ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal16o13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 915 Score = 474 bits (239), Expect = e-130 Identities = 383/431 (88%) Strand = Plus / Plus Query: 95 gcccccaccgagcccatggcccaggtgtacagaacaataggcgaaaagtatggggtgaag 154 |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || || Sbjct: 244 gcccccaccgagcccatggcgcaggtatacagaacaattggcgaaaagtatggagtcaac 303 Query: 155 tactcggaggatgagatcttgatgaggtaccggcaggcatattcgcagccatggggcaaa 214 ||||| |||||||||||||||||||| ||| || ||| ||| ||||||||||||| | | Sbjct: 304 tactcagaggatgagatcttgatgagatacaggagggcttatgcgcagccatggggtaga 363 Query: 215 tcgcggcttaggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttct 274 |||||||| |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| Sbjct: 364 tcgcggctgaggtatgtggatgatggtaggcccttctggcagcatatagttagctcttca 423 Query: 275 acaggctgctcagatttacagtacttcgaggaactttatcattactatacaactgagaag 334 || || |||||||||||||||||||| |||||||||||||| ||||||||||||| ||| Sbjct: 424 actggatgctcagatttacagtactttgaggaactttatcagtactatacaactgcaaag 483 Query: 335 gcctggcagctcattgatcccgatgctaaatacgtttttgaagcattaagaagggctggt 394 || ||||||||| || || || |||||||| |||||||||||||| |||| ||||||| Sbjct: 484 gcttggcagctctgcgaccctgacgctaaatatgtttttgaagcattgagaaaggctggt 543 Query: 395 gtgagaacagctgttgtatccaactttgacacccgcctccggccacttttacaggcactg 454 || | ||||||||||||||||||||||||||| || || ||||||||||||||||| ||| Sbjct: 544 gtaaaaacagctgttgtatccaactttgacacacgtcttcggccacttttacaggccctg 603 Query: 455 aattgtgatcactggtttgatgcggttgctgtatctgctgaggttgcagcagaaaagcca 514 ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 604 aattgtgatcactggtttgatgcagttgctgtatctgctgaggttgctgcggaaaagcca 663 Query: 515 aacccaacaat 525 ||||||||||| Sbjct: 664 aacccaacaat 674 Score = 153 bits (77), Expect = 7e-34 Identities = 95/101 (94%) Strand = Plus / Minus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgcc 60 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 252 ggtgggggcgaggagcgtcccggcggcgtcgacgaggatggccttgtgggtgatgtcgcc 193 Query: 61 gtagatggcccgccggtagtcgtagtactcccgggccccca 101 ||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 192 gtagatggccctccggtagtcgtagtactcccgcgccccca 152
>gb|DQ103591.1| Oryza sativa (japonica cultivar-group) DT-related protein (Dr1) mRNA, complete cds Length = 876 Score = 466 bits (235), Expect = e-128 Identities = 382/431 (88%) Strand = Plus / Plus Query: 95 gcccccaccgagcccatggcccaggtgtacagaacaataggcgaaaagtatggggtgaag 154 |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || || Sbjct: 139 gcccccaccgagcccatggcgcaggtatacagaacaattggcgaaaagtatggagtcaac 198 Query: 155 tactcggaggatgagatcttgatgaggtaccggcaggcatattcgcagccatggggcaaa 214 ||||| |||||||||||||||||||| ||| || ||| ||| ||||||||||||| | | Sbjct: 199 tactcagaggatgagatcttgatgagatacaggagggcttatgcgcagccatggggtaga 258 Query: 215 tcgcggcttaggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttct 274 ||||| || |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| Sbjct: 259 tcgcgtctgaggtatgtggatgatggtaggcccttctggcagcatatagttagctcttca 318 Query: 275 acaggctgctcagatttacagtacttcgaggaactttatcattactatacaactgagaag 334 || || |||||||||||||||||||| |||||||||||||| ||||||||||||| ||| Sbjct: 319 actggatgctcagatttacagtactttgaggaactttatcagtactatacaactgcaaag 378 Query: 335 gcctggcagctcattgatcccgatgctaaatacgtttttgaagcattaagaagggctggt 394 || ||||||||| || || || |||||||| |||||||||||||| |||| ||||||| Sbjct: 379 gcttggcagctctgcgaccctgacgctaaatatgtttttgaagcattgagaaaggctggt 438 Query: 395 gtgagaacagctgttgtatccaactttgacacccgcctccggccacttttacaggcactg 454 || | ||||||||||||||||||||||||||| || || ||||||||||||||||| ||| Sbjct: 439 gtaaaaacagctgttgtatccaactttgacactcgtcttcggccacttttacaggccctg 498 Query: 455 aattgtgatcactggtttgatgcggttgctgtatctgctgaggttgcagcagaaaagcca 514 ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 499 aattgtgatcactggtttgatgcagttgctgtatctgctgaggttgctgcggaaaagcca 558 Query: 515 aacccaacaat 525 ||||||||||| Sbjct: 559 aacccaacaat 569 Score = 157 bits (79), Expect = 4e-35 Identities = 100/107 (93%) Strand = Plus / Minus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgcc 60 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 147 ggtgggggcgaggagcgtcccggcggcgtcgacgaggatggccttgtgggtgatgtcgcc 88 Query: 61 gtagatggcccgccggtagtcgtagtactcccgggcccccaccgagc 107 ||||||||||| ||||||||||||||||||||| ||||||| ||||| Sbjct: 87 gtagatggccctccggtagtcgtagtactcccgcgcccccatcgagc 41
