>UVRC_DEIRA (Q9RUN0) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 617

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 15/31 (48%), Positives = 24/31 (77%)
 Frame = +2

Query: 377 AMLKQQLAVAAQLEDYKEAARLRDSLRLFEE 469
           A LK+ + VAAQ +D+++AARLRD ++  E+
Sbjct: 198 ARLKEDMKVAAQGQDFEQAARLRDRVQAVEK 228

>UVRC_CAMJR (Q5HTL6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 600

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +2

Query: 335 DKTAAAFLLRSQKYAMLKQQLAVAAQLEDYKEAARLRDSLRLFEEEE 475
           D+   A L  S     L++Q+ V AQ E+Y+EAA++RD + + ++ E
Sbjct: 193 DEAIHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLE 239

>UVRC_CAMJE (Q9PN51) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 600

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +2

Query: 335 DKTAAAFLLRSQKYAMLKQQLAVAAQLEDYKEAARLRDSLRLFEEEE 475
           D+   A L  S     L++Q+ V AQ E+Y+EAA++RD + + ++ E
Sbjct: 193 DEAIHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLE 239

>UVRC_PELCD (Q3A734) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 612

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +2

Query: 365 SQKYAMLKQQLAVAAQLEDYKEAARLRDSLRLFEE 469
           S+    L+ Q+A AA+   ++EAARLRD LR  E+
Sbjct: 200 SEVVESLQHQMAAAAERMAFEEAARLRDQLRAIEQ 234

>V33P_ADE41 (P19416) 33 kDa phosphoprotein|
          Length = 217

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 11  ARPPASKKPRRS---VAYPIASPPNSNSIWFPGRWERMQWVGLSSPPAAPTAVWMRRRPK 181
           A  P+SK+P RS         SPP    +    RW+ +   G    P APT    +R  K
Sbjct: 72  AAAPSSKEPARSQPPTGKVGPSPPRPGLLKASRRWDTVSIAGSPPAPVAPT----KRSEK 127

Query: 182 TTR 190
           TTR
Sbjct: 128 TTR 130

>UVRC_NITEU (Q820N6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 604

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
 Frame = +2

Query: 338 KTAAAFLLRSQKYAM--LKQQLAVAAQLEDYKEAARLRD---SLRLFEEEE 475
           K+AA FL   Q   +  ++Q++  A+  +DY++AA+LRD   +LR  +E++
Sbjct: 193 KSAAMFLQGKQDEVLKTIEQKMFTASDQQDYEQAAQLRDQMQALRKIQEKQ 243

>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 11  ARPPASKKPRRSVAYPIASPPNSNSIWFPGRWERMQWVGLSSPPAAP 151
           A P   + P +   +P+ SPPN N  ++P   +  Q    + P  AP
Sbjct: 4   APPYNPQSPTQQPRFPVYSPPNKNRSYYPNNDQYQQHAPQTPPAFAP 50

>TRC5_ECOLI (P27190) DNA primase traC (EC 2.7.7.-) (Replication primase)|
          Length = 1448

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 2    RHEARPPASKKPRRSVAYPIASPPNSNSIWFPGRWERMQ--WVGLSSPPAAPTAVW 163
            R +A+P A K  R+ +  P      + S+    RW+R Q  W       AAP A W
Sbjct: 897  RQQAQPQAEKPERQYINVPYKEKDEAKSL--GARWDRQQQSWYVPPGTDAAPFAKW 950

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +2

Query: 11   ARPPASKKPRRSVAYPIASPPNSNSIWFP------GRWERMQWVG 127
            A+PP   +P  S AYP A PP   + + P       RW R +  G
Sbjct: 903  AKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947

>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +2

Query: 11   ARPPASKKPRRSVAYPIASPPNSNSIWFP------GRWERMQWVG 127
            A+PP   +P  S AYP A PP   + + P       RW R +  G
Sbjct: 903  AKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947

>UVRC_HALSA (Q9HMU5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 590

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 383 LKQQLAVAAQLEDYKEAARLRDSLRLFE 466
           L++++A AAQ E ++ AA LRD L + E
Sbjct: 213 LRREMAAAAQAEAFERAANLRDRLAVVE 240

>HVRA_RHOCA (P42505) Trans-acting regulatory protein hvrA|
          Length = 102

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 32  KPRRSVAYPIASPPNSNSIWFPGRWERMQWV 124
           KPR++VA   A+P N +  W  GR  + +WV
Sbjct: 58  KPRKTVAAKYANPANPSETW-TGRGRKPKWV 87

>V33P_ADE40 (P11805) 33 kDa phosphoprotein|
          Length = 211

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 14  RPPASKKPRRSVAYPIASP--PNSNSIWFPGRWERMQWVGLSSPPAAPTAVWMRRRPKTT 187
           + P+ KKP RS       P  P   S+    RW+ +   G  + PAAPT    +R  KT 
Sbjct: 69  KAPSFKKPVRSQPPKTIPPLPPQPCSLKASRRWDTVSIAGSPTAPAAPT----KRLEKTP 124

Query: 188 R 190
           R
Sbjct: 125 R 125

>YACH_BACSU (P37569) Hypothetical protein yacH|
          Length = 185

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 380 MLKQQLAVAAQLEDYKEAARLRDSLRLFEE 469
           MLK++L      E+++ AA +RD +RL E+
Sbjct: 144 MLKKELESLIHQEEFENAAHVRDQIRLLEQ 173

>UVRC_MYCTU (P67426) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 646

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 383 LKQQLAVAAQLEDYKEAARLRDSL 454
           L+QQ+  AA+  D++ AARLRD L
Sbjct: 214 LEQQMNAAAEQLDFERAARLRDDL 237

>UVRC_MYCBO (P67427) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 646

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 383 LKQQLAVAAQLEDYKEAARLRDSL 454
           L+QQ+  AA+  D++ AARLRD L
Sbjct: 214 LEQQMNAAAEQLDFERAARLRDDL 237

>LSPA_VIBCH (Q9KU46) Lipoprotein signal peptidase (EC 3.4.23.36)|
           (Prolipoprotein signal peptidase) (Signal peptidase II)
           (SPase II)
          Length = 171

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 104 WERMQWVGLSSPPAAPTAVWMRRRPKTTRW 193
           W+R  + G++       A WMRR P + +W
Sbjct: 72  WQRWLFTGIAFVVTGMLAYWMRRLPASDKW 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,816,254
Number of Sequences: 219361
Number of extensions: 531402
Number of successful extensions: 1976
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)