ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471230.1| Oryza sativa (japonica cultivar-group), predic... 408 e-111
2dbj|AK066843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
3emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4,... 168 1e-38
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
5gb|AF498268.1| Haynaldia villosa clone kong28 mRNA 74 5e-10
6gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA 62 2e-06
7gb|AY112171.1| Zea mays CL11049_1 mRNA sequence 58 3e-05
8gb|AC026117.15| Homo sapiens 3 BAC RP11-445J14 (Roswell Park Can... 44 0.48
9gb|AC139764.5| Homo sapiens 3 BAC RP11-125N10 (Roswell Park Canc... 44 0.48
10emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 42 1.9
11emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
12gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.9
13dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 42 1.9
14dbj|AK106016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
15emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.9
16emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.9
17gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.9
18gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, co... 40 7.5
19gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.5
20gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 7.5
21gb|AC147136.2| Pan troglodytes BAC clone CH251-334C1 from Y, com... 40 7.5
22ref|XM_742360.1| Aspergillus fumigatus Af293 porphyromonas-type ... 40 7.5
23emb|BX470155.5| Human DNA sequence from clone RP4-701G14 on chro... 40 7.5
24emb|BX470201.4| Human DNA sequence from clone RP11-32H11 on chro... 40 7.5
25emb|AL627424.8| Human DNA sequence from clone RP11-529I10 on chr... 40 7.5
26gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 7.5
27emb|AL353899.22| Human DNA sequence from clone RP11-217A12 on ch... 40 7.5
28emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 7.5
29emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 7.5
30emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.5
31emb|AJ238888.1|GOX238888 Gluconobacter oxydans ribF gene and ORF... 40 7.5
32dbj|BS000634.2| Pan troglodytes chromosome Y clone: PTB-592K24, ... 40 7.5
33dbj|BS000575.1| Pan troglodytes chromosome Y clone:PTB-031L12, c... 40 7.5
34gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.5
35gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.5
36gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 ... 40 7.5
37ref|NG_000880.1| Homo sapiens arylsulfatase E pseudogene (ARSEP)... 40 7.5
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
39gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosom... 40 7.5
40dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
41gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell ... 40 7.5
42dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.5
43gb|AC002992.1|AC002992 Homo sapiens chromosome Y, clone 203M13, ... 40 7.5
44gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 7.5
45emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 7.5
46gb|AC174075.1| Homo sapiens chromosome 10 clone WI2-3242N3, comp... 40 7.5 
>ref|XM_471230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 663

 Score =  408 bits (206), Expect = e-111
 Identities = 395/458 (86%)
 Strand = Plus / Plus

                                                                       
Query: 30  tccggcgagtggcccggcaacttctccctcgccagctacgacgacctccgccagtacctc 89
           |||||||||||||| |  ||||||||||||  |||||||| ||||||||||   ||||||
Sbjct: 199 tccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacctc 258

                                                                       
Query: 90  gagtcccagatcgtctccaccgacaagatgagccccacggcgaagctcggggaggtgatg 149
           ||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 259 gagtcgcagatcgtcaccaccgaccagatgagcccgacggcgaagctcggggaggtcatg 318

                                                                       
Query: 150 tcgcgcccggtggaggtggccacgccggaccagaagctggccgagatcgacgccctcttc 209
           ||||| |  ||| ||||||||| | ||||||||| |||||| || ||||||||| |||||
Sbjct: 319 tcgcggctcgtgcaggtggccatggcggaccagaggctggcggacatcgacgccttcttc 378

                                                                       
Query: 210 gccacccagtccggcctgcccgtcgtcgacggcgagggcaggtgcatcggggtcgtctcc 269
           ||| | |||||||||||||| ||  ||||||  ||||| ||||||||||| ||| |||||
Sbjct: 379 gccgcgcagtccggcctgccggtgctcgacgaggaggggaggtgcatcggcgtcatctcc 438

