ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predic... 190 4e-45
2emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 190 4e-45
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
4emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 190 4e-45
5ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predic... 121 3e-24
6dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
7ref|XM_472911.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
8dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
9ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC5... 42 2.1
10gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome... 42 2.1
11gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 42 2.1
12emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13 42 2.1
13gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complet... 40 8.1
14gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, comple... 40 8.1
15gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, compl... 40 8.1
16emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chr... 40 8.1
17emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 o... 40 8.1
18emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in... 40 8.1
19gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 8.1
20gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine ph... 40 8.1
21gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosom... 40 8.1
22gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosom... 40 8.1
23emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 i... 40 8.1
24gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 ... 40 8.1
25gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds 40 8.1
26emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chr... 40 8.1

>ref|XM_472910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1653

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Plus

                                                                        
Query: 15   tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74
            ||||||| || |||||||| ||||||||||||||||| || ||  | ||| | || ||| 
Sbjct: 1265 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 1324

                                                                        
Query: 75   aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134
            |||| ||||| ||||||||  ||| ||||||||| ||||| | |||| |||| ||||| |
Sbjct: 1325 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 1384

                                                                        
Query: 135  gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194
              |||||||||||| |||| |||||||||||||||||  |||||||||||||||||||| 
Sbjct: 1385 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 1444

                                                                        
Query: 195  ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254
            | |||||||| || ||||| || ||||| ||| |||||||    ||||| ||| ||||||
Sbjct: 1445 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 1504

                                                                        
Query: 255  caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314
            ||||  |||  ||||||||||| |||| ||||||||  ||| | ||||||||||||||||
Sbjct: 1505 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 1564

                        
Query: 315  tcaaagttatat 326
            ||||| ||||||
Sbjct: 1565 tcaaaattatat 1576



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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Plus

                                                                         
Query: 15    tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74
             ||||||| || |||||||| ||||||||||||||||| || ||  | ||| | || ||| 
Sbjct: 35337 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 35396

                                                                         
Query: 75    aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134
             |||| ||||| ||||||||  ||| ||||||||| ||||| | |||| |||| ||||| |
Sbjct: 35397 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 35456

                                                                         
Query: 135   gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194
               |||||||||||| |||| |||||||||||||||||  |||||||||||||||||||| 
Sbjct: 35457 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 35516

                                                                         
Query: 195   ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254
             | |||||||| || ||||| || ||||| ||| |||||||    ||||| ||| ||||||
Sbjct: 35517 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 35576

                                                                         
Query: 255   caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314
             ||||  |||  ||||||||||| |||| ||||||||  ||| | ||||||||||||||||
Sbjct: 35577 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 35636

                         
Query: 315   tcaaagttatat 326
             ||||| ||||||
Sbjct: 35637 tcaaaattatat 35648



 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Plus

                                                                         
Query: 74    aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133
             ||||||||||| ||||||||  |||| |||||||| ||||| | ||||||||| || || 
Sbjct: 30521 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 30580

                                                                         
Query: 134   ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193
              | |||||||||||| |||| |||||| ||||| ||||  ||||||||||||||||||| 
Sbjct: 30581 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 30640

                                                                         
Query: 194   gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253
              | ||||||||||| || || || ||||| |||||||| ||  | ||||| ||    |||
Sbjct: 30641 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 30700

                                                                         
Query: 254   acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313
             || ||  |||| ||||||||||| |||| |||||| |  ||| | |||||||| ||||||
Sbjct: 30701 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 30760

                          
Query: 314   ttcaaagttatat 326
             |||||| ||||||
Sbjct: 30761 ttcaaaattatat 30773



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 292   ctgcgaccctgagagccagtggttcaa 318
             ||||||||| |||||||||||||||||
Sbjct: 39827 ctgcgacccggagagccagtggttcaa 39853



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Plus

                                                                            
Query: 15       tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74
                ||||||| || |||||||| ||||||||||||||||| || ||  | ||| | || ||| 
Sbjct: 24038358 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 24038417

                                                                            
Query: 75       aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134
                |||| ||||| ||||||||  ||| ||||||||| ||||| | |||| |||| ||||| |
Sbjct: 24038418 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 24038477

                                                                            
Query: 135      gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194
                  |||||||||||| |||| |||||||||||||||||  |||||||||||||||||||| 
Sbjct: 24038478 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 24038537

                                                                            
Query: 195      ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254
                | |||||||| || ||||| || ||||| ||| |||||||    ||||| ||| ||||||
Sbjct: 24038538 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 24038597

                                                                            
Query: 255      caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314
                ||||  |||  ||||||||||| |||| ||||||||  ||| | ||||||||||||||||
Sbjct: 24038598 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 24038657

