Clone Information

BLAST Search Result

Clone Name	baal17l15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC134886.5\| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom...	178	1e-41
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	178	1e-41
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	178	1e-41
4	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	9e-18
5	dbj\|AP005198.3\| Oryza sativa (japonica cultivar-group) genomic D...	100	9e-18
6	emb\|BX119983.4\| Zebrafish DNA sequence from clone CH211-198G9 in...	46	0.12
7	gb\|AC141876.4\| Mus musculus BAC clone RP24-289M9 from chromosome...	44	0.46
8	emb\|BX897700.1\| Bartonella quintana str. Toulouse, complete genome	42	1.8
9	emb\|BX897699.1\| Bartonella henselae strain Houston-1, complete g...	42	1.8
10	gb\|AF022947.1\| Gallus gallus collapsin 5 mRNA, complete cds	42	1.8
11	ref\|NM_204242.1\| Gallus gallus sema domain, immunoglobulin domai...	42	1.8
12	gb\|AC002328.2\|AC002328 Genomic sequence for Arabidopsis thaliana...	42	1.8
13	emb\|AL845354.13\| Mouse DNA sequence from clone RP23-318L10 on ch...	42	1.8
14	emb\|AL513346.17\| Mouse DNA sequence from clone RP23-170L10 on ch...	42	1.8
15	gb\|CP000038.1\| Shigella sonnei Ss046, complete genome	42	1.8
16	gb\|AC153879.1\| Mus musculus BAC RP23-264C21 (Roswell Park Cance...	40	7.2
17	gb\|AC153727.6\| Mus musculus BAC clone RP23-354L15 from chromosom...	40	7.2
18	gb\|AC102475.7\| Mus musculus chromosome 8, clone RP24-393D2, comp...	40	7.2
19	ref\|XM_458169.1\| Debaryomyces hansenii CBS767 hypothetical prote...	40	7.2
20	gb\|AC134332.2\| Mus musculus BAC clone RP24-385N13 from chromosom...	40	7.2
21	gb\|AC159707.2\| Mus musculus chromosome 1, clone RP24-176K12, com...	40	7.2
22	gb\|AC182234.3\| Pan troglodytes BAC clone CH251-487I22 from chrom...	40	7.2
23	gb\|AC118212.7\| Mus musculus chromosome 6, clone RP24-170E4, comp...	40	7.2
24	gb\|AC125308.3\| Mus musculus BAC clone RP24-481N17 from chromosom...	40	7.2
25	gb\|AC121796.3\| Mus musculus BAC clone RP23-423D22 from chromosom...	40	7.2
26	gb\|AC125218.3\| Mus musculus BAC clone RP23-67F22 from 18, comple...	40	7.2
27	gb\|AC002429.1\| Homo sapiens BAC clone GS1-200K5 from 7, complete...	40	7.2
28	ref\|XM_853208.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
29	ref\|XM_853171.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
30	ref\|XM_853126.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
31	ref\|XM_853088.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
32	ref\|XM_853048.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
33	ref\|XM_853009.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
34	ref\|XM_852965.1\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
35	ref\|XM_533514.2\| PREDICTED: Canis familiaris similar to ubiquili...	40	7.2
36	gb\|AC140914.20\| Medicago truncatula clone mth2-18h17, complete s...	40	7.2
37	emb\|BX537333.1\| Human DNA sequence from clone WI2-88277B6 on chr...	40	7.2
38	gb\|AC182842.3\| Pan troglodytes BAC clone CH251-38C10 from chromo...	40	7.2
39	emb\|CR382135.1\| Debaryomyces hansenii chromosome C of strain CBS...	40	7.2
40	emb\|BX572646.11\| Zebrafish DNA sequence from clone DKEY-245O11 i...	40	7.2
41	gb\|AC079459.30\| Homo sapiens 12 BAC RP11-435O22 (Roswell Park Ca...	40	7.2
42	gb\|AC080096.21\| Homo sapiens 3 BAC RP11-443O18 (Roswell Park Can...	40	7.2
43	gb\|AC104669.6\| Homo sapiens 3 BAC RP11-115I8 (Roswell Park Cance...	40	7.2
44	gb\|AC182468.2\| Pan troglodytes BAC clone CH251-483N21 from chrom...	40	7.2
45	gb\|AC093657.4\| Homo sapiens BAC clone RP11-447B21 from 4, comple...	40	7.2
46	gb\|AC171007.3\| Gallus gallus BAC clone CH261-166I11 from chromos...	40	7.2
47	gb\|AC004129.2\| Homo sapiens BAC clone CTB-136N17 from 7, complet...	40	7.2
48	gb\|AC159468.4\| Mus musculus 10 BAC RP23-335A3 (Roswell Park Canc...	40	7.2
49	gb\|AC145345.3\| Mus musculus BAC clone RP23-343D3 from chromosome...	40	7.2
50	gb\|AC007327.1\|AC007327 Homo sapiens clone RP11-155G7 from 7p14-1...	40	7.2
51	gb\|AY961572.1\| Lysiphlebus testaceipes ribosomal protein L38 (Rp...	40	7.2
52	gb\|AC153522.4\| Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer...	40	7.2
53	emb\|AL807802.22\| Mouse DNA sequence from clone RP23-351B24 on ch...	40	7.2
54	emb\|AL772340.19\| Zebrafish DNA sequence from clone CH211-150G2, ...	40	7.2
55	emb\|AL672171.8\| Zebrafish DNA sequence from clone BUSM1-270G24 i...	40	7.2
56	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	40	7.2
57	gb\|AC149598.2\| Mus musculus BAC clone RP24-119N9 from 18, comple...	40	7.2
58	gb\|AC132947.4\| Mus musculus BAC clone RP24-372N17 from 8, comple...	40	7.2
59	gb\|AC147614.4\| Mus musculus BAC clone RP23-399A18 from 7, comple...	40	7.2
60	gb\|AC163633.4\| Mus musculus BAC clone RP24-177N8 from chromosome...	40	7.2
61	emb\|AL513356.8\| Mouse DNA sequence from clone RP23-193O17 on chr...	40	7.2