                                                                       
Query: 270 aagaaggataaggccagagcatccaatgggttggactcaaccattggagaagtcatgtcc 329
           |||||||| |||||||  |||||||||||||||||||||||  |||||||||||||||| 
Sbjct: 439 aagaaggacaaggccaaggcatccaatgggttggactcaactgttggagaagtcatgtca 498

                                                                       
Query: 330 tctcctgctgtaactctgactctggagaagactgttttggaagctgctgcactaatgctg 389
           ||||||||| |||||||||| |  ||||||||||| |||||||||||||| || ||||| 
Sbjct: 499 tctcctgctataactctgacacccgagaagactgtattggaagctgctgctcttatgctc 558

                                                                       
Query: 390 aagcacaaagttcacaggataccagttgtgaatgaacaacagcaagtcattggtatcgtc 449
           ||| | || ||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct: 559 aaggagaaggttcacaggataccagtcgtgaatgaacaacagcaagtgatcgggatcgtc 618

                                                 
Query: 450 acccggacagatgtgttccaggccctggaggccagcaa 487
           || || || || || ||| ||||  |||||||||||||
Sbjct: 619 actcgcacggacgtattcaaggctttggaggccagcaa 656
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>dbj|AK066843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082B01, full
           insert sequence
          Length = 964

 Score =  408 bits (206), Expect = e-111
 Identities = 395/458 (86%)
 Strand = Plus / Plus

                                                                       
Query: 30  tccggcgagtggcccggcaacttctccctcgccagctacgacgacctccgccagtacctc 89
           |||||||||||||| |  ||||||||||||  |||||||| ||||||||||   ||||||
Sbjct: 289 tccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacctc 348

                                                                       
Query: 90  gagtcccagatcgtctccaccgacaagatgagccccacggcgaagctcggggaggtgatg 149
           ||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 349 gagtcgcagatcgtcaccaccgaccagatgagcccgacggcgaagctcggggaggtcatg 408

                                                                       
Query: 150 tcgcgcccggtggaggtggccacgccggaccagaagctggccgagatcgacgccctcttc 209
           ||||| |  ||| ||||||||| | ||||||||| |||||| || ||||||||| |||||
Sbjct: 409 tcgcggctcgtgcaggtggccatggcggaccagaggctggcggacatcgacgccttcttc 468

                                                                       
Query: 210 gccacccagtccggcctgcccgtcgtcgacggcgagggcaggtgcatcggggtcgtctcc 269
           ||| | |||||||||||||| ||  ||||||  ||||| ||||||||||| ||| |||||
Sbjct: 469 gccgcgcagtccggcctgccggtgctcgacgaggaggggaggtgcatcggcgtcatctcc 528

                                                                       
Query: 270 aagaaggataaggccagagcatccaatgggttggactcaaccattggagaagtcatgtcc 329
           |||||||| |||||||  |||||||||||||||||||||||  |||||||||||||||| 
Sbjct: 529 aagaaggacaaggccaaggcatccaatgggttggactcaactgttggagaagtcatgtca 588

                                                                       
Query: 330 tctcctgctgtaactctgactctggagaagactgttttggaagctgctgcactaatgctg 389
           ||||||||| |||||||||| |  ||||||||||| |||||||||||||| || ||||| 
Sbjct: 589 tctcctgctataactctgacacccgagaagactgtattggaagctgctgctcttatgctc 648

                                                                       
Query: 390 aagcacaaagttcacaggataccagttgtgaatgaacaacagcaagtcattggtatcgtc 449
           ||| | || ||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct: 649 aaggagaaggttcacaggataccagtcgtgaatgaacaacagcaagtgatcgggatcgtc 708

                                                 
Query: 450 acccggacagatgtgttccaggccctggaggccagcaa 487
           || || || || || ||| ||||  |||||||||||||
Sbjct: 709 actcgcacggacgtattcaaggctttggaggccagcaa 746
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>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20,
             complete sequence
          Length = 138572

 Score =  168 bits (85), Expect = 1e-38
 Identities = 160/185 (86%)
 Strand = Plus / Minus

