>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 203 GRSAQGSSER*GSRLPRSIRGSLGAAAAVSCGRLPVP-GRDDGTATLLSPP 54
           GRS QGS    G RL  +++G+L A  A+  GR P P GR    A+   PP
Sbjct: 95  GRSRQGSVPDYGQRLKANLKGTLQAGPAL--GRRPWPLGRASSKASTPKPP 143

>CF015_MACMU (Q9BGL9) Protein C6orf15 homolog precursor (rmSTG)|
          Length = 314

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 194 AQGSSER*GSRLPRSIRGSLGAAAAVSCGRLPVPGRDDGTATLLSPPQPH 45
           A  +++R G  LP  +   L +AAA++ G  P+PG     AT LSP   H
Sbjct: 120 AAAAADRLGEALPEEL-SYLSSAAALAPGSGPLPGESSPDATDLSPEASH 168

>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 24/79 (30%), Positives = 32/79 (40%)
 Frame = -3

Query: 247 GTDRDSRRRSELEKKAAARRGAPSGEGVGFQGRSAAVLVLPLPSXXXXXXXXXXXXXRPP 68
           G D  S  RS  +    A+RG+P G  VG  G    V    + S              PP
Sbjct: 353 GHDHYSGYRSS-QSPPIAQRGSPGGMPVGPDGYHQPVSAATMASPLTAMSSTGTPAVTPP 411

Query: 67  SSRRLNHIDRRPPSPTCPA 11
           SS  +++     PSP+ PA
Sbjct: 412 SS-AVSYTSGHSPSPSAPA 429

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/50 (42%), Positives = 22/50 (44%)
 Frame = +3

Query: 3   RVGAGQVGDGGRRSMWLRRREEGGRAVVASWDWEAAARDGSGSTKTAADR 152
           R G G  G GGRR    RRR EG  A  A  + E    DG G      DR
Sbjct: 307 RRGGGPPGRGGRRRGGKRRRAEGTEAAAADAEEE---EDGDGDEDEDEDR 353

>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)|
          Length = 479

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 23/65 (35%), Positives = 27/65 (41%)
 Frame = +1

Query: 121 AAAAPRLPRIDLGSRLPHRSELPCALRPSSPARNAVCYLCLSQALN*RDPTLEQQPAAEY 300
           AAAA +   + LG     R   P   RPS+ A  A  Y  L   L  R       PA  Y
Sbjct: 57  AAAASQTRGLQLGPAAAGRLAGPIPARPSAAAAAAASYSALRAPLFPRSLAAAAGPARGY 116

Query: 301 SQNNK 315
           SQ +K
Sbjct: 117 SQESK 121

>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 67  RVAVPSSRPGTGRRPHETAAAAPRLPRID 153
           R  V   R G   RP   AAAAP LPR+D
Sbjct: 21  RAVVHEPREGPEPRPEGAAAAAPTLPRVD 49

>YI32_AGRT7 (P05679) Insertion element IS136 hypothetical 21.2 kDa protein|
          Length = 194

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -2

Query: 227 TAFRAGEEGRSAQGSSER*GSRLPRSIRGSLGAAAAVSCGRLPVPGRDDGTATLLSPPQP 48
           TAF A     +   +     S L + +RG     ++      P PGRD   ++L +  QP
Sbjct: 38  TAFIANRPSATRSAAISVFLSPLWKGLRGGFRPPSSCDRACAPTPGRDPPVSSLPNSRQP 97

Query: 47  HRSTAAVTHLSGSNA 3
            R    + HL  S A
Sbjct: 98  ARQNPRLQHLPRSRA 112

>JPH3_MOUSE (Q9ET77) Junctophilin-3 (Junctophilin type 3) (JP-3)|
          Length = 744

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 270 YTRAAASSGVQPEQQALKGFPCCSTSSRAPPSNTHNSRLKHTTNQDDQSEEKA 428
           Y +    S + P+   L+ FP   TS+  PP+    +++ H + Q    EE++
Sbjct: 461 YRKGTTPSDLTPDDSPLQSFPASPTST-PPPAPASRTKMAHFSRQVSVDEERS 512

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 43   RCG*GGERRVAVPSSRPGTGRRPHETAAAAPRLPRIDLGSRLPHRSELPCALR 201
            R    G RR   P++ P  G RP     ++ R PR++     P RSE P A R
Sbjct: 2331 RAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSPRMERRVPGPARSESPRACR 2383

>VGLB_PRVIF (P08355) Glycoprotein GII precursor|
          Length = 913

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/66 (37%), Positives = 29/66 (43%)
 Frame = +1

Query: 31  AAVDRCG*GGERRVAVPSSRPGTGRRPHETAAAAPRLPRIDLGSRLPHRSELPCALRPSS 210
           AA   CG     R A  S  PGTG  P++ +A A  L  I+  S  P  SE P       
Sbjct: 51  AAAPPCGAAAVTRAASASPTPGTGATPNDVSAEA-SLEEIEAFS--PGPSEAPDGEYGDL 107