>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete
             sequence
          Length = 145714

 Score =  178 bits (90), Expect = 1e-41
 Identities = 156/178 (87%)
 Strand = Plus / Plus

                                                                         
Query: 128   aggttgtaggaggagaagacatctttgccacaattagatggtcacaaaagttgttgtatg 187
             |||||| ||||||||||||||| |||||||| ||||||||||||||||||||  | ||||
Sbjct: 67335 aggttggaggaggagaagacatatttgccacgattagatggtcacaaaagttactatatg 67394

                                                                         
Query: 188   ataatggacagttttctgttgatattccgtttcggtttccacattatgtgaaccctttac 247
             | |||||||||||||||||||||||||| ||||  ||||| || |||||||||||||| |
Sbjct: 67395 acaatggacagttttctgttgatattccttttcaatttccgcaatatgtgaaccctttgc 67454

                                                                       
Query: 248   ctaaaattttcacaaaaaaggagaaaattcagttaactgtgaatagtggtgtgagtaa 305
             | ||| | || |  |||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct: 67455 caaaagtgtttatgaaaaaggaaaaaattcagttgactctgaatagtggtgtgagtaa 67512



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Plus

                                                                         
Query: 22    tacaatactcatgtaattgatgtagatggtaacagtcctgtgaagattgtaaaaactgag 81
             ||||| || ||||||||||||||||| | | |  || | ||||||||||  |||||||||
Sbjct: 67117 tacaaaacccatgtaattgatgtagaggatcaaggtgcagtgaagattgctaaaactgag 67176

                                                               
Query: 82    agtggtggtattctgaagcgccagttttttcaattgacaataccacaggt 131
             ||||| ||| || | |||||||| || |||   |||||||||||||||||
Sbjct: 67177 agtgggggtcttttaaagcgccaattcttttccttgacaataccacaggt 67226



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                         
Query: 436   tactcaggtgatgtgtccggtggagtgcttgtgcagcgctcaacattacgtgactatgac 495
             |||||||||||| | || |||||| |||| ||||| | ||||||||    ||||||||| 
Sbjct: 68484 tactcaggtgatttatctggtggaatgctcgtgcaaccctcaacatcggatgactatgat 68543

                                             
Query: 496   gatagagacattttcagcatttttctcttacc 527
             ||||||||||| ||  |||||||||| |||||
Sbjct: 68544 gatagagacatgttttgcatttttcttttacc 68575

