ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal16n21 |
|---|---|
| Clone Library Name | barley_pub |
>ATCU_ECOLI (Q59385) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 833 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVAE 295 M C C RV+NA++S+ GVT VN V G P ++ V+ G AE Sbjct: 107 MSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 161
>ATCU_ECO57 (Q8XD24) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 833 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVAE 295 M C C RV+NA++S+ GVT VN V G P ++ V+ G AE Sbjct: 107 MSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 161
>ATCU_RHIME (Q9X5X3) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 827 Score = 37.4 bits (85), Expect = 0.023 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVT---VTGFVEPSKVLARVKSTG 283 M C C RV+ A+K++ GV SVN K T V+G E S + A VK G Sbjct: 91 MTCASCVSRVEKALKAVPGVADASVNLATEKATVRLVSGSAEISALAAAVKGAG 144 Score = 36.2 bits (82), Expect = 0.052 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTV--TGFVEPSKVLARVKSTG 283 M C C RRV+ A+ ++ GV + +VN + TV G E + VL V+ G Sbjct: 24 MTCASCVRRVEKAIAAVPGVASANVNLATERATVQFNGVPETTSVLRAVEKAG 76
>ATCU_YERPE (Q8ZCA7) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 961 Score = 36.6 bits (83), Expect = 0.040 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVAEM 298 M C C +V+NA++ + GV VN VTG ++A VK+ G AE+ Sbjct: 235 MSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAEI 290 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +2 Query: 104 LQTVNIKVK-MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKST 280 LQT + ++ + C C +RVK A++S V VN +K VTG + ++ +K T Sbjct: 2 LQTTLLALQGLSCMNCAQRVKAALESREDVHHAEVNVHYAK--VTGEADTHALIETIKQT 59 Query: 281 G 283 G Sbjct: 60 G 60
>ATCU2_RHIME (P58342) Copper-transporting ATPase 2 (EC 3.6.3.4)| Length = 827 Score = 35.0 bits (79), Expect = 0.12 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +2 Query: 74 AALKLRKRRPLQ-TVNIKVK-MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVE 247 A K+ K PL + N ++ M C C RRV+ A+ ++ GV + +VN + TV E Sbjct: 3 ALKKIEKAAPLPVSTNFGIEGMTCASCVRRVEKAITAVPGVASANVNLATERATVQFDGE 62 Query: 248 PS--KVLARVKSTG 283 P VL ++ G Sbjct: 63 PDTLAVLHAIEKAG 76
>CCS1_YEAST (P40202) Superoxide dismutase 1 copper chaperone| Length = 249 Score = 35.0 bits (79), Expect = 0.12 Identities = 14/56 (25%), Positives = 32/56 (57%) Frame = +2 Query: 125 VKMDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVA 292 + M CE C +K +K++ G+ +++ + + ++V V PS ++ +++ GK A Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68
>CADA2_LISMO (Q60048) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 711 Score = 34.3 bits (77), Expect = 0.20 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTG 238 + C C + + VK I GVT VN SK+TVTG Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG 47
>ATZN_SYNY3 (Q59998) Zinc-transporting ATPase (EC 3.6.3.5)| (Zn(2+)-translocating P-type ATPase) Length = 721 Score = 33.9 bits (76), Expect = 0.26 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +2 Query: 101 PLQTVNIKVK-MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVT 235 PL+T ++V MDC C+ +++ +++ ++GV SV ++TVT Sbjct: 6 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 51
>ATCU1_RHIME (P58341) Copper-transporting ATPase 1 (EC 3.6.3.4)| Length = 826 Score = 33.9 bits (76), Expect = 0.26 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVN--PKMSKVTVTGFVEPSKVLARVKSTG 283 M C C RRV+ A+ ++ GV + +VN + + V TG + VL ++ G Sbjct: 24 MTCASCVRRVEKAISAVPGVASATVNLATERASVQFTGAPDTGGVLLAIEKAG 76 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTV--TGFVEPSKVLARVKSTG 283 M C C RV+ A++++ GV SVN K TV V+ + + A V+ G Sbjct: 91 MTCASCVSRVEKALRTVPGVADASVNLATEKGTVRFVSGVDVAAIEAAVRDAG 143
