ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
2gb|AY107876.1| Zea mays PCO089175 mRNA sequence 208 1e-50
3gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom... 178 9e-42
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 178 9e-42
5emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0... 178 9e-42
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
7gb|BT024061.1| Zea mays clone EL01N0441H04 mRNA sequence 129 8e-27
8gb|DQ224372.1| Glycine max ornithine aminotransferase mRNA, comp... 86 1e-13
9emb|AJ278819.1|MTR278819 Medicago truncatula mRNA for delta orni... 86 1e-13
10gb|AF177590.1|AF177590 Vitis vinifera ornithine aminotransferase... 50 0.006
11ref|NM_123987.2| Arabidopsis thaliana delta-OAT; ornithine-oxo-a... 40 5.4
12ref|XM_452891.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C15455g ... 40 5.4
13gb|AF068714.1| Caenorhabditis elegans cosmid B0348, complete seq... 40 5.4
14emb|Z80774.1|HSU173H7 Human DNA sequence from clone LL0XNC01-173... 40 5.4
15emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.4
16gb|AC097505.2| Homo sapiens BAC clone RP11-362J17 from 4, comple... 40 5.4
17gb|BT023421.1| Arabidopsis thaliana At5g46180 gene, complete cds 40 5.4
18dbj|AB006698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.4
19gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 5.4 
>dbj|AK099445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021G10, full
           insert sequence
          Length = 1814

 Score =  248 bits (125), Expect = 1e-62
 Identities = 182/201 (90%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
           ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 667 tgtggatgttttcatggtcggacattaggtgtcatctctatgagttgtgataatgatgca 726

                                                                       
Query: 62  actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
           |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 727 actcgtggttttggcccattggttcctggccatcttaaagttgattttggagacactgat 786

                                                                       
Query: 122 gggttggagaaaatctttaaagagcatggggatcgcatatgcggttttttgtttgaacca 181
           ||||||||||||||||||||||| ||||| ||  | ||||| ||||||||||||||||||
Sbjct: 787 gggttggagaaaatctttaaagatcatggcgagaggatatgtggttttttgtttgaacca 846

                                
Query: 182 atccaaggagaagctggggta 202
           |||||||||||||||||||||
Sbjct: 847 atccaaggagaagctggggta 867
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>gb|AY107876.1| Zea mays PCO089175 mRNA sequence
          Length = 1203

 Score =  208 bits (105), Expect = 1e-50
 Identities = 177/201 (88%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
           ||||| ||||||||||| || ||  | || ||||| || |||||||||||||||||||||
Sbjct: 37  tgtgggtgtttccatggtcgaactcttggtgtcatttccatgagctgtgacaacgatgca 96

                                                                       
Query: 62  actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct: 97  actcgtggttttggtcctttggttcctggccatcttaaagttgattttggagatattgat 156

                                                                       
Query: 122 gggttggagaaaatctttaaagagcatggggatcgcatatgcggttttttgtttgaacca 181
           |||||  ||||||||||  |||||| ||| ||||| || || |||||||| |||||||| 
Sbjct: 157 gggttaaagaaaatcttcgaagagcttggagatcggatttgtggttttttatttgaacct 216

                                
Query: 182 atccaaggagaagctggggta 202
           |||||||| ||||||||||||
Sbjct: 217 atccaaggtgaagctggggta 237
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>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
             sequence
          Length = 141691

 Score =  178 bits (90), Expect = 9e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                         
Query: 2     tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
             ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 79702 tgtggatgttttcatggtcggacattaggtgtcatctctatgagttgtgataatgatgca 79643

                                                                         
Query: 62    actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
             |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 79642 actcgtggttttggcccattggttcctggccatcttaaagttgattttggagacactgat 79583

                                   
Query: 122   gggttggagaaaatctttaaag 143
             ||||||||||||||||||||||
Sbjct: 79582 gggttggagaaaatctttaaag 79561



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                            
Query: 158   atatgcggttttttgtttgaaccaatccaaggagaagctggggtatg 204
             ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 79463 atatgtggttttttgtttgaaccaatccaaggagaagctggggtatg 79417
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  178 bits (90), Expect = 9e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 2        tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
                ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 24704155 tgtggatgttttcatggtcggacattaggtgtcatctctatgagttgtgataatgatgca 24704096