Query: 211 PARNAV 228
            AR AV
Sbjct: 108 DARTAV 113

>CF015_HUMAN (Q6UXA7) Protein C6orf15 precursor (STG protein)|
          Length = 325

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 194 AQGSSER*GSRLPRSIRGSLGAAAAVSCGRLPVPGRDDGTATLLSP 57
           A  + +R G  LP  +   L +AAA++ G  P+PG     AT LSP
Sbjct: 120 AAAAEDRLGEALPEEL-SYLSSAAALAPGSGPLPGESSPDATGLSP 164

>YXEE_BACSU (P54944) Hypothetical protein yxeE|
          Length = 121

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
 Frame = +1

Query: 262 RDPTLEQQPAAEYSQN-----------NKH*RDSHAAQQVAEPPHQIPTTVDLNTPQIRT 408
           R P LE++ AA   QN           N+  R +    ++AE  +Q+   V+ +T ++  
Sbjct: 39  RQPALERRIAALERQNEQQSRELTRLTNEDRRQNREIARIAEQVNQLSQAVERHTRRLNR 98

Query: 409 INPRKRPYRNSVSFQVTS 462
           +N R R   N ++   T+
Sbjct: 99  LNQRLRTVENRLNIPFTA 116

>TBPB_NEIMA (O68937) Transferrin-binding protein 2 precursor (TBP-2)|
          Length = 698

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 299 YSAAGCCSSVGSLQFRAWDRQR*QTAFRAGEEGRSAQGSSER*GSRL 159
           Y    CCS++  L++    R+  ++A +AGE    A   +E+ G  +
Sbjct: 485 YEVEVCCSNLNYLKYGMLTRKNSKSAMQAGESSSQADAKTEQVGQSM 531

>OLIG3_MOUSE (Q6PFG8) Oligodendrocyte transcription factor 3 (Oligo3)|
           (Oligodendrocyte-specific bHLH transcription factor 3)
           (Basic helix-loop-helix domain-containing class B
           protein 7)
          Length = 273

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 94  GTGRRPHETAAAAPRLPRIDLGSRLPHRSELPC 192
           GT R PH    A    P + LGS   H + LPC
Sbjct: 208 GTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPC 240

>LEXA1_GEOSL (P61608) LexA repressor 1 (EC 3.4.21.88)|
          Length = 201

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 247 GTDRDSRRRSELEKKAAARRGAPSGEGVGFQGRSAAVLVLPL 122
           GT   S+    LE+K   RR A S  G+   GR+   L LP+
Sbjct: 39  GTLGVSKHLEALERKGYLRREANSSRGIALVGRTDTALSLPV 80

>RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 416

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 252 GLGQTEIADGVPSWRRRPQRAGELRAVRESASKVDPRQS 136
           GLG   +  GV  W RR QR G+ R V E+  + +  ++
Sbjct: 360 GLGTVALLIGVIVWHRRRQRKGQERKVPENQEEEEEERA 398

>ERYA3_SACER (Q03133) Erythronolide synthase, modules 5 and 6 (EC 2.3.1.94) (ORF|
           3) (6-deoxyerythronolide B synthase III) (DEBS 3)
          Length = 3171

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 99  WEAAARDGSGSTKTAADRPWKPTP-SPLGAPLRAAAFF 209
           WE  +  G    +  ADR W+P P + LG  L AA  F
Sbjct: 60  WEFVSGGGDAIAEAPADRGWEPDPDARLGGMLAAAGDF 97

>OLIG3_HUMAN (Q7RTU3) Oligodendrocyte transcription factor 3 (Oligo3) (Basic|
           helix-loop-helix domain-containing class B protein 7)
          Length = 272

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 94  GTGRRPHETAAAAPRLPRIDLGSRLPHRSELPC 192
           GT R PH    A    P + LGS   H + LPC
Sbjct: 207 GTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPC 239

>ENV_MLVRK (P31794) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP76; Spike protein p15E; R protein]
          Length = 665

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 61  ERRVAVPSSRPGTGRRPHETAAAAPRLPRIDLGSRLPHRSELPC-ALRPSSPARNAVCYL 237
           +R  + P S P +   P ET    P  P   + +RL +  +    AL  +SP R   C+L
Sbjct: 277 QRPPSQPRSPPHSNSTPTETPLTLPEPPPAGVENRLLNLVKGAYQALNLTSPDRTQECWL 336

Query: 238 CL 243
           CL
Sbjct: 337 CL 338

>ENV_MLVRD (P11268) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP76; Spike protein p15E; R protein]
          Length = 665

