>gb|AY368235.2| Burkholderia cepacia phage Bcep43, complete genome
          Length = 48024

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 477  ctgcatcggcagcggcaccacgggcttgccgtgca 511
            |||||| |||||||||||||||||| || ||||||
Sbjct: 5878 ctgcatgggcagcggcaccacgggcgtggcgtgca 5844

>gb|AF543311.2| Burkholderia cepacia phage Bcep781, complete genome
          Length = 48247

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 477  ctgcatcggcagcggcaccacgggcttgccgtgca 511
            |||||| |||||||||||||||||| || ||||||
Sbjct: 5904 ctgcatgggcagcggcaccacgggcgtggcgtgca 5870

>ref|NM_192093.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 332 ccccggccggagcggagacgg 352
           |||||||||||||||||||||
Sbjct: 569 ccccggccggagcggagacgg 589

>ref|NM_192526.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 564

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 gagacggaggcgagggcgtcg 366
           |||||||||||||||||||||
Sbjct: 401 gagacggaggcgagggcgtcg 381

>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete
              sequence
          Length = 137220

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 212    ggcagtggcgaggcggaggcg 232
              |||||||||||||||||||||
Sbjct: 111448 ggcagtggcgaggcggaggcg 111468

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 212      ggcagtggcgaggcggaggcg 232
                |||||||||||||||||||||
Sbjct: 17389071 ggcagtggcgaggcggaggcg 17389091

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 212      ggcagtggcgaggcggaggcg 232
                |||||||||||||||||||||
Sbjct: 17382612 ggcagtggcgaggcggaggcg 17382632

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 332      ccccggccggagcggagacgg 352
                |||||||||||||||||||||
Sbjct: 28297058 ccccggccggagcggagacgg 28297078



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 346      gagacggaggcgagggcgtcg 366
                |||||||||||||||||||||
Sbjct: 22750957 gagacggaggcgagggcgtcg 22750977

>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    ccccggccggagcggagacgg 352
              |||||||||||||||||||||
Sbjct: 131565 ccccggccggagcggagacgg 131585

>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 332   ccccggccggagcggagacgg 352
             |||||||||||||||||||||
Sbjct: 12158 ccccggccggagcggagacgg 12178

>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0024F06
          Length = 129402

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    gagacggaggcgagggcgtcg 366
              |||||||||||||||||||||
Sbjct: 127669 gagacggaggcgagggcgtcg 127689

>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0712E02
          Length = 158084

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   gagacggaggcgagggcgtcg 366
             |||||||||||||||||||||
Sbjct: 68346 gagacggaggcgagggcgtcg 68366

>dbj|AK107232.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E05, full
           insert sequence
          Length = 1019

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 212 ggcagtggcgaggcggaggcg 232
           |||||||||||||||||||||
Sbjct: 241 ggcagtggcgaggcggaggcg 221

>dbj|AK099180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103B06, full
           insert sequence
          Length = 686

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 gagacggaggcgagggcgtcg 366
           |||||||||||||||||||||
Sbjct: 439 gagacggaggcgagggcgtcg 419

>dbj|AK071353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094M23, full
           insert sequence
          Length = 754

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 gagacggaggcgagggcgtcg 366
           |||||||||||||||||||||
Sbjct: 455 gagacggaggcgagggcgtcg 435

>dbj|AK063543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C12, full
           insert sequence
          Length = 723

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 212 ggcagtggcgaggcggaggcg 232
           |||||||||||||||||||||
Sbjct: 419 ggcagtggcgaggcggaggcg 439

>dbj|AK062283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C08, full
           insert sequence
          Length = 1583

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 332 ccccggccggagcggagacgg 352
           |||||||||||||||||||||
Sbjct: 544 ccccggccggagcggagacgg 564

>ref|XM_369409.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG06055.4) partial mRNA
          Length = 1044

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 505 ccgtgcagcccgacacaaag 524
           ||||||||||||||||||||
Sbjct: 106 ccgtgcagcccgacacaaag 87

>gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, complete sequence
          Length = 171509

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 250   ggcaggcgcggaggcacggtggcg 273
             ||||||||||||||||||| ||||
Sbjct: 95966 ggcaggcgcggaggcacggaggcg 95943