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  178 bits (90), Expect = 1e-41
 Identities = 156/178 (87%)
 Strand = Plus / Minus

                                                                            
Query: 128      aggttgtaggaggagaagacatctttgccacaattagatggtcacaaaagttgttgtatg 187
                |||||| ||||||||||||||| |||||||| ||||||||||||||||||||  | ||||
Sbjct: 16516998 aggttggaggaggagaagacatatttgccacgattagatggtcacaaaagttactatatg 16516939

                                                                            
Query: 188      ataatggacagttttctgttgatattccgtttcggtttccacattatgtgaaccctttac 247
                | |||||||||||||||||||||||||| ||||  ||||| || |||||||||||||| |
Sbjct: 16516938 acaatggacagttttctgttgatattccttttcaatttccgcaatatgtgaaccctttgc 16516879

                                                                          
Query: 248      ctaaaattttcacaaaaaaggagaaaattcagttaactgtgaatagtggtgtgagtaa 305
                | ||| | || |  |||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct: 16516878 caaaagtgtttatgaaaaaggaaaaaattcagttgactctgaatagtggtgtgagtaa 16516821



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                            
Query: 22       tacaatactcatgtaattgatgtagatggtaacagtcctgtgaagattgtaaaaactgag 81
                ||||| || ||||||||||||||||| | | |  || | ||||||||||  |||||||||
Sbjct: 16517216 tacaaaacccatgtaattgatgtagaggatcaaggtgcagtgaagattgctaaaactgag 16517157

                                                                  
Query: 82       agtggtggtattctgaagcgccagttttttcaattgacaataccacaggt 131
                ||||| ||| || | |||||||| || |||   |||||||||||||||||
Sbjct: 16517156 agtgggggtcttttaaagcgccaattcttttccttgacaataccacaggt 16517107



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                            
Query: 436      tactcaggtgatgtgtccggtggagtgcttgtgcagcgctcaacattacgtgactatgac 495
                |||||||||||| | || |||||| |||| ||||| | ||||||||    ||||||||| 
Sbjct: 16515849 tactcaggtgatttatctggtggaatgctcgtgcaaccctcaacatcggatgactatgat 16515790

                                                
Query: 496      gatagagacattttcagcatttttctcttacc 527
                ||||||||||| ||  |||||||||| |||||
Sbjct: 16515789 gatagagacatgttttgcatttttcttttacc 16515758

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  178 bits (90), Expect = 1e-41
 Identities = 156/178 (87%)
 Strand = Plus / Minus

                                                                            
Query: 128      aggttgtaggaggagaagacatctttgccacaattagatggtcacaaaagttgttgtatg 187
                |||||| ||||||||||||||| |||||||| ||||||||||||||||||||  | ||||
Sbjct: 16510631 aggttggaggaggagaagacatatttgccacgattagatggtcacaaaagttactatatg 16510572

                                                                            
Query: 188      ataatggacagttttctgttgatattccgtttcggtttccacattatgtgaaccctttac 247
                | |||||||||||||||||||||||||| ||||  ||||| || |||||||||||||| |
Sbjct: 16510571 acaatggacagttttctgttgatattccttttcaatttccgcaatatgtgaaccctttgc 16510512

                                                                          
Query: 248      ctaaaattttcacaaaaaaggagaaaattcagttaactgtgaatagtggtgtgagtaa 305
                | ||| | || |  |||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct: 16510511 caaaagtgtttatgaaaaaggaaaaaattcagttgactctgaatagtggtgtgagtaa 16510454



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                            
Query: 22       tacaatactcatgtaattgatgtagatggtaacagtcctgtgaagattgtaaaaactgag 81
                ||||| || ||||||||||||||||| | | |  || | ||||||||||  |||||||||
Sbjct: 16510849 tacaaaacccatgtaattgatgtagaggatcaaggtgcagtgaagattgctaaaactgag 16510790

                                                                  
Query: 82       agtggtggtattctgaagcgccagttttttcaattgacaataccacaggt 131
                ||||| ||| || | |||||||| || |||   |||||||||||||||||
Sbjct: 16510789 agtgggggtcttttaaagcgccaattcttttccttgacaataccacaggt 16510740



