ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17l11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predic... 50 0.001
2emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 50 0.001
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
4emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 50 0.001

>ref|XM_472910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1653

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 14   tgggtccgtgcgatgaatcgaacgcttggaactacac 50
            ||||||| || |||||||| |||||||||||||||||
Sbjct: 1265 tgggtccatgtgatgaatcaaacgcttggaactacac 1301



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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 14    tgggtccgtgcgatgaatcgaacgcttggaactacac 50
             ||||||| || |||||||| |||||||||||||||||
Sbjct: 35337 tgggtccatgtgatgaatcaaacgcttggaactacac 35373



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 14       tgggtccgtgcgatgaatcgaacgcttggaactacac 50
                ||||||| || |||||||| |||||||||||||||||
Sbjct: 24038358 tgggtccatgtgatgaatcaaacgcttggaactacac 24038394



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>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 14   tgggtccgtgcgatgaatcgaacgcttggaactacac 50
            ||||||| || |||||||| |||||||||||||||||
Sbjct: 4608 tgggtccatgtgatgaatcaaacgcttggaactacac 4644


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 461,245
Number of Sequences: 3902068
Number of extensions: 461245
Number of successful extensions: 31016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31004
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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