ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPR3A_HUMAN (Q16821) Protein phosphatase 1 regulatory subunit 3A... 33 0.72
2GDE1_YEAST (Q02979) Glycerophosphodiester phosphodiesterase GDE1... 30 6.1

>PPR3A_HUMAN (Q16821) Protein phosphatase 1 regulatory subunit 3A (Protein|
           phosphatase 1 glycogen-associated regulatory subunit)
           (Protein phosphatase type-1 glycogen targeting subunit)
          Length = 1122

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 20/72 (27%), Positives = 39/72 (54%)
 Frame = -2

Query: 346 IFIGISEYRLSNVATVLWTQVFPFRLSFVKLLTFVIGAAAKLLETFLPESSFIPTT*LPK 167
           I++G++E +  N  T+L  Q    ++   K+    IGA+ + L T L E + IPT  +  
Sbjct: 522 IYLGVNEKQRKNFQTILHDQ--ERKMGNPKISVAGIGASNRDLATLLSEHTAIPTRAITA 579

Query: 166 SLANTMGSNVLW 131
            ++++  +N+ W
Sbjct: 580 DVSHSPRTNLSW 591



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>GDE1_YEAST (Q02979) Glycerophosphodiester phosphodiesterase GDE1 (EC 3.1.4.46)|
          Length = 1223

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 192  NEDSGKKVSSNFAAAPITKVRSLTKESLKGNTCVH---KTVATLESLYSEMPMNIG 350
            N+ +GK  +++++   +   ++  K + KGN   H    +  TL+ L+ ++P N+G
Sbjct: 1001 NDPNGKSNNAHWSDNRMRLTKTFKKNNFKGNARGHSIASSFVTLKELFKKIPANVG 1056


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,190,388
Number of Sequences: 219361
Number of extensions: 1851144
Number of successful extensions: 4336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4335
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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