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                            
Query: 436      tactcaggtgatgtgtccggtggagtgcttgtgcagcgctcaacattacgtgactatgac 495
                |||||||||||| | || |||||| |||| ||||| | ||||||||    ||||||||| 
Sbjct: 16509482 tactcaggtgatttatctggtggaatgctcgtgcaaccctcaacatcggatgactatgat 16509423

                                                
Query: 496      gatagagacattttcagcatttttctcttacc 527
                ||||||||||| ||  |||||||||| |||||
Sbjct: 16509422 gatagagacatgttttgcatttttcttttacc 16509391

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 110/130 (84%)
 Strand = Plus / Plus

                                                                            
Query: 214      ccgtttcggtttccacattatgtgaaccctttacctaaaattttcacaaaaaaggagaaa 273
                ||||| || |||||| ||||||| ||||| || || ||| | ||||  |||| |||||||
Sbjct: 25246749 ccgttccgttttccatattatgttaacccattgccaaaagtattcatgaaaagggagaaa 25246808

                                                                            
Query: 274      attcagttaactgtgaatagtggtgtgagtaaagaggttttattgcaggggaccagccat 333
                |||||||| ||||||||||||||| | ||||||||||||||| ||||||| || ||||| 
Sbjct: 25246809 attcagttgactgtgaatagtggtttcagtaaagaggttttactgcagggaacaagccac 25246868

                          
Query: 334      cccttgaagg 343
                || |||||||
Sbjct: 25246869 ccattgaagg 25246878



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 391      gttgagaattggtcaatcaaagatttcaacttttcatatagtgt 434
                |||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 25247027 gttgagaattggtcaagcaaagatttcaatttttcatacagtgt 25247070

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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0616D06
          Length = 153800

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 110/130 (84%)
 Strand = Plus / Plus

                                                                         
Query: 214   ccgtttcggtttccacattatgtgaaccctttacctaaaattttcacaaaaaaggagaaa 273
             ||||| || |||||| ||||||| ||||| || || ||| | ||||  |||| |||||||
Sbjct: 63420 ccgttccgttttccatattatgttaacccattgccaaaagtattcatgaaaagggagaaa 63479

                                                                         
Query: 274   attcagttaactgtgaatagtggtgtgagtaaagaggttttattgcaggggaccagccat 333
             |||||||| ||||||||||||||| | ||||||||||||||| ||||||| || ||||| 
Sbjct: 63480 attcagttgactgtgaatagtggtttcagtaaagaggttttactgcagggaacaagccac 63539

                       
Query: 334   cccttgaagg 343
             || |||||||
Sbjct: 63540 ccattgaagg 63549



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 391   gttgagaattggtcaatcaaagatttcaacttttcatatagtgt 434
             |||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 63698 gttgagaattggtcaagcaaagatttcaatttttcatacagtgt 63741

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>emb|BX119983.4| Zebrafish DNA sequence from clone CH211-198G9 in linkage group 1,
            complete sequence
          Length = 172227

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 506  ttttcagcatttttctcttacct 528
            |||||||||||||||||||||||
Sbjct: 1920 ttttcagcatttttctcttacct 1898

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>gb|AC141876.4| Mus musculus BAC clone RP24-289M9 from chromosome 6, complete sequence
          Length = 151702

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 416   tcaacttttcatatagtgttta 437
             ||||||||||||||||||||||
Sbjct: 75531 tcaacttttcatatagtgttta 75552

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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 500     gagacattttcagcatttttc 520
               |||||||||||||||||||||
Sbjct: 1399605 gagacattttcagcatttttc 1399585

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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 500     gagacattttcagcatttttc 520
               |||||||||||||||||||||
Sbjct: 1716128 gagacattttcagcatttttc 1716108



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 500     gagacattttcagcatttttc 520
               |||||||||||||||||||||
Sbjct: 1632340 gagacattttcagcatttttc 1632320



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 500     gagacattttcagcatttttc 520
               |||||||||||||||||||||
Sbjct: 1626470 gagacattttcagcatttttc 1626450



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 500     gagacattttcagcatttttc 520
               |||||||||||||||||||||
Sbjct: 1559026 gagacattttcagcatttttc 1559046



