>STAN_DROME (Q9V5N8) Protocadherin-like wing polarity protein stan precursor|
            (Protein starry night) (Protein flamingo)
          Length = 3574

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 5    SXPQMVPSSTFPMNTTIFRPNHYGWQPYMSPAVSEFVPGPAWSNNHPVAYTPSPHIADTI 184
            S P  +P+ T  +  T     +    P + P+V++ V  P WS+  P AY  SP      
Sbjct: 3221 STPAYLPNITEHVQATTPPELNVVQSPQLFPSVNKPVYAPRWSSQLPDAYLQSPPNIGRW 3280

Query: 185  SQSL-ADSHVLSDAAVVSIGPS 247
            SQ   +D+  +   A ++I P+
Sbjct: 3281 SQDTGSDNEHVHGQAKMTISPN 3302

>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 71  YGWQPYMSPAVSEFV---PGPAWSNNHPVAYTPSPHIADTISQSLADSHVLSDAAVVSIG 241
           YG+QP+ S  V  +V   P P  S+    A  P P      +  +A+S +    A  + G
Sbjct: 485 YGFQPHQSYEVPRYVPHPPPPPTSHQAAQAQPPPPGTQAPEAHCVAESTIPEAGAAGNSG 544

Query: 242 PSLDSN 259
           P  D+N
Sbjct: 545 PREDTN 550

>HEX_ADE40 (P11819) Hexon protein (Late protein 2)|
          Length = 923

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 14  QMVPSSTFP--MNTTI-FRPNHYGWQPYMSPAVSEFVPGPAWSNNHPVAYTPSPHIADTI 184
           Q+V ++T+    N T+ F+ N+ G+  YM PA+ E   G A+  N+P      P I  T 
Sbjct: 775 QVVDTTTYTEYQNVTLPFQHNNSGFVGYMGPAIRE---GQAYPANYPY-----PLIGQTA 826

Query: 185 SQSLADSHVLSD 220
             SL     L D
Sbjct: 827 VPSLTQKKFLCD 838

>ZN408_HUMAN (Q9H9D4) Zinc finger protein 408 (PR-domain zinc finger protein 17)|
          Length = 720

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 68  HYGWQPYMSPAVSEFVPGPAWSNNHPVAYTPSPHIADTISQSLADSHVL 214
           H G +PY  P  ++  P       H +++T   H+     ++L D H L
Sbjct: 518 HTGERPYRCPHCADAFPQLPELRRHLISHTGEAHLCPVCGKALRDPHTL 566

>UBP5_YEAST (P39944) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 5)
           (Ubiquitin-specific-processing protease 5)
           (Deubiquitinating enzyme 5)
          Length = 805

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +2

Query: 17  MVPSSTFPMNTTIFRPN---HYGWQPYMSPAVSEFVPGPAWSNNHPVAYTPSPHIADTIS 187
           MV  +T P+ TT+ RP    +Y   P         +P P+ + N P     SPH   T+S
Sbjct: 325 MVSMNTQPLLTTVQRPQLPLYYSDLP--------IIPQPSPNRNSPTVQKFSPHPPTTLS 376

Query: 188 QSLADSHVLSDAAVVS-IGPSLDSNMA 265
           +    S + + A  V  I P + +  A
Sbjct: 377 KLNTPSTIQNKANTVERISPDIRAAQA 403

>NEUR4_MOUSE (Q8BZL1) Sialidase-4 (EC 3.2.1.18) (Neuraminidase 4)|
           (N-acetyl-alpha-neuraminidase 4)
          Length = 501

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
 Frame = +2

Query: 11  PQMVPSSTFPMNTTIFRPNHYG----WQPYMSPAVSEFVPGPAWS-NNHPVAYTPSPHIA 175
           P   P S  P N  +  P   G    W P    +    +  P W   +HP       H+ 
Sbjct: 352 PLCYPQSRSPENHGL-EPGSDGDKTSWTPECPMSSDSMLQSPTWLLYSHPAGRRARLHMG 410

Query: 176 DTISQSLADSHVLSDAAVVSIGPSLDSNMA 265
             +S+S  D H  ++  V+  GPS  S++A
Sbjct: 411 IYLSRSPLDPHSWTEPWVIYEGPSGYSDLA 440

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 23  PSSTFPMNTTIFRPN---HYGWQPYMSPAVSEFVPGPAWSNNHPVAYTPSPHIADTISQS 193
           PS   P+  + + P+   +Y   PY       + P PA +     A T SP  A   + S
Sbjct: 401 PSVYQPVPASSYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPS 460

Query: 194 LADSHVLSDAAVVSIGPS 247
            A ++  + +A  S GPS
Sbjct: 461 PAPNYTPTPSAAYSGGPS 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,822,917
Number of Sequences: 219361
Number of extensions: 1569132
Number of successful extensions: 3575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3567
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)