ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal16o13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1REG2_DROME (Q94915) Rhythmically expressed gene 2 protein (dREG-2) 38 0.019
2GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (P... 37 0.025
3GPH_PASMU (Q9CKJ5) Phosphoglycolate phosphatase (EC 3.1.3.18) (P... 37 0.033
4GPH_HAEIN (P44755) Phosphoglycolate phosphatase (EC 3.1.3.18) (P... 36 0.056
5SYI_NEIG1 (Q5FAF5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 31 1.8
6GPHC_RALEU (P40852) Phosphoglycolate phosphatase, chromosomal (E... 30 3.1
7PEBB_PROMM (Q7V585) Phycoerythrobilin:ferredoxin oxidoreductase ... 29 6.9
8HAD1_PSEUC (P24069) (S)-2-haloacid dehalogenase I (EC 3.8.1.2) (... 29 9.0

>REG2_DROME (Q94915) Rhythmically expressed gene 2 protein (dREG-2)|
          Length = 260

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
 Frame = +2

Query: 122 YRTIGEKYGVKYSEDEILMRYRQAYSQPWGKSRLRYVDDGRP---------FWQHIVSSS 274
           Y  IG  +G +   +E+   ++      W K    Y + GR          +W+ +++ +
Sbjct: 29  YGEIGALFGARCDNNELAKNFKAN----WYKMNRDYPNFGRDTNPQMEWQQWWRKLIAGT 84

Query: 275 TGCSDLQYFEELYH--------YYTTEKAWQLIDPDAKYVFEA---LRRAGVRTAVVSNF 421
              S     +E  H         Y T   WQ  +   + + +    L+    +  V++NF
Sbjct: 85  FAESGAAIPDEKLHNFSNHLIELYKTSICWQPCNGSVELLQQLRKELKPEKCKLGVIANF 144

Query: 422 DTRLRPLLQALNCDHWFDXXXXXXXXXXXKPNP 520
           D RL  LLQ    D + D           KP+P
Sbjct: 145 DPRLPTLLQNTKLDQYLDFAINSYEVQAEKPDP 177



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>GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 213

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 314 HYYTTEKAWQLIDPDAKYVFEALRRAGVRTAVVSN-FDTRLRPLLQALNCDHWFDXXXXX 490
           HY      +    P+  Y  EAL+  G + AVVSN  +   + +L  LN   +FD     
Sbjct: 71  HYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGG 130

Query: 491 XXXXXXKPNPT 523
                 KP+PT
Sbjct: 131 DTFGEKKPSPT 141



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>GPH_PASMU (Q9CKJ5) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 224

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 PDAKYVFEALRRAGVRTAVVSNFDTR-LRPLLQALNCDHWFDXXXXXXXXXXXKPNP 520
           P+ K   E L++ G   AVV+N  T+ ++P+LQA   DH F            KP+P
Sbjct: 98  PNVKSTLETLKQKGYLLAVVTNKPTKHVQPVLQAFGIDHLFSELLGGQSLPAIKPHP 154



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>GPH_HAEIN (P44755) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 224

 Score = 36.2 bits (82), Expect = 0.056
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +2

Query: 284 SDLQYFEELYHYYTTEKAWQL--IDPDAKYVFEALRRAGVRTAVVSNFDTR-LRPLLQAL 454
           ++++   E +++Y  E    +  + P+ K   E L+  G   AVV+N  TR ++P+L A 
Sbjct: 74  TEVKQVTERFNFYYGENLCNVSRLYPNVKETLEILKEKGYVLAVVTNKPTRHVQPVLAAF 133

Query: 455 NCDHWFDXXXXXXXXXXXKPNP 520
             DH F            KP+P
Sbjct: 134 GIDHLFSEMLGGQSLPAIKPHP 155



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>SYI_NEIG1 (Q5FAF5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 929

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/89 (23%), Positives = 43/89 (48%)
 Frame = +2

Query: 203 PWGKSRLRYVDDGRPFWQHIVSSSTGCSDLQYFEELYHYYTTEKAWQLIDPDAKYVFEAL 382
           PWG++RL  + +GRP W  +VS        +Y+     ++  ++  +L  P++  + E +
Sbjct: 448 PWGRARLESMIEGRPDW--VVSRQ------RYWGTPMTFFVHKETGEL-HPNSAELLEKV 498

Query: 383 RRAGVRTAVVSNFDTRLRPLLQALNCDHW 469
            +      + + F      LL A +C+H+
Sbjct: 499 AQRIEEKGIEAWFSLDKSELLSAEDCEHY 527



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>GPHC_RALEU (P40852) Phosphoglycolate phosphatase, chromosomal (EC 3.1.3.18)|
           (PGPase) (PGP)
          Length = 231

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +2

Query: 314 HYYTTEKAWQLIDPDAKYVFEALRRAGVRTAVVSNFDTRLR-PLLQALNCDHWFDXXXXX 490
           HY  T      + P  +   EALRR G R A V+N    L  PLL       + +     
Sbjct: 84  HYAETNGRLGSVFPGVEAGLEALRRQGYRLACVTNKPRALAVPLLALTGLSQYLEVLVAG 143

Query: 491 XXXXXXKPNP 520
                 KP+P
Sbjct: 144 DSIAQMKPDP 153



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>PEBB_PROMM (Q7V585) Phycoerythrobilin:ferredoxin oxidoreductase (EC 1.3.7.3)|
          Length = 257

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 256 LPKGPPVIDIPKPRFAP---WLRICLPVPHQDLILRVLHPILFAY 131
           LP+G P+ +  KP F+P   W R+ L +    LI  V+ P    Y
Sbjct: 150 LPEGGPIPEEAKPYFSPGFLWTRLPLSIEGNQLIDEVIMPAFKDY 194



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>HAD1_PSEUC (P24069) (S)-2-haloacid dehalogenase I (EC 3.8.1.2) (2-haloalkanoic|
           acid dehalogenase I) (L-2-haloacid dehalogenase I)
           (Halocarboxylic acid halidohydrolase I) (DEHCI)
          Length = 227

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 PDAKYVFEALRRAGVRTAVVSNFDTR-LRPLLQALNCDHWFDXXXXXXXXXXXKPNP 520
           PDA     AL+ AG  TA++SN +   LR  L+A N     D           KP+P
Sbjct: 98  PDAVGTLGALKAAGFTTAILSNGNNEMLRGALRAGNLTEALDQCISVDEIKIYKPDP 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,870,294
Number of Sequences: 219361
Number of extensions: 1390603
Number of successful extensions: 3617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3616
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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