ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal17i12 |
|---|---|
| Clone Library Name | barley_pub |
>FABZ_GEOSL (P61453) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase| (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase) Length = 150 Score = 34.7 bits (78), Expect = 0.059 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +3 Query: 93 GDPLAVQSAVSGCSKIIYCATARSTITGDL 182 GD L ++ +SGC + I+C +AR+T+ G L Sbjct: 105 GDQLRIEVTISGCKRGIWCFSARATVNGKL 134
>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate| repeat-containing protein) Length = 1247 Score = 33.1 bits (74), Expect = 0.17 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 189 VDNQGVRNVSKAFQDYYNEMAQLRAGKSSKSKLLIAKFKSAKSXKGWEVNQGSYFP 356 VD+QG+ S Y L GK+ K+ LL AK + S K + NQ +P Sbjct: 712 VDSQGLSGCSPRDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYP 767
>BLVRB_BOVIN (P52556) Flavin reductase (EC 1.5.1.30) (FR) (NADPH-dependent| diaphorase) (NADPH-flavin reductase) (FLR) (Biliverdin reductase B) (EC 1.3.1.24) (BVR-B) (Biliverdin-IX beta-reductase) (Green heme-binding protein) (GHBP) Length = 205 Score = 31.2 bits (69), Expect = 0.65 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = +3 Query: 24 LVRDDAEVIDMLPRSVDIAVGDVGDPLAVQSAVSGCSKIIYCATARSTITGDLNRVDNQG 203 LVRD + + P+ + VGDV P V V+G +I R+ ++ V ++G Sbjct: 32 LVRDPSRLPSEGPQPAHVVVGDVRQPADVDKTVAGQDAVIVLLGTRNDLSP--TTVMSEG 89 Query: 204 VRNVSKAFQ 230 +N+ A + Sbjct: 90 AQNIVAAMK 98
>BLVRB_HUMAN (P30043) Flavin reductase (EC 1.5.1.30) (FR) (NADPH-dependent| diaphorase) (NADPH-flavin reductase) (FLR) (Biliverdin reductase B) (EC 1.3.1.24) (BVR-B) (Biliverdin-IX beta-reductase) (Green heme-binding protein) (GHBP) Length = 205 Score = 30.8 bits (68), Expect = 0.85 Identities = 20/69 (28%), Positives = 32/69 (46%) Frame = +3 Query: 24 LVRDDAEVIDMLPRSVDIAVGDVGDPLAVQSAVSGCSKIIYCATARSTITGDLNRVDNQG 203 LVRD + + PR + VGDV V V+G +I R+ ++ V ++G Sbjct: 32 LVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSP--TTVMSEG 89 Query: 204 VRNVSKAFQ 230 RN+ A + Sbjct: 90 ARNIVAAMK 98
>FGFR1_RAT (Q04589) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (MFR) Length = 822 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -3 Query: 96 RQHRQQRCPPTWEACRSPRHRP---LLTKDLXHC 4 R++ Q R PP E C +P H P L +KDL C Sbjct: 570 REYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSC 603
>FGFR1_MOUSE (P16092) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (MFR) Length = 822 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -3 Query: 96 RQHRQQRCPPTWEACRSPRHRP---LLTKDLXHC 4 R++ Q R PP E C +P H P L +KDL C Sbjct: 570 REYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSC 603
>FGFR1_HUMAN (P11362) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (Fms-like tyrosine kinase 2) (c-fgr) (CD331 antigen) Length = 822 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -3 Query: 96 RQHRQQRCPPTWEACRSPRHRP---LLTKDLXHC 4 R++ Q R PP E C +P H P L +KDL C Sbjct: 570 REYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSC 603