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 511     agcccgacacaaaggccagcatcg 534
               ||||||||||| ||||||||||||
Sbjct: 3802008 agcccgacacacaggccagcatcg 3802031

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     cgtgcggcgcggctgctcga 176
               ||||||||||||||||||||
Sbjct: 2851487 cgtgcggcgcggctgctcga 2851468

>gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, complete sequence
          Length = 197826

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 250    ggcaggcgcggaggcacggtggcg 273
              ||||||||||||||||||| ||||
Sbjct: 177601 ggcaggcgcggaggcacggaggcg 177578

>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 525    gccagcatcggcggcgccgt 544
              ||||||||||||||||||||
Sbjct: 824550 gccagcatcggcggcgccgt 824569

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     agcaggctgcccagcgcgac 99
              ||||||||||||||||||||
Sbjct: 105537 agcaggctgcccagcgcgac 105556

>gb|AC010066.9| Drosophila melanogaster 3L BAC RPCI98-25O1 (Roswell Park Cancer Institute
              Drosophila BAC library) complete sequence
          Length = 176056

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 543    gtggcagtgtgttggtggcggcga 566
              ||||||||||||||||||| ||||
Sbjct: 132421 gtggcagtgtgttggtggccgcga 132398

>gb|AC093454.3| Drosophila melanogaster 3L BAC RP98-23K2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 168479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 543    gtggcagtgtgttggtggcggcga 566
              ||||||||||||||||||| ||||
Sbjct: 137922 gtggcagtgtgttggtggccgcga 137945

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 488     gcggcaccacgggcttgccg 507
               ||||||||||||||||||||
Sbjct: 2428344 gcggcaccacgggcttgccg 2428363

>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence
          Length = 197615

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   ggtgatgacgacaccggtcg 466
             ||||||||||||||||||||
Sbjct: 20299 ggtgatgacgacaccggtcg 20280

>ref|NM_206382.1| Drosophila melanogaster CG5151-RB, transcript variant B (CG5151),
           mRNA
          Length = 3066

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 543 gtggcagtgtgttggtggcggcga 566
           ||||||||||||||||||| ||||
Sbjct: 101 gtggcagtgtgttggtggccgcga 124

>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 524     ggccagcatcggcggcgccgtggc 547
               ||||||||||||||| ||||||||
Sbjct: 2356441 ggccagcatcggcggtgccgtggc 2356418



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    tcgaggccccggccggagcg 345
              ||||||||||||||||||||
Sbjct: 909031 tcgaggccccggccggagcg 909050

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 118     cacaagcccgagggcggccg 137
               ||||||||||||||||||||
Sbjct: 1637858 cacaagcccgagggcggccg 1637877

>gb|AE004664.1| Pseudomonas aeruginosa PAO1, section 225 of 529 of the complete
            genome
          Length = 11613

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  cctgcgcgtgcggcgcggct 170
            ||||||||||||||||||||
Sbjct: 5701 cctgcgcgtgcggcgcggct 5682

>gb|AF540993.1| Pseudomonas aeruginosa isolate 2-164 pyoverdin biosynthetic locus,
             partial sequence
          Length = 77740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   cctgcgcgtgcggcgcggct 170
             ||||||||||||||||||||
Sbjct: 17452 cctgcgcgtgcggcgcggct 17433

>gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 107706

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    ccaaagggcataaggcagtg 218
              ||||||||||||||||||||
Sbjct: 102623 ccaaagggcataaggcagtg 102642

>gb|AE003528.3| Drosophila melanogaster chromosome 3L, section 57 of 83 of the complete
              sequence
          Length = 283815

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 543    gtggcagtgtgttggtggcggcga 566
              ||||||||||||||||||| ||||
Sbjct: 128469 gtggcagtgtgttggtggccgcga 128446

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     cctgcgcgtgcggcgcggct 170
               ||||||||||||||||||||
Sbjct: 3794323 cctgcgcgtgcggcgcggct 3794304

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 82      caggctgcccagcgcgacgccgttggag 109
               |||||||||||||| ||||||| |||||
Sbjct: 2385722 caggctgcccagcgagacgccgatggag 2385695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,563,463
Number of Sequences: 3902068
Number of extensions: 3563463
Number of successful extensions: 69010
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67662
Number of HSP's gapped (non-prelim): 1348
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)