>gb|AY107813.1| Zea mays PCO123922 mRNA sequence Length = 730 Score = 244 bits (123), Expect = 2e-61 Identities = 216/247 (87%) Strand = Plus / Plus Query: 95 gcccccaccgagcccatggcccaggtgtacagaacaataggcgaaaagtatggggtgaag 154 |||||||||||||||||||| ||||||||||| || |||||| | ||||| || ||||| Sbjct: 32 gcccccaccgagcccatggcgcaggtgtacaggacgataggccagaagtacggagtgaat 91 Query: 155 tactcggaggatgagatcttgatgaggtaccggcaggcatattcgcagccatggggcaaa 214 ||||| ||||||||||| ||||| ||||||||| || ||| ||||||||||||| | Sbjct: 92 tactcagaggatgagattctgatgcggtaccggctagcttatgcgcagccatggggtcga 151 Query: 215 tcgcggcttaggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttct 274 ||||| || ||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 152 tcgcgtctgaggtatgtcgatgacggaaggcccttttggcaacatatagtgagctcatct 211 Query: 275 acaggctgctcagatttacagtacttcgaggaactttatcattactatacaactgagaag 334 || |||||||||||| ||||||||||||||||||| || || ||||| |||||||||||| Sbjct: 212 accggctgctcagatctacagtacttcgaggaactgtaccagtactacacaactgagaag 271 Query: 335 gcctggc 341 ||||||| Sbjct: 272 gcctggc 278 Score = 89.7 bits (45), Expect = 9e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 413 tccaactttgacacccgcctccggccacttttacaggcactgaattgtgatcactggttt 472 |||||||| ||||| || || ||||| ||||||||||| ||||| || || |||||| Sbjct: 350 tccaacttcgacactcgtcttcggccgcttttacaggcgctgaaatgcgacggctggttc 409 Query: 473 gatgcggttgctgtatctgctgaggttgcagcagaaaagccaaacccaacaat 525 || || |||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct: 410 gacgcagttgctgtgtctgctgaggttgcagcagaaaagccgaaccccacaat 462 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgac 33 |||||||||||| || ||||||||||||||||| Sbjct: 40 ggtgggggcgagcagcgtgccggcggcgtcgac 8
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 198 bits (100), Expect = 1e-47 Identities = 130/140 (92%) Strand = Plus / Minus Query: 359 gctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgttgtatccaac 418 |||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||| Sbjct: 27730883 gctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagctgttgtatccaac 27730824 Query: 419 tttgacacccgcctccggccacttttacaggcactgaattgtgatcactggtttgatgcg 478 |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27730823 tttgacacacgtcttcggccacttttacaggccctgaattgtgatcactggtttgatgca 27730764 Query: 479 gttgctgtatctgctgaggt 498 |||||||||||||||||||| Sbjct: 27730763 gttgctgtatctgctgaggt 27730744 Score = 153 bits (77), Expect = 7e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgcc 60 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 27732890 ggtgggggcgaggagcgtcccggcggcgtcgacgaggatggccttgtgggtgatgtcgcc 27732949 Query: 61 gtagatggcccgccggtagtcgtagtactcccgggccccca 101 ||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 27732950 gtagatggccctccggtagtcgtagtactcccgcgccccca 27732990 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 224 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 283 |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||| Sbjct: 27731103 aggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgc 27731044 Query: 284 tcagatttacagtacttcgaggaactttatcattactatacaactg 329 ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 27731043 tcagatttacagtactttgaggaactttatcagtactatacaactg 27730998 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 116 caggtgtacagaacaataggcgaaaagtatggggtgaagtactcggaggatgagatcttg 175 ||||| ||||||||||| |||||||||||||| || || ||||| ||||||||||||||| Sbjct: 27732377 caggtatacagaacaattggcgaaaagtatggagtcaactactcagaggatgagatcttg 27732318 Query: 176 atgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttaggta 228 ||||| ||| || ||| ||| ||||||||||||| | ||||||||| ||||| Sbjct: 27732317 atgagatacaggagggcttatgcgcagccatggggtagatcgcggctgaggta 27732265 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 495 aggttgcagcagaaaagccaaacccaacaat 525 ||||||| || |||||||||||||||||||| Sbjct: 27730646 aggttgctgcggaaaagccaaacccaacaat 27730616 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 95 gcccccaccgagcccatggcccaggt 120 |||||||||||||||||||| ||||| Sbjct: 27732898 gcccccaccgagcccatggcgcaggt 27732873 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 10471841 tacagtacttcgaggaactt 10471822
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 198 bits (100), Expect = 1e-47 Identities = 130/140 (92%) Strand = Plus / Minus Query: 359 gctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgttgtatccaac 418 |||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||| Sbjct: 23262 gctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagctgttgtatccaac 23203 Query: 419 tttgacacccgcctccggccacttttacaggcactgaattgtgatcactggtttgatgcg 478 |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 23202 tttgacacacgtcttcggccacttttacaggccctgaattgtgatcactggtttgatgca 23143 Query: 479 gttgctgtatctgctgaggt 498 |||||||||||||||||||| Sbjct: 23142 gttgctgtatctgctgaggt 23123 Score = 153 bits (77), Expect = 7e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgcc 60 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 25269 ggtgggggcgaggagcgtcccggcggcgtcgacgaggatggccttgtgggtgatgtcgcc 25328 Query: 61 gtagatggcccgccggtagtcgtagtactcccgggccccca 101 ||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 25329 gtagatggccctccggtagtcgtagtactcccgcgccccca 25369 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 224 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 283 |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||| Sbjct: 23482 aggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgc 23423 Query: 284 tcagatttacagtacttcgaggaactttatcattactatacaactg 329 ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 23422 tcagatttacagtactttgaggaactttatcagtactatacaactg 23377 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 116 caggtgtacagaacaataggcgaaaagtatggggtgaagtactcggaggatgagatcttg 175 ||||| ||||||||||| |||||||||||||| || || ||||| ||||||||||||||| Sbjct: 24756 caggtatacagaacaattggcgaaaagtatggagtcaactactcagaggatgagatcttg 24697 Query: 176 atgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttaggta 228 ||||| ||| || ||| ||| ||||||||||||| | ||||||||| ||||| Sbjct: 24696 atgagatacaggagggcttatgcgcagccatggggtagatcgcggctgaggta 24644 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 495 aggttgcagcagaaaagccaaacccaacaat 525 ||||||| || |||||||||||||||||||| Sbjct: 23025 aggttgctgcggaaaagccaaacccaacaat 22995 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 95 gcccccaccgagcccatggcccaggt 120 |||||||||||||||||||| ||||| Sbjct: 25277 gcccccaccgagcccatggcgcaggt 25252
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 198 bits (100), Expect = 1e-47 Identities = 130/140 (92%) Strand = Plus / Minus Query: 359 gctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgttgtatccaac 418 |||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||| Sbjct: 109985 gctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagctgttgtatccaac 109926 Query: 419 tttgacacccgcctccggccacttttacaggcactgaattgtgatcactggtttgatgcg 478 |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 109925 tttgacacacgtcttcggccacttttacaggccctgaattgtgatcactggtttgatgca 109866 Query: 479 gttgctgtatctgctgaggt 498 |||||||||||||||||||| Sbjct: 109865 gttgctgtatctgctgaggt 109846 Score = 153 bits (77), Expect = 7e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgcc 60 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 111992 ggtgggggcgaggagcgtcccggcggcgtcgacgaggatggccttgtgggtgatgtcgcc 112051 Query: 61 gtagatggcccgccggtagtcgtagtactcccgggccccca 101 ||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 112052 gtagatggccctccggtagtcgtagtactcccgcgccccca 