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 500     gagacattttcagcatttttc 520
               |||||||||||||||||||||
Sbjct: 1552222 gagacattttcagcatttttc 1552242

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>gb|AF022947.1| Gallus gallus collapsin 5 mRNA, complete cds
          Length = 2615

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 500  gagacattttcagcatttttctctt 524
            |||||||||||||| ||||||||||
Sbjct: 2269 gagacattttcagcttttttctctt 2245

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>ref|NM_204242.1| Gallus gallus sema domain, immunoglobulin domain (Ig), short basic
            domain, secreted, (semaphorin) 3E (SEMA3E), mRNA
          Length = 2615

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 500  gagacattttcagcatttttctctt 524
            |||||||||||||| ||||||||||
Sbjct: 2269 gagacattttcagcttttttctctt 2245

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>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I,
             complete sequence
          Length = 109171

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   tttttcttgcatgaagctgtg 390
             |||||||||||||||||||||
Sbjct: 66641 tttttcttgcatgaagctgtg 66621

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>emb|AL845354.13| Mouse DNA sequence from clone RP23-318L10 on chromosome 2, complete
             sequence
          Length = 178468

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   tggacagttttctgttgatat 212
             |||||||||||||||||||||
Sbjct: 92127 tggacagttttctgttgatat 92147

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>emb|AL513346.17| Mouse DNA sequence from clone RP23-170L10 on chromosome 15, complete
             sequence
          Length = 196912

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    tcctgtgaagattgtaaaaac 77
             |||||||||||||||||||||
Sbjct: 49458 tcctgtgaagattgtaaaaac 49478

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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     ttcagttaactgtgaatagtg 295
               |||||||||||||||||||||
Sbjct: 1391988 ttcagttaactgtgaatagtg 1392008

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>gb|AC153879.1| Mus musculus  BAC RP23-264C21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 182252

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 362   agaaattatttttcttgcatgaag 385
             |||||| |||||||||||||||||
Sbjct: 90476 agaaatgatttttcttgcatgaag 90499

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>gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosome 12, complete
             sequence
          Length = 202733

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 243   tttacctaaaattttcacaaaaaaggag 270
             |||| ||||||||| |||||||||||||
Sbjct: 90705 tttatctaaaatttccacaaaaaaggag 90732

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>gb|AC102475.7| Mus musculus chromosome 8, clone RP24-393D2, complete sequence
          Length = 136660

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 362   agaaattatttttcttgcatgaag 385
             ||||| ||||||||||||||||||
Sbjct: 79320 agaaaatatttttcttgcatgaag 79343

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>ref|XM_458169.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C12265g)
            partial mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 412  gatttcaacttttcatatag 431
            ||||||||||||||||||||
Sbjct: 1285 gatttcaacttttcatatag 1304

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>gb|AC134332.2| Mus musculus BAC clone RP24-385N13 from chromosome 1, complete sequence
          Length = 124525

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    tagagacattttcagcattt 517
              ||||||||||||||||||||
Sbjct: 102412 tagagacattttcagcattt 102431

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>gb|AC159707.2| Mus musculus chromosome 1, clone RP24-176K12, complete sequence
          Length = 79081

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   tagagacattttcagcattt 517
             ||||||||||||||||||||
Sbjct: 45950 tagagacattttcagcattt 45931

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>gb|AC182234.3| Pan troglodytes BAC clone CH251-487I22 from chromosome x, complete
             sequence
          Length = 188826

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   aaagatttcaacttttcata 428
             ||||||||||||||||||||
Sbjct: 85587 aaagatttcaacttttcata 85606

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>gb|AC118212.7| Mus musculus chromosome 6, clone RP24-170E4, complete sequence
          Length = 190612

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    ctgagaaattatttttcttg 378
              ||||||||||||||||||||
Sbjct: 121214 ctgagaaattatttttcttg 121233

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>gb|AC125308.3| Mus musculus BAC clone RP24-481N17 from chromosome 5, complete sequence
          Length = 128910

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ccacattatgtgaacccttt 245
              ||||||||||||||||||||
Sbjct: 123637 ccacattatgtgaacccttt 123656

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>gb|AC121796.3| Mus musculus BAC clone RP23-423D22 from chromosome 18, complete
             sequence
          Length = 158469

