ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal16o03 |
|---|---|
| Clone Library Name | barley_pub |
>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)| Length = 303 Score = 112 bits (280), Expect = 7e-25 Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 4/80 (5%) Frame = +2 Query: 80 RAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSD----KSPK 247 R A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK GKTPA +D KSPK Sbjct: 215 RGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPK 272 Query: 248 SGGSVACKSCTKTFNSEVAL 307 SGGSV CKSC+KTFNSE+AL Sbjct: 273 SGGSVPCKSCSKTFNSEMAL 292
>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 307 Score = 96.7 bits (239), Expect = 4e-20 Identities = 54/83 (65%), Positives = 61/83 (73%), Gaps = 8/83 (9%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKG-AVHVATPHPAKKVGKTPATSDKS------ 241 A S +KTP++DKKAK+ATPS QKTG KKG AVHVATPHPAK GKT +DKS Sbjct: 211 AESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKS 268 Query: 242 -PKSGGSVACKSCTKTFNSEVAL 307 PKSGGSV CK C+K+F SE AL Sbjct: 269 APKSGGSVPCKPCSKSFISETAL 291
>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)| Length = 300 Score = 88.2 bits (217), Expect = 1e-17 Identities = 52/82 (63%), Positives = 59/82 (71%), Gaps = 8/82 (9%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKG-AVHVATPHPAKKVGKTPATSDKS------ 241 A S +KTP++DKKAK+ATPS QKTG KKG AVHVATPHPAK GKT +DKS Sbjct: 211 AESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKS 268 Query: 242 -PKSGGSVACKSCTKTFNSEVA 304 PKSG V CKSC+K+F SE A Sbjct: 269 APKSG--VPCKSCSKSFISETA 288
>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)| Length = 269 Score = 78.2 bits (191), Expect = 1e-14 Identities = 44/78 (56%), Positives = 49/78 (62%) Frame = +2 Query: 80 RAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGS 259 R A S KTPV DKKAK+ TP QKT KKG HVATPHP+K+ KT PKS GS Sbjct: 191 RKADSATKTPVTDKKAKLTTP--QKTDGKKGGGHVATPHPSKQASKT-------PKSAGS 241 Query: 260 VACKSCTKTFNSEVALAS 313 CK C ++F SE AL S Sbjct: 242 HHCKPCNRSFGSEGALDS 259
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 75.5 bits (184), Expect = 9e-14 Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 8/79 (10%) Frame = +2 Query: 101 KTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGK------TPATS--DKSPKSGG 256 K P ++KKAK TP QKT KK VHVATPHP+K+ GK T TS ++PKS G Sbjct: 208 KNPASNKKAKFVTP--QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAG 265 Query: 257 SVACKSCTKTFNSEVALAS 313 + CKSCT+TF SE+ L S Sbjct: 266 AFGCKSCTRTFTSEMGLQS 284
>HD2A_SOYBN (Q8LJS2) Histone deacetylase 2a (HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 295 Score = 75.5 bits (184), Expect = 9e-14 Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 1/73 (1%) Frame = +2 Query: 92 SDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTP-ATSDKSPKSGGSVAC 268 S KTP++ KKAK ATP +KT KK +VHVATPHP+KK GKTP +T ++P S G ++C Sbjct: 215 SAAKTPISAKKAKTATP--EKTDGKK-SVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSC 271 Query: 269 KSCTKTFNSEVAL 307 SC K+F +E L Sbjct: 272 ASCKKSFTNEAGL 284