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 61  ERRVAVPSSRPGTGRRPHETAAAAPRLPRIDLGSRLPHRSELPC-ALRPSSPARNAVCYL 237
           +R  + P S P +   P ET    P  P   + +RL +  +    AL  +SP R   C+L
Sbjct: 277 QRPPSQPRSPPHSNSTPTETPLTLPEPPPAGVENRLLNLVKGAYQALNLTSPDRTQECWL 336

Query: 238 CL 243
           CL
Sbjct: 337 CL 338

>LAGE3_HUMAN (Q14657) L antigen family member 3 (ITBA2 protein) (ESO-3 protein)|
          Length = 143

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 209 EEGRSAQGSSER*GSRLPRSIRGSLGAAAAVSCGRLPV----PGRDDGTATLLSPPQPHR 42
           + G  A G   R G     S RG +  AAA + G  P     PGRD  +A   S  +PH 
Sbjct: 7   DAGGGADGGDGRGG----HSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHI 62

Query: 41  STAAV 27
            T +V
Sbjct: 63  FTLSV 67

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 25/102 (24%), Positives = 30/102 (29%), Gaps = 3/102 (2%)
 Frame = +3

Query: 9   GAGQVGDGGRRSMWLRRREEGGRAVVASWDWEAAARDGSG---STKTAADRPWKPTPSPL 179
           G G  GDGG       RR   G         E A R G G   S+ + +D    P  SP 
Sbjct: 315 GLGLAGDGGAPPQRQPRRRRAG---------EGALRRGRGFSSSSSSGSDSDLSPARSPS 365

Query: 180 GAPLRAAAFFXXXXXXXXXXXXXXXXXKRPYTRAAASSGVQP 305
                AAA                       +      GV+P
Sbjct: 366 APRAPAAAARRSASSSSSSSSSSSSSSSSSSSEGEEDEGVRP 407

>GLU2B_MOUSE (O08795) Glucosidase 2 beta subunit precursor (Glucosidase II beta|
           subunit) (Protein kinase C substrate, 60.1 kDa protein,
           heavy chain) (PKCSH) (80K-H protein)
          Length = 521

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 170 LTARSSPARCGLLLQLGTPSAISVCPKP 253
           +T+ + P+RC  L++L TP+A   CP+P
Sbjct: 484 VTSTTEPSRCEYLMELMTPAA---CPEP 508

>Y1954_ARCFU (O28325) Putative amidase AF1954 (EC 3.5.1.4)|
          Length = 453

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 161 LPRSIRGSLG-AAAAVSCGRLPVPGRDDGTATLLSP 57
           L R++ GS G +AAAV+ G LPV   +DG  ++  P
Sbjct: 135 LSRTVGGSSGGSAAAVAAGILPVASGNDGGGSIRIP 170

>MINP1_MOUSE (Q9Z2L6) Multiple inositol polyphosphate phosphatase 1 precursor|
           (EC 3.1.3.62) (Inositol (1,3,4,5)-tetrakiphosphate
           3-phosphatase) (Ins(1,3,4,5)P(4) 3-phosphatase)
          Length = 481

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 167 SRLPRSIRGSLGAAAAV--SCGRLPVPGRDDGTATLLSP 57
           S LP S+  +   AAA+  S  R  +PGR D  A++LSP
Sbjct: 7   SHLPASVAPAAVLAAALLSSFARCSLPGRGDPVASVLSP 45

>GLU2B_BOVIN (Q28034) Glucosidase 2 beta subunit precursor (Glucosidase II beta|
           subunit) (Protein kinase C substrate, 60.1 kDa protein,
           heavy chain) (PKCSH) (80K-H protein) (Vacuolar
           system-associated protein 60) (VASAP-60)
          Length = 533

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 170 LTARSSPARCGLLLQLGTPSAISVCPKP 253
           +T+ + P+RC  L++L TP+A   CP+P
Sbjct: 496 VTSTTEPSRCEYLMELMTPAA---CPEP 520

>GLU2B_HUMAN (P14314) Glucosidase 2 beta subunit precursor (Glucosidase II beta|
           subunit) (Protein kinase C substrate, 60.1 kDa protein,
           heavy chain) (PKCSH) (80K-H protein)
          Length = 527

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 170 LTARSSPARCGLLLQLGTPSAISVCPKP 253
           +T+ + P+RC  L++L TP+A   CP+P
Sbjct: 490 VTSTTEPSRCEYLMELMTPAA---CPEP 514

>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3)
          Length = 618

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +1

Query: 133 PRLPRIDLGSRLPHRSELPCALRPSSPARNAVCYLCLSQALN*RDPTLEQQPAA 294
           P  PR    +RLP R      L+P      A     L  AL+ R P   +QP A
Sbjct: 43  PGAPRSPCSARLPCRLFFRVCLKPGLSEEAAESPCALGAALSARGPVYTEQPGA 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,439,046
Number of Sequences: 219361
Number of extensions: 1374747
Number of successful extensions: 5768
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5763
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)