>VPAP_PRVKA (P36702) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (UL42 homolog)
          Length = 384

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/64 (34%), Positives = 25/64 (39%)
 Frame = +1

Query: 310 DPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMTTPVGSRPCIGS 489
           DP T   AP GA        + +  A    G  AA      RP A  M TP+  RP   S
Sbjct: 322 DPATVPAAPEGA--------AATVAAACGAGASAAPAAGDKRPAAPRMYTPIAKRPRAAS 373

Query: 490 GTTG 501
           G  G
Sbjct: 374 GEGG 377

>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
 Frame = +1

Query: 310 DPKTEVEAPAGAETEARASPS------------TSTTAGVRGGREAASRLCRSRPR-AGV 450
           D     EAPA A T A+A P+            T+TTA  +    A  R+    PR AG 
Sbjct: 539 DSADSEEAPA-AMTAAQAKPALKIPQTKACPKKTNTTASAK---VAPVRVGTQPPRKAGT 594

Query: 451 MTTPVGSRPCIGSGTTGLPCSPTQRPA 531
            T+P GS P +  G        TQRPA
Sbjct: 595 ATSPAGSSPAVAGG--------TQRPA 613

>TACC3_HUMAN (Q9Y6A5) Transforming acidic coiled-coil-containing protein 3|
           (ERIC-1)
          Length = 838

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
 Frame = +1

Query: 286 ASEKL---CTHDPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMT 456
           ASE L   C  + + + E P GAE E +A          R G   A     + P   +  
Sbjct: 198 ASETLEDPCRTESQHKAETPHGAEEECKAETPHGAEEECRHGGVCAPAAVATSPPGAIPK 257

Query: 457 TPVGSRPCIG------------------SGTTGLPCSPTQRPASAAP 543
              G  P  G                   GT  L C+ T  P S AP
Sbjct: 258 EACGGAPLQGLPGEALGCPAGVGTPVPADGTQTLTCAHTSAPESTAP 304

>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2|
          Length = 913

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
 Frame = +1

Query: 271 ALSAAASEKLCTHDPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGV 450
           AL  A +  +     + E EA    E E R +      A       AA+++  S+P A V
Sbjct: 137 ALMEAQARDVVEAKQRAEDEARRKVEEEQRIAAEKMEAANRAAEEAAAAKVAASQPAAEV 196

Query: 451 MTTPVGSRPCIGSG----TTGLPCSPTQRPASA 537
              P   RP   +     T   P S    P SA
Sbjct: 197 RAEPASERPAAAAAPAPRTDARPQSAAAAPRSA 229

>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
 Frame = -1

Query: 506  GKPVVPLPMQGLEPTGVVITPAR-GRDRQSREA--------ASLPPLTPAVVEVEGDALA 354
            G P    P  G    G  + P+  G+  Q+ ++        ++  P   + +   G+   
Sbjct: 1435 GSPTTRAPASGGNIFGQAVKPSVFGQPAQAGDSGGSIFGGGSASTPFGSSSIFGGGNTQG 1494

Query: 353  SVSAPAGASTSVFGSCVHNFSDAAADNA 270
            +V APA  STS+FG  V   S AAA  A
Sbjct: 1495 AVGAPAAGSTSIFGQKVFGQSSAAAPAA 1522

>MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin) (GP100)
          Length = 862

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = +1

Query: 325 VEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMTTPVGSRPCIGSGTTGL 504
           V  P  + +   A+PS S+T   R G         S+P          S+P   SG+T  
Sbjct: 588 VPTPGASTSSQPATPSGSSTQTPRPGT--------SQPMVPTPGASTSSQPATPSGSTQT 639

Query: 505 PCSPTQRPASAAPWQCVG 558
           P   T +P +  P   VG
Sbjct: 640 PKPGTSQPTTTGPISGVG 657

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
 Frame = -1

Query: 557 PTHCHGAADAGLCVGLHGKPVVPLPMQGLEPTGVVITPA-------RGRDRQSREAASLP 399
           PT   G  + G  + + GKP +P+P   LEP G +   A       +G+  Q  +A+S+ 
Sbjct: 287 PTELGGLNNKGERLKIKGKPKIPVPYVDLEPQGSLQNTAIFNQPGGKGKGDQKPKASSVS 346

Query: 398 PLT--------PAVVEVEGDALASV 348
             T        P V E   + +AS+
Sbjct: 347 ISTTPIPLVKRPTVKEPSQEEIASM 371

>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -1

Query: 542 GAADAGLCVGLHGKPVVPLPMQGLEPTGVVITPARGRDR-QSREAASLPPLTPAVVEVEG 366
           G  D G   G    P  P P  GL     ++ P       QS+ AA+ PP  PAV     
Sbjct: 21  GRGDRGNGAGPGPAPPPPPPRGGLRD---ILNPVSSNSAVQSQAAAAAPPPPPAVASSSL 77

Query: 365 DALASVSAPAGASTSVFGSCVHNFS 291
             +A+ S P  +ST+   +  H+ S
Sbjct: 78  HGIAA-SVPPPSSTNSMRATPHSSS 101

>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)|
          Length = 326

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
 Frame = +1

Query: 304 THDPKTEVEAPAGAETEARASPST--------STTAGVRGGREAASRLCRSRPRAGVMTT 459
           TH+P T         + A  SP+T        S+T G   G    S   RS+   G  T 
Sbjct: 73  THNPATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPSPSPRSKGALGNYTW 132

Query: 460 PVGSRPCI 483
             GS+PC+
Sbjct: 133 ANGSQPCV 140

>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C|
           subunit) (Vacuolar proton pump C subunit)
          Length = 714

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +1

Query: 304 THDPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMTTPVGSRPCI 483
           +H+P+ E +     E  A A PSTS TA      E  S+   S   A        +    
Sbjct: 197 SHEPEPEFDVCPCDECFACAPPSTSATASTLLADECYSQTASSMLSATRCALSTVAAIAT 256

Query: 484 GSGTTGLPCSPTQRPASAAPWQCVGGG 564
           GSG    P   T   A+AA     GGG
Sbjct: 257 GSGLGNGP--STSAAAAAAASNSSGGG 281

>IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol|
           1,4,5-trisphosphate 3-kinase C) (InsP 3-kinase C)
           (IP3K-C)
          Length = 683

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 397 GGREAASRLCRSRPRAGVMTTPVGSRPCIGSGTTGLPCSPTQRPASAAPW 546
           G   AA+R+    PR G    P   RP  G+G      +P  RP    PW
Sbjct: 16  GALPAAARMGLEAPRGGRRRQPGQQRPGPGAG------APAGRPEGGGPW 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,199,690
Number of Sequences: 219361
Number of extensions: 1119472
Number of successful extensions: 4575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4565
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)