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 29.3 bits (64), Expect = 2.5 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = +3 Query: 24 LVRDDAEVIDMLPRSVDIAVGDVGDPLAVQSAVSGCSKIIYCATARSTITGDLNRVDNQG 203 +V+ ++E + PRS DI P+AV++ +G S+ R +GD + QG Sbjct: 572 VVKPESEKEKLKPRSDDIPTTSTSTPMAVETKPNG-SRTTEEPLKRMGKSGDDGSQEPQG 630 Query: 204 VRNVSKAFQDYYNEMAQLRAGKS 272 +R+ + +E A AG S Sbjct: 631 IRHPAIFSTKIGDEAAAAAAGAS 653
>UNC5A_MOUSE (Q8K1S4) Netrin receptor UNC5A precursor (Unc-5 homolog A) (Unc-5| homolog 1) Length = 898 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 61 PGRWTSLLAMLAILWLCNRPCQAAARLSIAQPRAQPLPGTSTELI 195 PG W +LL ++ WL Q +A + A P+PG + +L+ Sbjct: 5 PGLWPALLGIVLTAWLRGSGAQQSATV------ANPVPGANPDLL 43
>UNC5A_HUMAN (Q6ZN44) Netrin receptor UNC5A precursor (Unc-5 homolog A) (Unc-5| homolog 1) Length = 842 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 61 PGRWTSLLAMLAILWLCNRPCQAAARLSIAQPRAQPLPGTSTELI 195 PG W +LL ++ WL Q +A + A P+PG + +L+ Sbjct: 5 PGLWPALLGIVLAAWLRGSGAQQSATV------ANPVPGANPDLL 43
>FABZ_GEOMG (Q39T45) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase| (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase) Length = 150 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +3 Query: 93 GDPLAVQSAVSGCSKIIYCATARSTITG 176 GD L ++ A +GC + I+C +A++ + G Sbjct: 105 GDQLRIEVAATGCKRGIWCFSAKAIVKG 132
>YABI_ECOLI (P30149) Inner membrane protein yabI| Length = 254 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/33 (51%), Positives = 18/33 (54%) Frame = +2 Query: 65 VGGHRCWRCWRSSGCAIGRVRLQQDYLLRNRAL 163 VGG CWR WR SG A R+ YL R R L Sbjct: 190 VGGWLCWRLWR-SGKATDRL---SHYLSRGRLL 218
>Y661_MYCPN (P75130) Hypothetical protein MG447 homolog (K05_orf499)| Length = 549 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 132 SKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNEMA 251 ++II A A+ + +L++VD Q V+ FQ ++NE A Sbjct: 158 TQIIVLAIAKEWLQFNLDKVDEQHHVQVADQFQHFFNEKA 197
>GRP75_CHICK (Q5ZM98) Stress-70 protein, mitochondrial precursor (75 kDa glucose| regulated protein) (GRP 75) Length = 675 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 124 QAAARLSIAQPRAQPLPGTSTELITKESGTSARLSRITTMRWLSSGLVKAA 276 +AAARL + PR P+P T +G S + R + R +S +K A Sbjct: 6 RAAARLPLLLPRGGPVPAVPGLAQTFWNGLSQNVLRAASSRKYASEAIKGA 56
>SSEB_SHIFL (P0AFZ2) Protein sseB| Length = 258 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/36 (27%), Positives = 20/36 (55%) Frame = +3 Query: 51 DMLPRSVDIAVGDVGDPLAVQSAVSGCSKIIYCATA 158 + +PR + + +G+ G+PL+ Q + G +I A Sbjct: 113 EFMPREISLLIGEEGNPLSSQEILEGGESLILSEVA 148
>SSEB_ECOLI (P0AFZ1) Protein sseB| Length = 258 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/36 (27%), Positives = 20/36 (55%) Frame = +3 Query: 51 DMLPRSVDIAVGDVGDPLAVQSAVSGCSKIIYCATA 158 + +PR + + +G+ G+PL+ Q + G +I A Sbjct: 113 EFMPREISLLIGEEGNPLSSQEILEGGESLILSEVA 148