                                                                         
Query: 115   agatgagccccacggcgaagctcggggaggtgatgtcgcgcccggtggaggtggccacgc 174
             |||||||||| |||||||||||||||||||| |||||||| |  ||| ||||||||| | 
Sbjct: 32078 agatgagcccgacggcgaagctcggggaggtcatgtcgcggctcgtgcaggtggccatgg 32019

                                                                         
Query: 175   cggaccagaagctggccgagatcgacgccctcttcgccacccagtccggcctgcccgtcg 234
             ||||||||| |||||| || ||||||||| |||||||| | |||||||||||||| ||  
Sbjct: 32018 cggaccagaggctggcggacatcgacgccttcttcgccgcgcagtccggcctgccggtgc 31959

                                                                         
Query: 235   tcgacggcgagggcaggtgcatcggggtcgtctccaagaaggataaggccagagcatcca 294
             ||||||  ||||| ||||||||||| ||| ||||||||||||| |||||||  |||||||
Sbjct: 31958 tcgacgaggaggggaggtgcatcggcgtcatctccaagaaggacaaggccaaggcatcca 31899

                  
Query: 295   atggg 299
             |||||
Sbjct: 31898 atggg 31894



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                         
Query: 30    tccggcgagtggcccggcaacttctccctcgccagctacgacgacctccgccagtacctc 89
             |||||||||||||| |  ||||||||||||  |||||||| ||||||||||   ||||||
Sbjct: 32242 tccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacctc 32183

                                     
Query: 90    gagtcccagatcgtctccaccgac 113
             ||||| ||||||||| ||||||||
Sbjct: 32182 gagtcgcagatcgtcaccaccgac 32159



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 369   gaagctgctgcactaatgctgaagcacaaagttcacaggataccagttgtgaatgaacaa 428
             ||||||||||| || ||||| ||| | || ||||||||||||||||| ||||||||||||
Sbjct: 30840 gaagctgctgctcttatgctcaaggagaaggttcacaggataccagtcgtgaatgaacaa 30781

                     
Query: 429   cagcaagt 436
             ||||||||
Sbjct: 30780 cagcaagt 30773



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 299   gttggactcaaccattggagaagtcatgtcctctcctgctgtaactctgactctggagaa 358
             ||||||||||||  |||||||||||||||| ||||||||| |||||||||| |  |||||
Sbjct: 31013 gttggactcaactgttggagaagtcatgtcatctcctgctataactctgacacccgagaa 30954

                        
Query: 359   gactgttttgg 369
             |||||| ||||
Sbjct: 30953 gactgtattgg 30943
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  168 bits (85), Expect = 1e-38
 Identities = 160/185 (86%)
 Strand = Plus / Minus

                                                                           
Query: 115     agatgagccccacggcgaagctcggggaggtgatgtcgcgcccggtggaggtggccacgc 174
               |||||||||| |||||||||||||||||||| |||||||| |  ||| ||||||||| | 
Sbjct: 2416176 agatgagcccgacggcgaagctcggggaggtcatgtcgcggctcgtgcaggtggccatgg 2416117

                                                                           
Query: 175     cggaccagaagctggccgagatcgacgccctcttcgccacccagtccggcctgcccgtcg 234
               ||||||||| |||||| || ||||||||| |||||||| | |||||||||||||| ||  
Sbjct: 2416116 cggaccagaggctggcggacatcgacgccttcttcgccgcgcagtccggcctgccggtgc 2416057

                                                                           
Query: 235     tcgacggcgagggcaggtgcatcggggtcgtctccaagaaggataaggccagagcatcca 294
               ||||||  ||||| ||||||||||| ||| ||||||||||||| |||||||  |||||||
Sbjct: 2416056 tcgacgaggaggggaggtgcatcggcgtcatctccaagaaggacaaggccaaggcatcca 2415997

                    
Query: 295     atggg 299
               |||||
Sbjct: 2415996 atggg 2415992



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                           
Query: 30      tccggcgagtggcccggcaacttctccctcgccagctacgacgacctccgccagtacctc 89
               |||||||||||||| |  ||||||||||||  |||||||| ||||||||||   ||||||
Sbjct: 2416340 tccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacctc 2416281