>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)| Length = 306 Score = 63.9 bits (154), Expect = 3e-10 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Frame = +2 Query: 101 KTPVADKKAK-IATPSG--QKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGG-SVAC 268 KTPV+ KKAK A P+ QKT +KK H ATPHPAKK GK+P +++SPKSGG S Sbjct: 217 KTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSGG 276 Query: 269 KSCTKTFNS 295 + K FNS Sbjct: 277 NNNKKPFNS 285
>HD2A_ARATH (Q9FVE6) Histone deacetylase 2a (HD-tuins protein 1)| Length = 245 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/78 (43%), Positives = 43/78 (55%) Frame = +2 Query: 80 RAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGS 259 RA + K PV+ KKAK+A + QKT +KK K GK +++SPKS Sbjct: 174 RANETTPKAPVSAKKAKVAV-TPQKTDEKK------------KGGKA---ANQSPKSASQ 217 Query: 260 VACKSCTKTFNSEVALAS 313 V+C SC KTFNS AL S Sbjct: 218 VSCGSCKKTFNSGNALES 235
>TAU_PONPY (Q5S6V2) Microtubule-associated protein tau| Length = 757 Score = 38.1 bits (87), Expect = 0.017 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATSDKSPKSG 253 + ++K AD K KIATP G +KG + AT PAK KTP +S + PKSG Sbjct: 451 SGAKEMKLKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSSGEPPKSG 508
>TAU_PAPHA (Q9MYX8) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 382 Score = 38.1 bits (87), Expect = 0.017 Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +2 Query: 95 DIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATSDKSPKSG 253 D K AD K KIATP G +KG + AT PAK KTP +S + PKSG Sbjct: 80 DKKAKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSSGEPPKSG 133
>TAU_HUMAN (P10636) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 757 Score = 38.1 bits (87), Expect = 0.017 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATSDKSPKSG 253 + ++K AD K KIATP G +KG + AT PAK KTP +S + PKSG Sbjct: 451 SGAKEMKLKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSSGEPPKSG 508
>H1B_STRPU (P15869) Histone H1-beta, late embryonic| Length = 211 Score = 36.2 bits (82), Expect = 0.063 Identities = 25/68 (36%), Positives = 29/68 (42%) Frame = +2 Query: 80 RAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGS 259 + A K P A K AK P+ +K KK A A P PAKK K PA + K Sbjct: 148 KPAAKKAKKPAAKKAAK--KPAAKKPAAKKAA---AKPAPAKKAAKKPAAKKAAKKVAKK 202 Query: 260 VACKSCTK 283 A K K Sbjct: 203 PAAKKAAK 210
>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 751 Score = 34.3 bits (77), Expect = 0.24 Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +2 Query: 98 IKTPVADKK--AKIATPSGQKTGDKKGAVHVATPHPAKKV--GKTPATSDKSPKSG 253 +K AD K AKIATP G T +KG + AT PAK KTP S + PKSG Sbjct: 448 MKLKGADGKTGAKIATPRGAATPGQKGTSN-ATRIPAKTTPSPKTPPGSGEPPKSG 502
>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) Length = 920 Score = 32.7 bits (73), Expect = 0.70 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -1 Query: 230 WLLGSCLPSWPGAGSQHGQPPSCHLFSGLMVLQFWPSCQQQGS*YH 93 W L +C P W GSQ G PP H +++ W + + G H Sbjct: 21 WPLAACEPGWTTRGSQEGSPPLQH----ELIIPQWRTSESPGRGKH 62
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 32.3 bits (72), Expect = 0.92 Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +2 Query: 98 IKTPVADKK--AKIATPSGQKTGDKKGAVHVATPHPAKKV--GKTPATSDKSPKSG 253 +K AD K AKIATP G + +KG + AT PAK KTP S + PKSG Sbjct: 429 MKLKGADGKTGAKIATPRGAASPAQKGTSN-ATRIPAKTTPSPKTPPGSGEPPKSG 483
>H11_VOLCA (Q08864) Histone H1-I| Length = 260 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/48 (45%), Positives = 25/48 (52%) Frame = +2 Query: 104 TPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPK 247 TP A+K K ATP + G KK ATP P K K+PA D PK Sbjct: 190 TPKAEKPKKAATP--KSAGKKK-----ATPKP-KAAPKSPAKKDAKPK 229