                            
Query: 315      tcaaagttatat 326
                ||||| ||||||
Sbjct: 24038658 tcaaaattatat 24038669



 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Plus

                                                                            
Query: 74       aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133
                ||||||||||| ||||||||  |||| |||||||| ||||| | ||||||||| || || 
Sbjct: 24033542 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 24033601

                                                                            
Query: 134      ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193
                 | |||||||||||| |||| |||||| ||||| ||||  ||||||||||||||||||| 
Sbjct: 24033602 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 24033661

                                                                            
Query: 194      gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253
                 | ||||||||||| || || || ||||| |||||||| ||  | ||||| ||    |||
Sbjct: 24033662 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 24033721

                                                                            
Query: 254      acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313
                || ||  |||| ||||||||||| |||| |||||| |  ||| | |||||||| ||||||
Sbjct: 24033722 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 24033781

                             
Query: 314      ttcaaagttatat 326
                |||||| ||||||
Sbjct: 24033782 ttcaaaattatat 24033794



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 292      ctgcgaccctgagagccagtggttcaa 318
                ||||||||| |||||||||||||||||
Sbjct: 24042848 ctgcgacccggagagccagtggttcaa 24042874



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>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Plus

                                                                        
Query: 15   tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74
            ||||||| || |||||||| ||||||||||||||||| || ||  | ||| | || ||| 
Sbjct: 4608 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 4667

                                                                        
Query: 75   aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134
            |||| ||||| ||||||||  ||| ||||||||| ||||| | |||| |||| ||||| |
Sbjct: 4668 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 4727

                                                                        
Query: 135  gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194
              |||||||||||| |||| |||||||||||||||||  |||||||||||||||||||| 
Sbjct: 4728 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 4787

                                                                        
Query: 195  ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254
            | |||||||| || ||||| || ||||| ||| |||||||    ||||| ||| ||||||
Sbjct: 4788 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 4847

                                                                        
Query: 255  caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314
            ||||  |||  ||||||||||| |||| ||||||||  ||| | ||||||||||||||||
Sbjct: 4848 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 4907

                        
Query: 315  tcaaagttatat 326
            ||||| ||||||
Sbjct: 4908 tcaaaattatat 4919



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 154/190 (81%)
 Strand = Plus / Plus

                                                                       
Query: 137 tgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcggcc 196
           |||||||||||| |||| |||||| ||||| ||||  |||||||||||||||||||  | 
Sbjct: 16  tgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttcaact 75

                                                                       
Query: 197 gaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatcaca 256
           ||||||||||| || || || ||||| |||||||| ||  | ||||| ||    ||||| 
Sbjct: 76  gaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatcacg 135

                                                                       
Query: 257 acggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggttc 316
           ||  |||| ||||||||||| |||| |||||| |  ||| | |||||||| |||||||||
Sbjct: 136 acaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtggttc 195

                     
Query: 317 aaagttatat 326
           ||| ||||||
Sbjct: 196 aaaattatat 205



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 292  ctgcgaccctgagagccagtggttcaa 318
            ||||||||| |||||||||||||||||
Sbjct: 9090 ctgcgacccggagagccagtggttcaa 9116



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>ref|XM_472909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1665

 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Plus

                                                                        
Query: 74   aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133
            ||||||||||| ||||||||  |||| |||||||| ||||| | ||||||||| || || 
Sbjct: 1330 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 1389

                                                                        
Query: 134  ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193
             | |||||||||||| |||| |||||| ||||| ||||  ||||||||||||||||||| 
Sbjct: 1390 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 1449

                                                                        
Query: 194  gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253
             | ||||||||||| || || || ||||| |||||||| ||  | ||||| ||    |||
Sbjct: 1450 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 1509

                                                                        
Query: 254  acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313
            || ||  |||| ||||||||||| |||| |||||| |  ||| | |||||||| ||||||
Sbjct: 1510 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 1569

                         
Query: 314  ttcaaagttatat 326
            |||||| ||||||
Sbjct: 1570 ttcaaaattatat 1582



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>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full
            insert sequence
          Length = 1992

 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Plus

                                                                        
Query: 74   aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133
            ||||||||||| ||||||||  |||| |||||||| ||||| | ||||||||| || || 
Sbjct: 1340 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 1399

                                                                        
Query: 134  ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193
             | |||||||||||| |||| |||||| ||||| ||||  ||||||||||||||||||| 
Sbjct: 1400 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 1459

                                                                        
Query: 194  gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253
             | ||||||||||| || || || ||||| |||||||| ||  | ||||| ||    |||
Sbjct: 1460 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 1519