                                       
Query: 90      gagtcccagatcgtctccaccgac 113
               ||||| ||||||||| ||||||||
Sbjct: 2416280 gagtcgcagatcgtcaccaccgac 2416257



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                           
Query: 369     gaagctgctgcactaatgctgaagcacaaagttcacaggataccagttgtgaatgaacaa 428
               ||||||||||| || ||||| ||| | || ||||||||||||||||| ||||||||||||
Sbjct: 2414938 gaagctgctgctcttatgctcaaggagaaggttcacaggataccagtcgtgaatgaacaa 2414879

                       
Query: 429     cagcaagt 436
               ||||||||
Sbjct: 2414878 cagcaagt 2414871



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                           
Query: 299     gttggactcaaccattggagaagtcatgtcctctcctgctgtaactctgactctggagaa 358
               ||||||||||||  |||||||||||||||| ||||||||| |||||||||| |  |||||
Sbjct: 2415111 gttggactcaactgttggagaagtcatgtcatctcctgctataactctgacacccgagaa 2415052

                          
Query: 359     gactgttttgg 369
               |||||| ||||
Sbjct: 2415051 gactgtattgg 2415041



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 239      cggcgagggcaggtgcatcgg 259
                |||||||||||||||||||||
Sbjct: 24314869 cggcgagggcaggtgcatcgg 24314849
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>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA
          Length = 1474

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                       
Query: 30  tccggcgagtggcccggcaacttctccctcgccagctacgacgacctccgccagtacctc 89
           ||||||||||||||||  ||||||||||||  |||||||||||||||||||   ||||||
Sbjct: 699 tccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcctacctc 640

                    
Query: 90  gagtcccag 98
            ||||||||
Sbjct: 639 cagtcccag 631
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>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA
          Length = 1061

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 30  tccggcgagtggcccggcaacttctccctcgccagctacgacgacctccgc 80
           ||||| ||||||||||  ||||||||||||  |||||||||||||||||||
Sbjct: 209 tccggggagtggcccgagaacttctccctcctcagctacgacgacctccgc 259
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>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence
          Length = 803

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 38  gtggcccggcaacttctccctcgccagctacgacgacctccgccagtacctcgagtc 94
           ||||||||| |||| |||||||  |||||||||||||||||||   |||||||||||
Sbjct: 129 gtggcccgggaactgctccctcctcagctacgacgacctccgcgcctacctcgagtc 185
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>gb|AC026117.15| Homo sapiens 3 BAC RP11-445J14 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 8683

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 470  ggccctggaggccagcaaagca 491
            ||||||||||||||||||||||
Sbjct: 7711 ggccctggaggccagcaaagca 7732
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>gb|AC139764.5| Homo sapiens 3 BAC RP11-125N10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 50217

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 470  ggccctggaggccagcaaagca 491
            ||||||||||||||||||||||
Sbjct: 1032 ggccctggaggccagcaaagca 1053
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 220    ccggcctgcccgtcgtcgacggcga 244
              |||||||||||||||||| ||||||
Sbjct: 190812 ccggcctgcccgtcgtcgccggcga 190788
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>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30,
             complete sequence
          Length = 141128

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   cggcgagggcaggtgcatcgg 259
             |||||||||||||||||||||
Sbjct: 31280 cggcgagggcaggtgcatcgg 31260
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 189     gccgagatcgacgccctcttc 209
               |||||||||||||||||||||
Sbjct: 4712000 gccgagatcgacgccctcttc 4711980
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 486     aaagcataagaagatcctgca 506
               |||||||||||||||||||||
Sbjct: 4007986 aaagcataagaagatcctgca 4007966
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>dbj|AK106016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B07, full
           insert sequence
          Length = 1565

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 239 cggcgagggcaggtgcatcgg 259
           |||||||||||||||||||||
Sbjct: 24  cggcgagggcaggtgcatcgg 4
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 467     ccaggccctggaggccagcaa 487
               |||||||||||||||||||||
Sbjct: 2404272 ccaggccctggaggccagcaa 2404252
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>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete
             sequence
          Length = 61795