>Y287_MYCLE (O69601) Hypothetical protein ML0287| Length = 222 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -3 Query: 171 PFLSPVFW--PDGVAILAFLSATGVLISLPAALFFPV 67 P L P+FW P+G A L AT V+I + L FP+ Sbjct: 10 PTLDPMFWIGPEGFFAAAMLPATLVIIFVETGLLFPL 46
>H12_GLYBA (P40264) Histone H1-II| Length = 232 Score = 31.2 bits (69), Expect = 2.0 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = +2 Query: 80 RAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGS 259 + A K P A KK K+A + TG+KK A P KK G+ + K PK+ + Sbjct: 104 KGASGSFKLPAAAKKEKVAKKPMKATGEKKPKA-AAKP---KKAGEKKKSIAKKPKAATA 159 Query: 260 VACK 271 K Sbjct: 160 TKVK 163
>EXBB1_VIBCH (O52043) Biopolymer transport exbB1 protein| Length = 228 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = -3 Query: 252 PDLGDLSLVAGVLPTFLAGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPA 85 P LG L V G++ F GVA T ++P DG+ + + +A G+LI++PA Sbjct: 124 PLLGLLGTVLGLIEMFK---GVAATTGS-ITPNVLADGLGVAMYTTAAGLLIAVPA 175
>BTNL9_HUMAN (Q6UXG8) Butyrophilin-like protein 9 precursor| Length = 535 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -1 Query: 233 RWLLGSCLPSWPGAGSQHGQPPSCHLFSGLMVLQFWPSCQ 114 RW LG+CL + P AG P +G VL W C+ Sbjct: 395 RWFLGACLAAVPRAGPARLSPA-----AGYWVLGLWNGCE 429
>ZFP37_RAT (O88553) Zinc finger protein 37 (Zfp-37)| Length = 601 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/73 (26%), Positives = 29/73 (39%) Frame = +2 Query: 89 GSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGSVAC 268 G K K K+ + T + K + T K ++P+ SDK+P SG C Sbjct: 204 GKGDKNQTGKKCEKVCRHTASHTKEDK----IHTGEKRKSPCRSPSKSDKAPGSGKPYEC 259 Query: 269 KSCTKTFNSEVAL 307 C K + + L Sbjct: 260 NQCGKVLSHKQGL 272
>RL14_RAT (Q63507) 60S ribosomal protein L14| Length = 213 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVH------VATPHPAKKVGKTPATSDKSP 244 AA + K P AK AT GQK +K + A P +K KTPA +P Sbjct: 152 AAAAKAKVP-----AKKATGPGQKAAAQKASAQKAAGQKAAPPAKGQKGQKTPAQKAPAP 206 Query: 245 KSGGSVA 265 K+ G A Sbjct: 207 KAAGKKA 213
>RL14_MOUSE (Q9CR57) 60S ribosomal protein L14| Length = 216 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATSDKSPKSGG 256 AA + K P +GQK +K A A P PAK K KTPA +PK+ G Sbjct: 155 AAAAKAKVPAKKATGPGKKAAGQKAPAQKAAGQKAAP-PAKGQKGQKTPAQKAPAPKAAG 213 Query: 257 SVA 265 A Sbjct: 214 KKA 216
>I23O_HUMAN (P14902) Indoleamine 2,3-dioxygenase (EC 1.13.11.42) (IDO)| (Indoleamine-pyrrole 2,3-dioxygenase) Length = 403 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 271 LAGHRPSRLGRLVAGCWGLAYLLGRVRG 188 L H+ RL RLV GC +AY+ G+ G Sbjct: 70 LTDHKSQRLARLVLGCITMAYVWGKGHG 97
>I20L2_HUMAN (Q9H9L3) Interferon-stimulated 20 kDa exonuclease-like 2 (EC| 3.1.-.-) Length = 353 Score = 30.0 bits (66), Expect = 4.5 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +2 Query: 101 KTPVADKKAKIATPSGQ-KTGDKKGAVHVATPHPAKKVGKTPATSD 235 KTP KK A+ +G + DKK AV TP P+KK A D Sbjct: 72 KTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVD 117
>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3119 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 137 TPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGSVACKS 274 +P +K +K+ +TP KKVG+ A S +S SG A KS Sbjct: 1159 SPIRRKGKEKEPGEQASTPMSPKKVGEASAASRQSDTSGPVTASKS 1204