                                                                        
Query: 254  acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313
            || ||  |||| ||||||||||| |||| |||||| |  ||| | |||||||| ||||||
Sbjct: 1520 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 1579

                         
Query: 314  ttcaaagttatat 326
            |||||| ||||||
Sbjct: 1580 ttcaaaattatat 1592



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>ref|XM_472911.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 292  ctgcgaccctgagagccagtggttcaa 318
            ||||||||| |||||||||||||||||
Sbjct: 1548 ctgcgacccggagagccagtggttcaa 1574



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>dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E08, full
           insert sequence
          Length = 2877

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 292 ctgcgaccctgagagccagtggttcaa 318
           ||||||||| |||||||||||||||||
Sbjct: 384 ctgcgacccggagagccagtggttcaa 358



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>ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC548975 (LOC548975), mRNA
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  ctggctgcagcaaatcctgtt 152
            |||||||||||||||||||||
Sbjct: 1520 ctggctgcagcaaatcctgtt 1540



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>gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome 9, complete sequence
          Length = 163817

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 558   ttctttttctgtcaaaacaaa 578
             |||||||||||||||||||||
Sbjct: 15761 ttctttttctgtcaaaacaaa 15741



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>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 558   ttctttttctgtcaaaacaaa 578
             |||||||||||||||||||||
Sbjct: 38567 ttctttttctgtcaaaacaaa 38587



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>emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  ctggctgcagcaaatcctgtt 152
            |||||||||||||||||||||
Sbjct: 1520 ctggctgcagcaaatcctgtt 1540



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>gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complete sequence
          Length = 129837

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 559   tctttttctgtcaaaacaaatcac 582
             ||||||||||||||| ||||||||
Sbjct: 61996 tctttttctgtcaaagcaaatcac 62019



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>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence
          Length = 205885

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 559   tctttttctgtcaaaacaaatcac 582
             ||||||||||||||| ||||||||
Sbjct: 39742 tctttttctgtcaaagcaaatcac 39719



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>gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, complete sequence
          Length = 175672

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 559    tctttttctgtcaaaacaaatcac 582
              ||||||||||||||| ||||||||
Sbjct: 163907 tctttttctgtcaaagcaaatcac 163884



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>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
             sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   taagcactttctttttctgt 569
             ||||||||||||||||||||
Sbjct: 95267 taagcactttctttttctgt 95286



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>emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 on chromosome 20p12 Contains
             the HAO1 gene for hydroxyacid oxidase (glycolate oxidase)
             1, ESTs, STSs and GSSs, complete sequence
          Length = 98569

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 552   agcactttctttttctgtca 571
             ||||||||||||||||||||
Sbjct: 45094 agcactttctttttctgtca 45075



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>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
              complete sequence
          Length = 218866

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 555    actttctttttctgtcaaaa 574
              ||||||||||||||||||||
Sbjct: 214283 actttctttttctgtcaaaa 214302



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>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gcatgccaggtgaggcctct 358
              ||||||||||||||||||||
Sbjct: 150021 gcatgccaggtgaggcctct 150040



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>gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine phosphatase-rho (Ptprt) gene,
            exons 10 and 11 and partial cds
          Length = 5957

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 335  agaggcatgccaggtgaggcctct 358
            |||||||||| |||||||||||||
Sbjct: 3400 agaggcatgcaaggtgaggcctct 3377



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>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence
          Length = 195204

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   ctttctttttctgtcaaaac 575
             ||||||||||||||||||||
Sbjct: 52437 ctttctttttctgtcaaaac 52418



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>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence
          Length = 208487

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   ctttctttttctgtcaaaac 575
             ||||||||||||||||||||
Sbjct: 58232 ctttctttttctgtcaaaac 58251



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>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
             complete sequence
          Length = 197927

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   actttctttttctgtcaaaa 574
             ||||||||||||||||||||
Sbjct: 37335 actttctttttctgtcaaaa 37316



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>gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 IMAGE:6866732),
            complete cds
          Length = 2642

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 132  ctggctgcagcaaatcctgt 151
            ||||||||||||||||||||
Sbjct: 1548 ctggctgcagcaaatcctgt 1567



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>gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds
          Length = 2616

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 132  ctggctgcagcaaatcctgt 151
            ||||||||||||||||||||
Sbjct: 1543 ctggctgcagcaaatcctgt 1562



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>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete
              sequence
          Length = 187043

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 335    agaggcatgccaggtgaggcctct 358
              |||||||||| |||||||||||||
Sbjct: 154938 agaggcatgcaaggtgaggcctct 154961


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,563,622
Number of Sequences: 3902068
Number of extensions: 4563622
Number of successful extensions: 83346
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83275
Number of HSP's gapped (non-prelim): 63
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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