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ccacattatgtgaacccttt 245
             ||||||||||||||||||||
Sbjct: 64239 ccacattatgtgaacccttt 64258

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>gb|AC125218.3| Mus musculus BAC clone RP23-67F22 from 18, complete sequence
          Length = 149450

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ccacattatgtgaacccttt 245
             ||||||||||||||||||||
Sbjct: 21700 ccacattatgtgaacccttt 21719

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>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 501   agacattttcagcatttttctctt 524
             ||||||||||||| ||||||||||
Sbjct: 84367 agacattttcagcttttttctctt 84344

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>ref|XM_853208.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 8 (LOC476312), mRNA
          Length = 2174

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 865 cttgtgcagcgctcaacatt 846

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>ref|XM_853171.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 7 (LOC476312), mRNA
          Length = 2129

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 865 cttgtgcagcgctcaacatt 846

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>ref|XM_853126.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 6 (LOC476312), mRNA
          Length = 2081

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 865 cttgtgcagcgctcaacatt 846

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>ref|XM_853088.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 5 (LOC476312), mRNA
          Length = 2126

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 865 cttgtgcagcgctcaacatt 846

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>ref|XM_853048.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 4 (LOC476312), mRNA
          Length = 1550

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 250 cttgtgcagcgctcaacatt 231

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>ref|XM_853009.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 3 (LOC476312), mRNA
          Length = 1991

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 727 cttgtgcagcgctcaacatt 708

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>ref|XM_852965.1| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 2 (LOC476312), mRNA
          Length = 1751

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 838 cttgtgcagcgctcaacatt 819

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>ref|XM_533514.2| PREDICTED: Canis familiaris similar to ubiquilin 1 isoform 1,
           transcript variant 1 (LOC476312), mRNA
          Length = 2165

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cttgtgcagcgctcaacatt 482
           ||||||||||||||||||||
Sbjct: 865 cttgtgcagcgctcaacatt 846

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>gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete sequence
          Length = 129792

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    taaaattttcacaaaaaagg 268
              ||||||||||||||||||||
Sbjct: 112741 taaaattttcacaaaaaagg 112722

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>emb|BX537333.1| Human DNA sequence from clone WI2-88277B6 on chromosome X Contains gene
             LOC257122, complete sequence
          Length = 37959

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   aaagatttcaacttttcata 428
             ||||||||||||||||||||
Sbjct: 10978 aaagatttcaacttttcata 10997

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>gb|AC182842.3| Pan troglodytes BAC clone CH251-38C10 from chromosome x, complete
             sequence
          Length = 206627

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   aaagatttcaacttttcata 428
             ||||||||||||||||||||
Sbjct: 10921 aaagatttcaacttttcata 10940

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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
               hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 412     gatttcaacttttcatatag 431
               ||||||||||||||||||||
Sbjct: 1004936 gatttcaacttttcatatag 1004917

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>emb|BX572646.11| Zebrafish DNA sequence from clone DKEY-245O11 in linkage group 18,
             complete sequence
          Length = 116953

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   cacaaaaaaggagaaaattc 277
             ||||||||||||||||||||
Sbjct: 67128 cacaaaaaaggagaaaattc 67109

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>gb|AC079459.30| Homo sapiens 12 BAC RP11-435O22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 139076

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   gctgagaaattatttttctt 377
             ||||||||||||||||||||
Sbjct: 47616 gctgagaaattatttttctt 47597

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>gb|AC080096.21| Homo sapiens 3 BAC RP11-443O18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 89653

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   aatcaggcaggctgagaaat 367
             ||||||||||||||||||||
Sbjct: 75072 aatcaggcaggctgagaaat 75053

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>gb|AC104669.6| Homo sapiens 3 BAC RP11-115I8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 135933

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tcctgtgaagattgtaaaaa 76
             ||||||||||||||||||||
Sbjct: 37901 tcctgtgaagattgtaaaaa 37882

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>gb|AC182468.2| Pan troglodytes BAC clone CH251-483N21 from chromosome x, complete
             sequence
          Length = 193874

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   aaagatttcaacttttcata 428
             ||||||||||||||||||||
Sbjct: 72398 aaagatttcaacttttcata 72417

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>gb|AC093657.4| Homo sapiens BAC clone RP11-447B21 from 4, complete sequence
          Length = 162689

