 (PAG7) mRNA,
           complete cds
          Length = 1211

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 141 ttcaagaaattgttcagcatg 161
           |||||||||||||||||||||
Sbjct: 166 ttcaagaaattgttcagcatg 146

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>dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-693A6, complete
             sequence
          Length = 182976

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   acagagccaaagaatgctcta 131
             |||||||||||||||||||||
Sbjct: 62996 acagagccaaagaatgctcta 62976

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>gb|AC173485.1| Mus musculus BAC clone RP23-59N18 from chromosome 17, complete sequence
          Length = 199992

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   attccatgtatgagattccag 297
             |||||||||||||||||||||
Sbjct: 32607 attccatgtatgagattccag 32587

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>dbj|AP004249.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-743I15, complete
              sequences
          Length = 191109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    acagagccaaagaatgctcta 131
              |||||||||||||||||||||
Sbjct: 157982 acagagccaaagaatgctcta 157962

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>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence
          Length = 190474

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 440  gggagacggagcaggaagtg 459
            ||||||||||||||||||||
Sbjct: 7818 gggagacggagcaggaagtg 7799

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>gb|AY739390.1| Hepatitis C virus isolate ThBD-0730 core-envelope 1 protein gene,
           partial cds
          Length = 474

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 gcggattgacgcggtggttg 336
           ||||||||||||||||||||
Sbjct: 276 gcggattgacgcggtggttg 257

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>gb|AC101921.8| Mus musculus chromosome 15, clone RP24-176G17, complete sequence
          Length = 166654

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    gagccaaagaatgctctagg 133
              ||||||||||||||||||||
Sbjct: 139180 gagccaaagaatgctctagg 139161

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>ref|XM_953272.1| Neurospora crassa OR74A hypothetical protein (NCU07517.1) partial
           mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 ccagaaggcaatgtgcaaaa 228
           ||||||||||||||||||||
Sbjct: 906 ccagaaggcaatgtgcaaaa 887

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>ref|XM_327802.1| Neurospora crassa OR74A hypothetical protein (NCU07517.1) partial
           mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 ccagaaggcaatgtgcaaaa 228
           ||||||||||||||||||||
Sbjct: 906 ccagaaggcaatgtgcaaaa 887

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>gb|AE006066.1| Pasteurella multocida subsp. multocida str. Pm70 section 33 of 204 of
            the complete genome
          Length = 11017

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  agaaggcaatgtgcaaaaat 230
            ||||||||||||||||||||
Sbjct: 8371 agaaggcaatgtgcaaaaat 8390

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>emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in linkage group 16,
              complete sequence
          Length = 149652

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    aatgttaagcttcacttcac 184
              ||||||||||||||||||||
Sbjct: 127088 aatgttaagcttcacttcac 127107

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>ref|XM_743839.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g05780) partial
            mRNA
          Length = 2481

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   aggaccaacttgttcaggttctca 111
            ||||||||||||||||||| ||||
Sbjct: 1505 aggaccaacttgttcaggtcctca 1482

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>emb|CR856020.1| Paramecium tetraurelia macronuclear, dynamin-related protein gene
          Length = 2368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  attccagatacaaaatctgg 310
            ||||||||||||||||||||
Sbjct: 1618 attccagatacaaaatctgg 1599

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>emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 in linkage group 16,
             complete sequence
          Length = 153848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   aatgttaagcttcacttcac 184
             ||||||||||||||||||||
Sbjct: 53011 aatgttaagcttcacttcac 53030

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>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    gggagacggagcaggaagtg 459
              ||||||||||||||||||||
Sbjct: 108175 gggagacggagcaggaagtg 108156

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>gb|AC115292.5| Mus musculus BAC clone RP23-73F10 from chromosome 14, complete sequence
          Length = 212983

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    gcttgtcagcactaaatgag 89
             ||||||||||||||||||||
Sbjct: 39869 gcttgtcagcactaaatgag 39888

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>emb|AL355498.10| Human DNA sequence from clone RP11-112L15 on chromosome 6 Contains a
             heparan sulfate (glucosamine) 3-O-sulfotransferase 1
             (HS3ST1) pseudogene, a putative novel gene, a laminin
             receptor  1 (LAMR1) pseudogene and two putative novel
             genes, complete sequence
          Length = 165549

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   agaataattgcccagaaggcaatg 221
             ||||||||||||||||| ||||||
Sbjct: 31939 agaataattgcccagaaagcaatg 31916

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>gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosome 9, complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     ggagttcattggacgttttcctat 61
              |||||||||||| |||||||||||
Sbjct: 105009 ggagttcattggccgttttcctat 105032

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>gb|AC161883.6| Mus musculus BAC clone RP23-91K1 from chromosome 14, complete sequence
          Length = 206274

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    gcttgtcagcactaaatgag 89
             ||||||||||||||||||||
Sbjct: 53669 gcttgtcagcactaaatgag 53650

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>emb|CR855277.16| Zebrafish DNA sequence from clone DKEY-71B5 in linkage group 16,
             complete sequence
          Length = 245559

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   aatgttaagcttcacttcac 184
             ||||||||||||||||||||
Sbjct: 17603 aatgttaagcttcacttcac 17622

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>gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, complete sequence
          Length = 194160

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tatgagattccagatacaaa 304
              ||||||||||||||||||||
Sbjct: 160894 tatgagattccagatacaaa 160913


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,130,702
Number of Sequences: 3902068
Number of extensions: 4130702
Number of successful extensions: 85791
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85672
Number of HSP's gapped (non-prelim): 119
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result