112092 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 224 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 283 |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||| Sbjct: 110205 aggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgc 110146 Query: 284 tcagatttacagtacttcgaggaactttatcattactatacaactg 329 ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 110145 tcagatttacagtactttgaggaactttatcagtactatacaactg 110100 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 116 caggtgtacagaacaataggcgaaaagtatggggtgaagtactcggaggatgagatcttg 175 ||||| ||||||||||| |||||||||||||| || || ||||| ||||||||||||||| Sbjct: 111479 caggtatacagaacaattggcgaaaagtatggagtcaactactcagaggatgagatcttg 111420 Query: 176 atgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttaggta 228 ||||| ||| || ||| ||| ||||||||||||| | ||||||||| ||||| Sbjct: 111419 atgagatacaggagggcttatgcgcagccatggggtagatcgcggctgaggta 111367 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 495 aggttgcagcagaaaagccaaacccaacaat 525 ||||||| || |||||||||||||||||||| Sbjct: 109748 aggttgctgcggaaaagccaaacccaacaat 109718 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 95 gcccccaccgagcccatggcccaggt 120 |||||||||||||||||||| ||||| Sbjct: 112000 gcccccaccgagcccatggcgcaggt 111975
>dbj|AK108402.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G05, full insert sequence Length = 1071 Score = 153 bits (77), Expect = 7e-34 Identities = 152/177 (85%) Strand = Plus / Plus Query: 349 tgatcccgatgctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgt 408 |||||| |||||| || |||| ||| |||| ||||||| ||| ||||| | ||| ||||| Sbjct: 579 tgatcctgatgctgaaaacgtatttaaagctttaagaaaggcaggtgtcaaaactgctgt 638 Query: 409 tgtatccaactttgacacccgcctccggccacttttacaggcactgaattgtgatcactg 468 ||| ||||| ||||| ||||| || ||||| || ||||| | ||||| ||||||||||| Sbjct: 639 tgtctccaattttgatacccgtctacggcctctgttacatgttctgaagtgtgatcactg 698 Query: 469 gtttgatgcggttgctgtatctgctgaggttgcagcagaaaagccaaacccaacaat 525 ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct: 699 gtttgatgcggttgcggtctctgctgaggttgctgcagaaaagccaaacccaacaat 755 Score = 60.0 bits (30), Expect = 8e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 4 gggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgccgta 63 |||| ||| |||||||||| ||||||||||||||| ||| ||| |||| |||||||| Sbjct: 421 ggggacgacgagggtgccgacggcgtcgacgaggagggcgcggtgggtgacgtcgccgta 362 Query: 64 gatggcccgccggtagtcgtagtactcccg 93 || || | |||||||||||||||||||| Sbjct: 361 gacggacttgcggtagtcgtagtactcccg 332 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 140 aagtatggggtgaagtactcggaggatgagatc 172 |||||||| ||||||||||| || ||||||||| Sbjct: 461 aagtatggagtgaagtactccgaagatgagatc 493
>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04, complete sequence Length = 107631 Score = 127 bits (64), Expect = 4e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 224 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 283 ||||||||||||||||| ||||||||||||||| ||||||| || || || || |||||| Sbjct: 68931 aggtatgtcgatgacggaaggcccttttggcaatatatagtgagctcatcaaccggctgc 68990 Query: 284 tcagatttacagtacttcgaggaactttatcattactatacaactgagaagg 335 |||||| ||||||||||||||||||| || || ||||| ||||||||||||| Sbjct: 68991 tcagatctacagtacttcgaggaactgtaccagtactacacaactgagaagg 69042
>gb|AY108297.1| Zea mays PCO134827 mRNA sequence Length = 488 Score = 115 bits (58), Expect = 1e-22 Identities = 169/206 (82%) Strand = Plus / Plus Query: 140 aagtatggggtgaagtactcggaggatgagatcttgatgaggtaccggcaggcatattcg 199 |||||||| |||||||||||||| || |||||| ||||||| ||||||| |||||| | Sbjct: 146 aagtatggagtgaagtactcggaagacgagatcctgatgagataccggcgggcatacgag 205 Query: 200 cagccatggggcaaatcgcggcttaggtatgtcgatgacgggaggcccttttggcaacat 259 || |||||||| ||| || || |||||||| ||||| ||||| |||||||||| || Sbjct: 206 caaccatggggtggatcacgtctcaggtatgtggatgatgggagaaccttttggcagcac 265 Query: 260 atagttagttcttctacaggctgctcagatttacagtacttcgaggaactttatcattac 319 ||||| | |||||||||||| || |||||| ||||||||| |||||||| ||||| ||| Sbjct: 266 atagtcacttcttctacaggatgttcagatgcacagtactttgaggaactctatcaatac 325 Query: 320 tatacaactgagaaggcctggcagct 345 | || || || ||||||||| |||| Sbjct: 326 tttatgacagaaaaggcctggaagct 351 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 4 gggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgccgta 63 |||| ||| |||||||||| ||||||||||||||| ||| |||||||| |||||||| Sbjct: 106 ggggacgacgagggtgccgacggcgtcgacgaggagggcgcggtgcgtgacgtcgccgta 47 Query: 64 gatggcccgccggtagtcgtagtactcccg 93 ||| | | |||||||||||||||||||| Sbjct: 46 gatagacttgcggtagtcgtagtactcccg 17