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   cggcgagggcaggtgcatcgg 259
             |||||||||||||||||||||
Sbjct: 56651 cggcgagggcaggtgcatcgg 56631
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 467     ccaggccctggaggccagcaa 487
               |||||||||||||||||||||
Sbjct: 3878066 ccaggccctggaggccagcaa 3878086
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>gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, complete sequence
          Length = 201694

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    gccagtacctcgagtcccag 98
             ||||||||||||||||||||
Sbjct: 82498 gccagtacctcgagtcccag 82479
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     ctgcccgtcgtcgacggcga 244
               ||||||||||||||||||||
Sbjct: 1479974 ctgcccgtcgtcgacggcga 1479955



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cgtcgtcgacggcgagggca 249
             ||||||||||||||||||||
Sbjct: 85246 cgtcgtcgacggcgagggca 85265
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    gccgagatcgacgccctcttcgcc 212
              ||||||||||||||| ||||||||
Sbjct: 583717 gccgagatcgacgccttcttcgcc 583740
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>gb|AC147136.2| Pan troglodytes BAC clone CH251-334C1 from Y, complete sequence
          Length = 161852

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    tccaagaaggataaggccag 286
              ||||||||||||||||||||
Sbjct: 132401 tccaagaaggataaggccag 132382
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>ref|XM_742360.1| Aspergillus fumigatus Af293 porphyromonas-type peptidyl-arginine
           deiminase superfamily (Afu8g06520) partial mRNA
          Length = 1137

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 cgtcgtcgacggcgagggca 249
           ||||||||||||||||||||
Sbjct: 552 cgtcgtcgacggcgagggca 571
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>emb|BX470155.5| Human DNA sequence from clone RP4-701G14 on chromosome 10 Contains
            part of the DOCK1 gene for dedicator of cyto-kinesis 1,
            complete sequence
          Length = 3225

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   caacttctccctcgccagct 66
            ||||||||||||||||||||
Sbjct: 1882 caacttctccctcgccagct 1863
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>emb|BX470201.4| Human DNA sequence from clone RP11-32H11 on chromosome 10 Contains
           part of the DOCK1 gene for dedicator of cyto-kinesis 1,
           complete sequence
          Length = 12201

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  caacttctccctcgccagct 66
           ||||||||||||||||||||
Sbjct: 657 caacttctccctcgccagct 638
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>emb|AL627424.8| Human DNA sequence from clone RP11-529I10 on chromosome 10 Contains the
             3' end of the BTRC gene for beta-transducin repeat
             containing, the POLL gene for polymerase (DNA directed)
             lambda, a novel gene (DKFZP566F084), the 3' end of the
             SHFM3 gene for split hand/foot malformation (ectrodactyly)
             type 3 and three CpG islands, complete sequence
          Length = 108503

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   ccaggccctggaggccagca 486
             ||||||||||||||||||||
Sbjct: 84212 ccaggccctggaggccagca 84231
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     cggcctgcccgtcgtcgacggcga 244
               ||||||||||||||| ||||||||
Sbjct: 1349827 cggcctgcccgtcgttgacggcga 1349804
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>emb|AL353899.22| Human DNA sequence from clone RP11-217A12 on chromosome 1 Contains the 3'
              end of the gene for immunoglobulin superfamily receptor
              translocation associated 2 (IRTA2), complete sequence
          Length = 135733

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    gactctggagaagactgttt 366
              ||||||||||||||||||||
Sbjct: 101651 gactctggagaagactgttt 101670
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 486     aaagcataagaagatcctgc 505
               ||||||||||||||||||||
Sbjct: 3911749 aaagcataagaagatcctgc 3911730
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 189     gccgagatcgacgccctcttcgcc 212
               ||||||||||||||||| ||||||
Sbjct: 4056787 gccgagatcgacgcccttttcgcc 4056810
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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     cgacctccgccagtacctcg 90
              ||||||||||||||||||||
Sbjct: 162239 cgacctccgccagtacctcg 162220
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>emb|AJ238888.1|GOX238888 Gluconobacter oxydans ribF gene and ORF1 and ORF2
          Length = 2892