                                                                            
Query: 62       actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
                |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 24704095 actcgtggttttggcccattggttcctggccatcttaaagttgattttggagacactgat 24704036

                                      
Query: 122      gggttggagaaaatctttaaag 143
                ||||||||||||||||||||||
Sbjct: 24704035 gggttggagaaaatctttaaag 24704014



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                               
Query: 158      atatgcggttttttgtttgaaccaatccaaggagaagctggggtatg 204
                ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24703916 atatgtggttttttgtttgaaccaatccaaggagaagctggggtatg 24703870
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>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136470

 Score =  178 bits (90), Expect = 9e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                          
Query: 2      tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
              ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 135442 tgtggatgttttcatggtcggacattaggtgtcatctctatgagttgtgataatgatgca 135383

                                                                          
Query: 62     actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
              |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 135382 actcgtggttttggcccattggttcctggccatcttaaagttgattttggagacactgat 135323

                                    
Query: 122    gggttggagaaaatctttaaag 143
              ||||||||||||||||||||||
Sbjct: 135322 gggttggagaaaatctttaaag 135301



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                             
Query: 158    atatgcggttttttgtttgaaccaatccaaggagaagctggggtatg 204
              ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 135203 atatgtggttttttgtttgaaccaatccaaggagaagctggggtatg 135157
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  178 bits (90), Expect = 9e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 2        tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
                ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||
Sbjct: 24620985 tgtggatgttttcatggtcggacattaggtgtcatctctatgagttgtgataatgatgca 24620926

                                                                            
Query: 62       actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
                |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 24620925 actcgtggttttggcccattggttcctggccatcttaaagttgattttggagacactgat 24620866

                                      
Query: 122      gggttggagaaaatctttaaag 143
                ||||||||||||||||||||||
Sbjct: 24620865 gggttggagaaaatctttaaag 24620844



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                               
Query: 158      atatgcggttttttgtttgaaccaatccaaggagaagctggggtatg 204
                ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24620746 atatgtggttttttgtttgaaccaatccaaggagaagctggggtatg 24620700
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>gb|BT024061.1| Zea mays clone EL01N0441H04 mRNA sequence
          Length = 1350

 Score =  129 bits (65), Expect = 8e-27
 Identities = 119/137 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
           ||||| ||||||||||| || ||  | || ||||| || ||||||||||||||||  || 
Sbjct: 115 tgtgggtgtttccatggtcgaactcttggtgtcatttccatgagctgtgacaacggggcg 174

                                                                       
Query: 62  actcgtggttttggtcctttggttcctggccatcttaaagttgatttcggagacattaat 121
            |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct: 175 gctcgtggttttggtcctttggttcctggccatcttaaagttgattttggagatattgat 234

                            
Query: 122 gggttggagaaaatctt 138
           |||||  ||||||||||
Sbjct: 235 gggttaaagaaaatctt 251



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 142 agagcatggggatcgcatatgcggttttttgtttgaaccaatccaaggagaagctggggt 201
           ||||| ||| ||||| || || |||||||| |||||||| |||||||| |||||||||||
Sbjct: 336 agagcttggagatcggatttgtggttttttatttgaacctatccaaggtgaagctggggt 395

            
Query: 202 a 202
           |
Sbjct: 396 a 396
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>gb|DQ224372.1| Glycine max ornithine aminotransferase mRNA, complete cds
          Length = 1766

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
           ||||| || |||||||| || ||| | || ||||||||| ||||||||||||| || || 
Sbjct: 580 tgtggctgcttccatggtcgtacactaggtgtcatatctttgagctgtgacaatgaagct 639

                                                          
Query: 62  actcgtggttttggtcctttggttcctggccatcttaaagttgattt 108
           || |||||||||||||||||  | |||||| ||||||||||||||||
Sbjct: 640 acccgtggttttggtcctttattgcctggcaatcttaaagttgattt 686
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>emb|AJ278819.1|MTR278819 Medicago truncatula mRNA for delta ornithine aminotransferase (oat
           gene)
          Length = 1696

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtggatgtttccatggccggacattgggagtcatatctatgagctgtgacaacgatgca 61
           ||||| || ||| |||| || |||||||| |||||||||||||| ||||| || || || 
Sbjct: 591 tgtggctgcttcaatggtcgtacattgggtgtcatatctatgagttgtgataatgaagct 650

