>MYSP_OPIFE (Q9BMQ6) Paramyosin (Fragment)|
          Length = 638

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 473 TKRNMASAVDSMSKQLEQVSSA---LAATKRHLTKRLENLDGKMDEQVEVSKQIRNEVVD 643
           ++ ++ SAVD + + L+  + +   L A    L    +NL  K +E+ E +  +RN+V  
Sbjct: 201 SRSSLESAVDDLKRSLDDEAKSRFNLQAQLTSLQMDYDNLQAKYEEESEEASNLRNQVSK 260

Query: 644 VKTDLS 661
              DL+
Sbjct: 261 FNADLA 266

>PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS)|
          Length = 5045

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 551  KRHLTKRLENLDGKMDEQVEVSKQIRNEVVDVKTDLSQIGFD 676
            + +L   L +L+  +   V    ++ +E +DV T+LS+ GFD
Sbjct: 3206 RTNLVHSLSSLEASLSNMVSAILKVNSEDIDVNTELSEYGFD 3247

>MYSP_SCHJA (Q05870) Paramyosin (Antigen Sj97)|
          Length = 866

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 476 KRNMASAVDSMSKQLEQVSSA---LAATKRHLTKRLENLDGKMDEQVEVSKQIRNEVVDV 646
           K ++ S VD + + L+  S     L A    L    +NL  K DE+ E +  +RN+V   
Sbjct: 221 KSSLESQVDDLKRSLDDESRNRFNLQAQLTSLQMDYDNLQAKYDEESEEASNLRNQVSKF 280

Query: 647 KTDLSQI 667
             D++ +
Sbjct: 281 NADIAAL 287

>SYS_NEIMB (Q9JY95) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 431

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 20/82 (24%), Positives = 40/82 (48%)
 Frame = +2

Query: 440 KGWSFSDVMFVTKRNMASAVDSMSKQLEQVSSALAATKRHLTKRLENLDGKMDEQVEVSK 619
           +G+ F    F T      +V   +++L+       A++  ++K++  L G+     E ++
Sbjct: 21  RGYDFDTARFDTLEERRKSVQVKTEELQ-------ASRNSISKQIGALKGQGKH--EEAQ 71

Query: 620 QIRNEVVDVKTDLSQIGFDVEA 685
              N+V  +KTDL Q   D++A
Sbjct: 72  AAMNQVAQIKTDLEQAAADLDA 93

>FLA1_BARBA (P35633) Flagellin|
          Length = 374

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/71 (28%), Positives = 39/71 (54%)
 Frame = +2

Query: 446 WSFSDVMFVTKRNMASAVDSMSKQLEQVSSALAATKRHLTKRLENLDGKMDEQVEVSKQI 625
           WS S +M      M++ VD+++   EQV+  +AAT  +LTK  E+LD      V   ++ 
Sbjct: 47  WSISSMMKHDSNTMSAVVDAINLGREQVN--VAATAVNLTK--ESLDDIQKSMVSAREKS 102

Query: 626 RNEVVDVKTDL 658
            ++++ ++  +
Sbjct: 103 DDDIMKIQDSI 113

>MYH13_HUMAN (Q9UKX3) Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)|
            (MyHC-eo)
          Length = 1938

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +2

Query: 494  AVDSMSKQLEQVSSALAATKRHLTKRLENLDGKMDEQVEVSKQIRNEVVDVKTDLSQIGF 673
            A  ++  ++E+  S LA     +++RLE   G    Q+E++K+   E   ++ DL +   
Sbjct: 1128 AEHTLRAKIEKQRSDLARELEEISERLEEASGATSAQIEMNKKREAEFQKMRRDLEEATL 1187

Query: 674  DVEA 685
              EA
Sbjct: 1188 QHEA 1191

>APOA4_RAT (P02651) Apolipoprotein A-IV precursor (Apo-AIV) (ApoA-IV)|
          Length = 391

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 485 MASAVDSMSKQL----EQVSSALAATKRHLTKRLENLDGKMDEQVEVSKQ 622
           +++ +D + K L    E V S L      L K LE+L+ ++D+QVEV ++
Sbjct: 256 VSTNIDQLQKNLAPLVEDVQSKLKGNTEGLQKSLEDLNKQLDQQVEVFRR 305

>LMNA_XENLA (P11048) Lamin-A|
          Length = 665

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 476 KRNMASAVDSMSKQLEQVSSALAATKRHLTKRL------ENLDGKMDEQVEVSKQIRNE 634
           KRN+ + +  +   + ++ ++LA TK+ L   +      EN +  + E++E  K I NE
Sbjct: 151 KRNLENEIRELKAHIAKLEASLADTKKQLQDEMLRRVDTENRNQTLKEELEFQKSIYNE 209

>DMD_CANFA (O97592) Dystrophin|
          Length = 3680

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 506  MSKQLEQVSSALAATKRHLTKR--LENLDGKMDEQVEVSKQIRNEVVDVKTDLSQI 667
            M K++  ++  LAAT   LTKR  +E +   +D +V   K  + E+   K  L  +
Sbjct: 1578 MRKEMNALTEWLAATDMELTKRSAVEGMPSNLDSEVAWGKATQKEIEKQKVHLKSV 1633