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 211  ccacccagtccggcctgcccgtcg 234
            ||||||||| ||||||||||||||
Sbjct: 1252 ccacccagttcggcctgcccgtcg 1275
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>dbj|BS000634.2| Pan troglodytes chromosome Y clone: PTB-592K24, complete sequence
          Length = 170276

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tccaagaaggataaggccag 286
             ||||||||||||||||||||
Sbjct: 57714 tccaagaaggataaggccag 57695
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>dbj|BS000575.1| Pan troglodytes chromosome Y clone:PTB-031L12, complete sequences
          Length = 158061

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  tccaagaaggataaggccag 286
            ||||||||||||||||||||
Sbjct: 6600 tccaagaaggataaggccag 6619
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 267      tccaagaaggataaggccag 286
                ||||||||||||||||||||
Sbjct: 17439287 tccaagaaggataaggccag 17439306
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 221    cggcctgcccgtcgtcgacggcgagggc 248
              ||||||||||||||||||| || |||||
Sbjct: 731560 cggcctgcccgtcgtcgaccgcaagggc 731533
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>gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 In GNAZ-BCR Region,
             complete sequence
          Length = 142979

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   ccaggccctggaggccagca 486
             ||||||||||||||||||||
Sbjct: 98691 ccaggccctggaggccagca 98710
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>ref|NG_000880.1| Homo sapiens arylsulfatase E pseudogene (ARSEP) on chromosome Y
          Length = 15462

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  tccaagaaggataaggccag 286
            ||||||||||||||||||||
Sbjct: 5388 tccaagaaggataaggccag 5407
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 115      agatgagccccacggcgaagctcgggga 142
                |||||||||| ||||||||||| |||||
Sbjct: 19689814 agatgagcccaacggcgaagcttgggga 19689841
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>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete
             sequence
          Length = 206481

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   gtgttccaggccctggaggc 481
             ||||||||||||||||||||
Sbjct: 78050 gtgttccaggccctggaggc 78031
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>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1166B08
          Length = 147667

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 115   agatgagccccacggcgaagctcgggga 142
             |||||||||| ||||||||||| |||||
Sbjct: 38436 agatgagcccaacggcgaagcttgggga 38463
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>gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 131070

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tccaagaaggataaggccag 286
             ||||||||||||||||||||
Sbjct: 63458 tccaagaaggataaggccag 63439
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     ccggcctgcccgtcgtcgac 239
               ||||||||||||||||||||
Sbjct: 1014253 ccggcctgcccgtcgtcgac 1014234



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cgtcgtcgacggcgagggca 249
              ||||||||||||||||||||
Sbjct: 642223 cgtcgtcgacggcgagggca 642204
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>gb|AC002992.1|AC002992 Homo sapiens chromosome Y, clone 203M13, complete sequence
          Length = 154848

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tccaagaaggataaggccag 286
             ||||||||||||||||||||
Sbjct: 34255 tccaagaaggataaggccag 34274
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 211     ccacccagtccggcctgcccgtcg 234
               ||||||||| ||||||||||||||
Sbjct: 1353438 ccacccagttcggcctgcccgtcg 1353461
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 227     gcccgtcgtcgacggcgagg 246
               ||||||||||||||||||||
Sbjct: 1789030 gcccgtcgtcgacggcgagg 1789011
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>gb|AC174075.1| Homo sapiens chromosome 10 clone WI2-3242N3, complete sequence
          Length = 40411

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    caacttctccctcgccagct 66
             ||||||||||||||||||||
Sbjct: 29580 caacttctccctcgccagct 29599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,093,920
Number of Sequences: 3902068
Number of extensions: 4093920
Number of successful extensions: 77948
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76974
Number of HSP's gapped (non-prelim): 974
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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