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15, complete sequence Length = 143071 Score = 107 bits (54), Expect = 4e-20 Identities = 126/150 (84%) Strand = Plus / Plus Query: 349 tgatcccgatgctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgt 408 |||||| |||||| || |||| ||| |||| ||||||| ||| ||||| | ||| ||||| Sbjct: 48766 tgatcctgatgctgaaaacgtatttaaagctttaagaaaggcaggtgtcaaaactgctgt 48825 Query: 409 tgtatccaactttgacacccgcctccggccacttttacaggcactgaattgtgatcactg 468 ||| ||||| ||||| ||||| || ||||| || ||||| | ||||| ||||||||||| Sbjct: 48826 tgtctccaattttgatacccgtctacggcctctgttacatgttctgaagtgtgatcactg 48885 Query: 469 gtttgatgcggttgctgtatctgctgaggt 498 ||||||||||||||| || ||||||||||| Sbjct: 48886 gtttgatgcggttgcggtctctgctgaggt 48915 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 224 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 283 |||||||| ||||| || || ||||||||||| |||||||| | ||||||||| ||||| Sbjct: 48558 aggtatgtggatgatggtagacccttttggcagcatatagtcacttcttctactggctgt 48617 Query: 284 tcagatttacagtacttcgaggaactttatcattactata 323 |||||||| |||||||| |||||||| ||||| ||||||| Sbjct: 48618 tcagatttgcagtactttgaggaactatatcagtactata 48657 Score = 60.0 bits (30), Expect = 8e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 4 gggggcgaggagggtgccggcggcgtcgacgaggatggccttgtgcgtgatttcgccgta 63 |||| ||| |||||||||| ||||||||||||||| ||| ||| |||| |||||||| Sbjct: 47195 ggggacgacgagggtgccgacggcgtcgacgaggagggcgcggtgggtgacgtcgccgta 47136 Query: 64 gatggcccgccggtagtcgtagtactcccg 93 || || | |||||||||||||||||||| Sbjct: 47135 gacggacttgcggtagtcgtagtactcccg 47106 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 495 aggttgcagcagaaaagccaaacccaacaat 525 ||||||| ||||||||||||||||||||||| Sbjct: 49051 aggttgctgcagaaaagccaaacccaacaat 49081 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 140 aagtatggggtgaagtactcggaggatgagatc 172 |||||||| ||||||||||| || ||||||||| Sbjct: 47419 aagtatggagtgaagtactccgaagatgagatc 47451
>gb|AY106595.1| Zea mays PCO125917 mRNA sequence Length = 521 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 453 tgaattgtgatcactggtttgatgcggttgctgtatctgctgaggttgcagcagaaaagc 512 |||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||| |||| Sbjct: 11 tgaaatgtgaccactggtttgatgcagttgcagtctctgcagaggttgcagcagagaagc 70 Query: 513 c 513 | Sbjct: 71 c 71
>gb|AY022128.1| Oryza sativa microsatellite MRG4453 containing (TC)X18, closest to marker C596, genomic sequence Length = 236 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 1 ggtgggggcgaggagggtgccggcggcgtcgacgaggatggccttgtg 48 ||||||||||||||| || ||||||||||| || |||||||||||||| Sbjct: 51 ggtgggggcgaggagcgtcccggcggcgtcaactaggatggccttgtg 4 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 95 gcccccaccgagcccatggcccaggt 120 |||||||||||||||||||| ||||| Sbjct: 43 gcccccaccgagcccatggcgcaggt 68
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 452 ctgaattgtgatcactggtttgatgcggttgctgtatctgctgaggt 498 ||||| || ||||| || |||||||| ||||||| |||||||||||| Sbjct: 21611034 ctgaaatgcgatcattgatttgatgcagttgctgaatctgctgaggt 21611080
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 452 ctgaattgtgatcactggtttgatgcggttgctgtatctgctgaggt 498 ||||| || ||||| || |||||||| ||||||| |||||||||||| Sbjct: 21539355 ctgaaatgcgatcattgatttgatgcagttgctgaatctgctgaggt 21539401
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 ctgaattgtgatcactggtttgatgcggttgctgtatctgctgaggt 498 ||||| || ||||| || |||||||| ||||||| |||||||||||| Sbjct: 34855 ctgaaatgcgatcattgatttgatgcagttgctgaatctgctgaggt 34809