>DMD_HUMAN (P11532) Dystrophin|
          Length = 3685

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 506  MSKQLEQVSSALAATKRHLTKR--LENLDGKMDEQVEVSKQIRNEVVDVKTDLSQI 667
            M K++  ++  LAAT   LTKR  +E +   +D +V   K  + E+   K  L  I
Sbjct: 1576 MRKEMNVLTEWLAATDMELTKRSAVEGMPSNLDSEVAWGKATQKEIEKQKVHLKSI 1631

>CARB_PSEPK (Q88DU6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1073

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 273 SHVIGARTFSLIYALHELLELRQYIRQAAIPKHDRP 166
           S+V+G R   ++Y   EL EL++Y+R+A    +D P
Sbjct: 716 SYVLGGRAMEIVY---ELDELKRYLREAVQVSNDSP 748

>TAF8_DROME (Q9VWY6) Transcription initiation factor TFIID subunit 8 (Protein|
           prodos)
          Length = 328

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 273 SYPSSDSAFSPRSQRFNFVKAHYHI*VANRTPE 371
           ++P   +A +P  Q F+F +  YH  VANRT +
Sbjct: 201 AFPPYAAALNPTDQVFDFEELEYHYLVANRTED 233

>MTRD_METTM (P80183) Tetrahydromethanopterin S-methyltransferase subunit D (EC|
           2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M
           methyltransferase subunit D)
          Length = 233

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 AMATHTGVAASKVLILVGAGLTGSI 174
           AMAT TGV     ++  GAGLTG I
Sbjct: 32  AMATATGVGTGTAMLAAGAGLTGLI 56

>MTRD_METTH (O27230) Tetrahydromethanopterin S-methyltransferase subunit D (EC|
           2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M
           methyltransferase subunit D)
          Length = 233

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 AMATHTGVAASKVLILVGAGLTGSI 174
           AMAT TGV     ++  GAGLTG I
Sbjct: 32  AMATATGVGTGTAMLAAGAGLTGLI 56

>DMD_MOUSE (P11531) Dystrophin|
          Length = 3678

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 506  MSKQLEQVSSALAATKRHLTKR--LENLDGKMDEQVEVSKQIRNEVVDVKTDLSQI 667
            M K++  ++  LAAT   LTKR  +E +   +D +V   K  + E+   K  L  +
Sbjct: 1578 MRKEMNVLTEWLAATDTELTKRSAVEGMPSNLDSEVAWGKATQKEIEKQKAHLKSV 1633

>CCNK_HUMAN (O75909) Cyclin-K|
          Length = 357

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 558 CLFVAASAEETCSNCFDMLSTALAILRFV 472
           CLF+A   EET   C D++ TA ++L  V
Sbjct: 99  CLFLAGKVEETPKKCKDIIKTARSLLNDV 127

>CCNK_MOUSE (O88874) Cyclin-K|
          Length = 554

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 558 CLFVAASAEETCSNCFDMLSTALAILRFV 472
           CLF+A   EET   C D++ TA ++L  V
Sbjct: 99  CLFLAGKVEETPKKCKDIIKTARSLLNDV 127

>SH3K1_HUMAN (Q96B97) SH3-domain kinase-binding protein 1 (Cbl-interacting|
           protein of 85 kDa) (Human Src-family kinase-binding
           protein 1) (HSB-1) (CD2-binding protein 3) (CD2BP3)
          Length = 665

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = +2

Query: 491 SAVDSMSKQLEQVSSALAATKRHLTKRLENLDGKMDEQVEVSKQIRNEVVDVKTDL 658
           +AV+ +  Q+ ++ S +   K    + ++ L  ++DE+ ++  +++ EV D+K  L
Sbjct: 607 AAVEELRTQVRELRSIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKAL 662

>YP2C_STAAU (P14503) Hypothetical 27.7 kDa protein|
          Length = 236

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +2

Query: 512 KQLEQVSSALAATKRHLTKRLENLDGKMDEQVEVSKQIRNEVVDV 646
           KQL+++ S       + +++LENL  ++ E++E S+Q RNE  ++
Sbjct: 39  KQLDRIESVANEKNENESEKLENLKNRI-EELEKSEQDRNERTNI 82

>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain|
           (VL); Vitellin light chain rare isoform; Vitellin heavy
           chain rare isoform; Vitellin heavy chain (VH)]
          Length = 1782

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 171 DRASEWPPVGCIGGAPGAHEGRKSRRRFERL*HGSYPSSDSAFSPRSQRFNFVKAHYH 344
           D  +EWP  G +  A        +++  +      Y SS S+ S  S  FNF + H H
Sbjct: 304 DSGAEWPRAGAMRPAQSILYSLSTKQMTKH-----YESSSSSSSSESHEFNFPEQHEH 356

>Y4XP_RHISN (P55708) Putative cysteine synthase (EC 2.5.1.47) (O-acetylserine|
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase)
          Length = 336

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  RRKGMAMATHTGVAASKVLILVGAG-LTGSIV 177
           RRKG+ +   TG A  K L  +GAG LTG++V
Sbjct: 260 RRKGLLVGGSTGGAIYKALEFIGAGKLTGTVV 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,561,584
Number of Sequences: 219361
Number of extensions: 1679917
Number of successful extensions: 5803
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5799
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)