>GP85_TRYCR (Q03877) 85 kDa surface antigen precursor| Length = 714 Score = 28.1 bits (61), Expect = 5.5 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = +1 Query: 73 TSLLAMLAILWLCNRPCQAAA 135 ++ L +L ++W+C PC+AAA Sbjct: 8 SAALHLLVVMWMCCGPCEAAA 28
>UNC5A_RAT (O08721) Netrin receptor UNC5A precursor (Unc-5 homolog A) (Unc-5| homolog 1) Length = 898 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 61 PGRWTSLLAMLAILWLCNRPCQAAARLSIAQPRAQPLPGTSTELI 195 PG W LL ++ WL Q +A + A P+PG + +L+ Sbjct: 5 PGLWPVLLGIVLAAWLRGSGAQQSATV------ANPVPGANPDLL 43
>RRF_MYCMO (Q6KIN5) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 183 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 177 DLNRVDNQGVRNVSKAFQDYYNEMAQLRAGKSSKSKLLIAKF 302 +LN N+ + KA Q Y N++A++ AGK++ + KF Sbjct: 2 ELNFYTNKVKLEMEKAVQTYSNQIAKISAGKANPKLISGIKF 43
>RPOM_SCHPO (O13993) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) Length = 1120 Score = 27.3 bits (59), Expect = 9.4 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Frame = +3 Query: 42 EVIDMLPRSVDIAVGDVGDP--LAVQSAVSGCSKIIYCATARSTITGDLNRVDNQGVRNV 215 E ID+ V + G+ GD LA Q + + + +S LNR + Q +NV Sbjct: 230 ESIDLPIDEVSLEFGNQGDTFNLARQKLLEKSAILSAAEVWKSEHESVLNRGNLQVPKNV 289 Query: 216 SKAFQDYYNEMAQL 257 S F +Y ++ QL Sbjct: 290 SSLFYSWYVQLEQL 303
>BLVRB_MOUSE (Q923D2) Flavin reductase (EC 1.5.1.30) (FR) (NADPH-dependent| diaphorase) (NADPH-flavin reductase) (FLR) (Biliverdin reductase B) (EC 1.3.1.24) (BVR-B) (Biliverdin-IX beta-reductase) Length = 205 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = +3 Query: 24 LVRDDAEVIDMLPRSVDIAVGDVGDPLAVQSAVSGCSKIIYCATARSTITGDLNRVDNQG 203 LVRD + + P+ + VGDV V V+G +I + ++ V ++G Sbjct: 32 LVRDSSRLPSEGPQPAHVVVGDVRQAADVDKTVAGQEAVIVLLGTGNDLSP--TTVMSEG 89 Query: 204 VRNVSKAFQ 230 RN+ A + Sbjct: 90 TRNIVTAMK 98
>PT122_SACBA (O13374) Protein PET122, mitochondrial precursor| Length = 260 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 70 WTSLLAMLAILWLCNRPCQAAARLSIAQPRAQPLPGTSTELITKESG 210 W+ L + A+LW P QA L+ + + LP T E++ K G Sbjct: 209 WSLPLLLSAVLWHVPGPAQARRVLAEFRQCYRGLPLTDAEVVIKRRG 255
>RK122_SECCE (Q06036) 50S ribosomal protein L12-2, chloroplast precursor| (CL12-2) Length = 174 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = +1 Query: 127 AAARLSIAQPRAQPLPGTSTELITKESGTSARLSRITTMRWLSSGLVKAAR 279 AAA L A P+ T +++ +E +SAR++ I +R L++ +K A+ Sbjct: 88 AAAGLRAAAVEEAPVEQTEFDVVIEEVPSSARIATIKIVRALTNLALKEAK 138
>RK121_SECCE (Q06030) 50S ribosomal protein L12-1, chloroplast precursor| (CL12-1) Length = 174 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = +1 Query: 127 AAARLSIAQPRAQPLPGTSTELITKESGTSARLSRITTMRWLSSGLVKAAR 279 AAA L A P+ T +++ +E +SAR++ I +R L++ +K A+ Sbjct: 88 AAAGLRAAAVEEAPVEQTEFDVVIEEVPSSARIATIKIVRALTNLALKEAK 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,902,027 Number of Sequences: 219361 Number of extensions: 946808 Number of successful extensions: 3054 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2975 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3053 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