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   agaaattatttttcttgcat 381
             ||||||||||||||||||||
Sbjct: 88057 agaaattatttttcttgcat 88038

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>gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromosome ul, complete
              sequence
          Length = 223327

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     tgtaaaaactgagagtggtggtat 92
              ||||||||||||||||||| ||||
Sbjct: 160141 tgtaaaaactgagagtggttgtat 160164

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>gb|AC004129.2| Homo sapiens BAC clone CTB-136N17 from 7, complete sequence
          Length = 162701

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   catctttgccacaattagat 166
             ||||||||||||||||||||
Sbjct: 91598 catctttgccacaattagat 91617

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>gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214532

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 362   agaaattatttttcttgcatgaag 385
             |||||| |||||||||||||||||
Sbjct: 17981 agaaatgatttttcttgcatgaag 17958

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>gb|AC145345.3| Mus musculus BAC clone RP23-343D3 from chromosome 7, complete sequence
          Length = 212264

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    ccacattatgtgaacccttt 245
              ||||||||||||||||||||
Sbjct: 128988 ccacattatgtgaacccttt 128969

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>gb|AC007327.1|AC007327 Homo sapiens clone RP11-155G7 from 7p14-15, complete sequence
          Length = 169347

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   agaaattatttttcttgcat 381
             ||||||||||||||||||||
Sbjct: 36120 agaaattatttttcttgcat 36139

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>gb|AY961572.1| Lysiphlebus testaceipes ribosomal protein L38 (RpL38) mRNA,
           complete cds
          Length = 231

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 502 gacattttcagcatttttct 521
           ||||||||||||||||||||
Sbjct: 96  gacattttcagcatttttct 77

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>gb|AC153522.4| Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 238562

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 362    agaaattatttttcttgcatgaag 385
              |||||| |||||||||||||||||
Sbjct: 233393 agaaatgatttttcttgcatgaag 233370

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>emb|AL807802.22| Mouse DNA sequence from clone RP23-351B24 on chromosome 4, complete
             sequence
          Length = 186857

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ccacattatgtgaacccttt 245
             ||||||||||||||||||||
Sbjct: 94985 ccacattatgtgaacccttt 95004

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>emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, complete sequence
          Length = 174176

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   agaaattatttttcttgcat 381
             ||||||||||||||||||||
Sbjct: 22159 agaaattatttttcttgcat 22140

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>emb|AL672171.8| Zebrafish DNA sequence from clone BUSM1-270G24 in linkage group 3
             Contains a CpG island, complete sequence
          Length = 114103

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   attttcagcatttttctctt 524
             ||||||||||||||||||||
Sbjct: 61499 attttcagcatttttctctt 61518

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 504     cattttcagcatttttctct 523
               ||||||||||||||||||||
Sbjct: 6810795 cattttcagcatttttctct 6810776

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>gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, complete sequence
          Length = 161955

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ccacattatgtgaacccttt 245
              ||||||||||||||||||||
Sbjct: 131918 ccacattatgtgaacccttt 131937

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>gb|AC132947.4| Mus musculus BAC clone RP24-372N17 from 8, complete sequence
          Length = 175482

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 362    agaaattatttttcttgcatgaag 385
              ||||| ||||||||||||||||||
Sbjct: 149915 agaaaatatttttcttgcatgaag 149892

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>gb|AC147614.4| Mus musculus BAC clone RP23-399A18 from 7, complete sequence
          Length = 193777

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ccacattatgtgaacccttt 245
              ||||||||||||||||||||
Sbjct: 145663 ccacattatgtgaacccttt 145682

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>gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome 12, complete sequence
          Length = 178326

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 243    tttacctaaaattttcacaaaaaaggag 270
              |||| ||||||||| |||||||||||||
Sbjct: 145724 tttatctaaaatttccacaaaaaaggag 145697

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>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete
              sequence
          Length = 216238

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 419    acttttcatatagtgtttactcag 442
              |||||||||||||||| |||||||
Sbjct: 175346 acttttcatatagtgtgtactcag 175323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,599,613
Number of Sequences: 3902068
Number of extensions: 6599613
Number of successful extensions: 141015
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140673
Number of HSP's gapped (non-prelim): 333
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result