>gb|AY022244.1| Oryza sativa microsatellite MRG4569 containing (TG)X18, closest to marker C596, genomic sequence Length = 236 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 95 gcccccaccgagcccatggcccaggt 120 |||||||||||||||||||| ||||| Sbjct: 7 gcccccaccgagcccatggcgcaggt 32
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 tggtttgatgcggttgctgta 487 ||||||||||||||||||||| Sbjct: 1569995 tggtttgatgcggttgctgta 1569975
>gb|AC158357.4| Mus musculus BAC clone RP23-434L22 from chromosome 8, complete sequence Length = 217671 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 tcattactatacaactgagaa 333 ||||||||||||||||||||| Sbjct: 141496 tcattactatacaactgagaa 141476
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 tgctgaggttgcagcagaaaa 510 ||||||||||||||||||||| Sbjct: 16702 tgctgaggttgcagcagaaaa 16682 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 tgctgaggttgcagcagaaaa 510 ||||||||||||||||||||| Sbjct: 6550 tgctgaggttgcagcagaaaa 6530
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 tgctgaggttgcagcagaaaa 510 ||||||||||||||||||||| Sbjct: 159442 tgctgaggttgcagcagaaaa 159422
>emb|CR933522.11| Zebrafish DNA sequence from clone CH211-22N13 in linkage group 1, complete sequence Length = 121726 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 catatagttagttcttctaca 277 ||||||||||||||||||||| Sbjct: 1239 catatagttagttcttctaca 1259
>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1, complete sequence Length = 208746 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 catatagttagttcttctaca 277 ||||||||||||||||||||| Sbjct: 762 catatagttagttcttctaca 742
>emb|AL356003.9| Human DNA sequence from clone RP11-33N11 on chromosome X Contains a ribonucleoprotein pseudogene and a CpG island, complete sequence Length = 46778 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 ggcaacatatagttagttctt 272 ||||||||||||||||||||| Sbjct: 7537 ggcaacatatagttagttctt 7517
>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 5/6 Length = 263335 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 tggtttgatgcggttgctgta 487 ||||||||||||||||||||| Sbjct: 209165 tggtttgatgcggttgctgta 209145
>gb|DQ123841.1| Agrotis segetum nucleopolyhedrovirus, complete genome Length = 147544 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ggtgccggcggcgtcgacgag 36 ||||||||||||||||||||| Sbjct: 19272 ggtgccggcggcgtcgacgag 19292
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 tgctgaggttgcagcagaaaa 510 ||||||||||||||||||||| Sbjct: 17639944 tgctgaggttgcagcagaaaa 17639924 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 tgctgaggttgcagcagaaaa 510 ||||||||||||||||||||| Sbjct: 17629792 tgctgaggttgcagcagaaaa 17629772
>dbj|AK069708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031M23, full insert sequence Length = 2455 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 tgctgaggttgcagcagaaaa 510 ||||||||||||||||||||| Sbjct: 1780 tgctgaggttgcagcagaaaa 1800
>dbj|D16415.1|WHTWZF1A Triticum aestivum gene for zinc-finger protein WZF1, complete cds Length = 2862 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 ggtgggggcgaggagggtgccggcggcgt 29 |||||||||||||||| ||||||||||| Sbjct: 1066 ggtgggggcgaggaggtggccggcggcgt 1038
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 16 ggtgccggcggcgtcgacgaggatggcct 44 |||||||||||||||| ||||| |||||| Sbjct: 4230994 ggtgccggcggcgtcgccgaggttggcct 4230966
>emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chromosome 14, complete sequence Length = 206957 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 497 gttgcagcagaaaagccaaac 517 ||||||||||||||||||||| Sbjct: 116802 gttgcagcagaaaagccaaac 116822
>gb|BC085705.1| Rattus norvegicus staufen, RNA binding protein, homolog 2 (Drosophila), mRNA (cDNA clone MGC:93196 IMAGE:7190916), complete cds Length = 2328 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 4 gggggcgaggagggtgccggcggcgtcg 31 |||| ||||||||| ||||||||||||| Sbjct: 47 ggggccgaggagggagccggcggcgtcg 74