>TAU_PANTR (Q5YCW1) Microtubule-associated protein tau| Length = 775 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATS 232 + ++K AD K KIATP G +KG + AT PAK KTP +S Sbjct: 451 SGAKEMKLKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSS 501
>TAU_MACMU (P57786) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 458 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +2 Query: 95 DIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATS 232 D K AD K KIATP G +KG + AT PAK KTP +S Sbjct: 138 DKKAKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSS 184
>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau| Length = 775 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATS 232 + ++K AD K KIATP G +KG + AT PAK KTP +S Sbjct: 451 SGAKEMKLKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSS 501
>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau| Length = 775 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +2 Query: 83 AAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK--KVGKTPATS 232 + ++K AD K KIATP G +KG + AT PAK KTP +S Sbjct: 451 SGAKEMKLKGADGKTKIATPRGAAPPGQKGQAN-ATRIPAKTPPAPKTPPSS 501
>H2AY_RAT (Q02874) Core histone macro-H2A.1 (Histone macroH2A1) (mH2A1)| (H2A.y) (H2A/y) Length = 370 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +2 Query: 98 IKTPVADKKAKIAT---PSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGSV 262 I TP KKAK + P +KTG KKGA K +T++ +P G +V Sbjct: 126 IITPPPAKKAKSPSQKKPVAKKTGGKKGARKSKKQGEVSKAASADSTTEGAPTDGFTV 183
>OPGH_XANCV (Q83Z42) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)| Length = 643 Score = 29.6 bits (65), Expect = 5.9 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -3 Query: 267 QATDPPDLG--DLSLVAGVLPTFLAGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLIS 94 Q T PP +G L+ G T +A W + V WPDG+++L G L+ Sbjct: 50 QRTSPPGIGVRRFYLIGGTFAT----TAIAVWV---MLSVLWPDGISVL-----EGCLLG 97 Query: 93 LPAALF 76 L LF Sbjct: 98 LFVLLF 103
>OPGH_XANAC (Q8PPR7) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)| Length = 645 Score = 29.6 bits (65), Expect = 5.9 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -3 Query: 267 QATDPPDLG--DLSLVAGVLPTFLAGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLIS 94 Q T PP +G L+ G T +A W + V WPDG+++L G L+ Sbjct: 50 QRTSPPGIGVRRFYLIGGTFAT----TAIAVWV---MLSVLWPDGISVL-----EGCLLG 97 Query: 93 LPAALF 76 L LF Sbjct: 98 LFVLLF 103
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/59 (25%), Positives = 25/59 (42%) Frame = +2 Query: 80 RAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGG 256 R+A S ++ PV + + + S + T KG P P + T +P +GG Sbjct: 32 RSASSTVEAPVVRRLKEAFSQSSESTEGAKGGQEKKKPSPKPQPSPQQQTKASAPSAGG 90
>POLG_HCVJK (Q68801) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3018 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -1 Query: 272 TCRPPTLQTWATCRWLLGSCLPSWPGAGSQHGQPPSCHLFSG 147 + RPPT + W C W+ GS GA P CH++ G Sbjct: 541 SARPPT-EPWFGCTWMNGSGYVKTCGA-------PPCHIYGG 574 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,402,991 Number of Sequences: 219361 Number of extensions: 1483178 Number of successful extensions: 4698 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4681 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