                                                          
Query: 62  actcgtggttttggtcctttggttcctggccatcttaaagttgattt 108
           || |||||||||||||||||  | || ||||||||||||||||||||
Sbjct: 651 acccgtggttttggtcctttaataccaggccatcttaaagttgattt 697
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>gb|AF177590.1|AF177590 Vitis vinifera ornithine aminotransferase mRNA, complete cds
          Length = 1783

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                       
Query: 12  tccatggccggacattgggagtcatatctatgagctgtgacaacgatgcaactcgtggtt 71
           ||||||| || |||||||  || || |||||||||||||| || || || || || ||||
Sbjct: 589 tccatggtcgtacattggctgttatttctatgagctgtgataatgaggctacacgaggtt 648

                                                
Query: 72  ttggtcctttggttcctggccatcttaaagttgattt 108
           |||| || ||| | || || |||||||||||||||||
Sbjct: 649 ttgggcccttgttgccaggtcatcttaaagttgattt 685
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>ref|NM_123987.2| Arabidopsis thaliana delta-OAT; ornithine-oxo-acid transaminase
           AT5G46180 (delta-OAT) mRNA, complete cds
          Length = 1719

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  atgagctgtgacaacgatgcaactcgtggttttggtcctttggttcctggccatcttaaa 100
           ||||| |||||||| ||||| |||||||| || || || ||| | || ||  ||||||||
Sbjct: 559 atgagttgtgacaatgatgctactcgtggattcgggccattgttgccagggaatcttaaa 618

                   
Query: 101 gttgattt 108
           ||||||||
Sbjct: 619 gttgattt 626
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>ref|XM_452891.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C15455g predicted mRNA
          Length = 1701

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 165 gttttttgtttgaaccaatccaag 188
           ||||| ||||||||||||||||||
Sbjct: 975 gttttgtgtttgaaccaatccaag 952
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>gb|AF068714.1| Caenorhabditis elegans cosmid B0348, complete sequence
          Length = 45125

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tgcaactcgtggttttggtc 77
             ||||||||||||||||||||
Sbjct: 13086 tgcaactcgtggttttggtc 13067
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>emb|Z80774.1|HSU173H7 Human DNA sequence from clone LL0XNC01-173H7 on chromosome X,
            complete sequence
          Length = 32899

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  agaaactaattctcccctag 298
            ||||||||||||||||||||
Sbjct: 4202 agaaactaattctcccctag 4183
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 165     gttttttgtttgaaccaatccaag 188
               ||||| ||||||||||||||||||
Sbjct: 1342544 gttttgtgtttgaaccaatccaag 1342521
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>gb|AC097505.2| Homo sapiens BAC clone RP11-362J17 from 4, complete sequence
          Length = 184043

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   agaaaatctttaaagagcat 148
             ||||||||||||||||||||
Sbjct: 50252 agaaaatctttaaagagcat 50233
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>gb|BT023421.1| Arabidopsis thaliana At5g46180 gene, complete cds
          Length = 1532

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                       
Query: 41  atgagctgtgacaacgatgcaactcgtggttttggtcctttggttcctggccatcttaaa 100
           ||||| |||||||| ||||| |||||||| || || || ||| | || ||  ||||||||
Sbjct: 572 atgagttgtgacaatgatgctactcgtggattcgggccattgttgccagggaatcttaaa 631

                   
Query: 101 gttgattt 108
           ||||||||
Sbjct: 632 gttgattt 639
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>dbj|AB006698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19
          Length = 84510

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                         
Query: 41    atgagctgtgacaacgatgcaactcgtggttttggtcctttggttcctggccatcttaaa 100
             ||||| |||||||| ||||| |||||||| || || || ||| | || ||  ||||||||
Sbjct: 77850 atgagttgtgacaatgatgctactcgtggattcgggccattgttgccagggaatcttaaa 77791

                     
Query: 101   gttgattt 108
             ||||||||
Sbjct: 77790 gttgattt 77783
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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     gtggttttggtcctttggtt 85
              ||||||||||||||||||||
Sbjct: 565172 gtggttttggtcctttggtt 565153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,256,830
Number of Sequences: 3902068
Number of extensions: 3256830
Number of successful extensions: 59147
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 59084
Number of HSP's gapped (non-prelim): 68
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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