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 99871 tacagtacttcgaggaactt 99890
>ref|XM_364536.1| Magnaporthe grisea 70-15 hypothetical protein (MG09390.4) partial mRNA Length = 1890 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cgtcgacgaggatggccttg 46 |||||||||||||||||||| Sbjct: 1021 cgtcgacgaggatggccttg 1002
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 12052444 tacagtacttcgaggaactt 12052425
>emb|AL928544.5| Mouse DNA sequence from clone RP23-358C5 on chromosome 2, complete sequence Length = 126329 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ttgcagcagaaaagccaaacccaa 521 |||||||||||||| ||||||||| Sbjct: 3004 ttgcagcagaaaagtcaaacccaa 3027
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 133537 tacagtacttcgaggaactt 133518
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 2163687 gccggcggcgtcggcgaggatggc 2163710 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 2160255 gccggcggcgtcggcgaggatggc 2160278 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 2157754 gccggcggcgtcggcgaggatggc 2157731 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 2157448 gccggcggcgtcggcgaggatggc 2157425 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 1384481 gccggcggcgtcggcgaggatggc 1384504 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 1384175 gccggcggcgtcggcgaggatggc 1384198 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 1366371 gccggcggcgtcggcgaggatggc 1366394 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gccggcggcgtcgacgaggatggc 42 ||||||||||||| |||||||||| Sbjct: 1364229 gccggcggcgtcggcgaggatggc 1364252
>gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, complete sequence Length = 126929 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgggggcgaggagggtgcc 21 |||||||||||||||||||| Sbjct: 28022 gtgggggcgaggagggtgcc 28003
>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0089D15, from Chromosome 10, complete sequence Length = 164679 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 155752 tacagtacttcgaggaactt 155771
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 5197528 tacagtacttcgaggaactt 5197509
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 4158923 tacagtacttcgaggaactt 4158942
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 gcgaggagggtgccggcggcgtcg 31 |||||||||| ||||||||||||| Sbjct: 1446352 gcgaggagggagccggcggcgtcg 1446329
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 12049207 tacagtacttcgaggaactt 12049188
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 73024 tacagtacttcgaggaactt 73005
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 cggcggcgtcgacgaggatg 40 |||||||||||||||||||| Sbjct: 4368813 cggcggcgtcgacgaggatg 4368832
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 gcgaggagggtgccggcggcgtcg 31 |||||||||| ||||||||||||| Sbjct: 64465 gcgaggagggagccggcggcgtcg 64442
>dbj|AP005104.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0042E08 Length = 166257 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 23170 tacagtacttcgaggaactt 23151
>dbj|AK107519.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F07, full insert sequence Length = 2145 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 12 tacagtacttcgaggaactt 31
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 aaggcctggcagctcattga 351 |||||||||||||||||||| Sbjct: 177386 aaggcctggcagctcattga 177405
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 4159744 tacagtacttcgaggaactt 4159763
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tacagtacttcgaggaactt 310 |||||||||||||||||||| Sbjct: 5264005 tacagtacttcgaggaactt 5263986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,734,592 Number of Sequences: 3902068 Number of extensions: 3734592 Number of successful extensions: 80436 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79693 Number of HSP's gapped (non-prelim): 737 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