>ATCU_SALTY (Q8ZR95) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 832 Score = 33.9 bits (76), Expect = 0.26 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVAE 295 M C C RV++A++S+ GVT VN V G + ++ V+ G AE Sbjct: 106 MSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGAE 160
>ATCU_SALTI (Q8Z8S4) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 832 Score = 33.9 bits (76), Expect = 0.26 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVAE 295 M C C RV++A++S+ GVT VN V G + ++ V+ G AE Sbjct: 106 MSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGAE 160
>ATZN_ECOLI (P37617) Lead, cadmium, zinc and mercury-transporting ATPase (EC| 3.6.3.3) (EC 3.6.3.5) Length = 732 Score = 33.1 bits (74), Expect = 0.44 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTV 232 MDC C R+V+NAV+ + GV V V K+ V Sbjct: 57 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVV 90
>MERA_SHEPU (Q54465) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)| Length = 557 Score = 33.1 bits (74), Expect = 0.44 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVT--GFVEPSKVLARVKSTGKVAE 295 M C C VK A+ +I GV V ++ + ++ T+T G V + ++ +++ G +A+ Sbjct: 9 MTCPSCVAHVKEALDAIEGVNKVEISYENARATITTNGGVSVTVLIGAIEALGYIAK 65
>PSBB_ANASP (P20093) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 509 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/73 (26%), Positives = 29/73 (39%) Frame = +2 Query: 254 KVLARVKSTGKVAEMWPYVPYSLTTYPYVGGAYDKKAPAGFVRGAPQAMADPGAPEVRYM 433 +V + V ++E W +P L Y YVG + A G R P D A + Sbjct: 287 RVQSSVAQGASLSEAWSQIPEKLAFYDYVG---NSPAKGGLFRTGPMVKGDGIAQSWQGH 343 Query: 434 NMFNDEDVNSCTI 472 +F D + T+ Sbjct: 344 GVFKDAEGRELTV 356
>CND3_YEAST (Q06680) Condensin complex subunit 3 (CAPG homolog)| Length = 1035 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -2 Query: 294 SATFPVLFTRASTLLGSTN-PVTVTLLILGFTDTAVTPRIDLTA 166 SAT + TR+S +L N P+T +LI DT +TP + TA Sbjct: 572 SATIVLCLTRSSYMLELVNTPLTENILIASLMDTLITPAVRNTA 615
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/38 (47%), Positives = 19/38 (50%) Frame = -1 Query: 301 PHLGHLPGALHPRQHLARLHEPRHRHLAHLGVH*HGRH 188 PH GH P A HP +H P H H H G H HG H Sbjct: 361 PH-GHHPHAHHPHEHDTHRQHP-HGHHPH-GHHPHGHH 395
>Y311_ENCCU (Q8SW76) Hypothetical protein ECU03_0110| Length = 267 Score = 30.4 bits (67), Expect = 2.9 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Frame = -2 Query: 288 TFPVLFTRASTLLG-STNPVTVTLLILGFTDTAVTPRIDLTAFLTLLSQPSQSIFTLMFT 112 T P L + LL S NP T + FTDTA+T IDL + + + ++ Sbjct: 135 TLPFLIISPTYLLSTSCNPTTGQIQ---FTDTAITALIDLIILSSYIIGITLTVLFRNRN 191 Query: 111 VCSGRLFLSLRAAFVSVML 55 VC F+ A+F+ ++L Sbjct: 192 VCCPFPFIFAFASFILILL 210
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 30.4 bits (67), Expect = 2.9 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 5/46 (10%) Frame = -1 Query: 310 HVGPHLGHLPGALH-----PRQHLARLHEPRHRHLAHLGVH*HGRH 188 H+G H H P H P H H P H H H H H H Sbjct: 165 HLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHH 210
>DEAD_MYCTU (Q11039) Cold-shock DEAD box protein A homolog (EC 3.6.1.-)| (ATP-dependent RNA helicase deaD homolog) Length = 563 Score = 30.0 bits (66), Expect = 3.7 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Frame = +2 Query: 185 GVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTG-KVAEMWP-YVPY--SLTTYPYVGGAY 352 G TA P +SK+ +T V + VL + +VAE + Y Y L P GG+ Sbjct: 62 GKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSS 121 Query: 353 DKKAPAGFVRGAPQAMADPG 412 AG RGA + PG Sbjct: 122 YAVQLAGLRRGAQVVVGTPG 141
>CADA1_LISMO (P58414) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 707 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKV 259 M C C + + VK++ GVT VN K++V G S++ Sbjct: 15 MSCTNCAGKFEKNVKNLEGVTDAKVNFGAGKISVYGETSISQI 57
>TRXR1_DROME (P91938) Thioredoxin reductase 1, mitochondrial precursor (EC| 1.8.1.9) (TrxR-1) Length = 596 Score = 29.6 bits (65), Expect = 4.9 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = +2 Query: 113 VNIKVKMDCEGCERRVKNAVKSIRGVTAVSVNPKMSKVT--VTGFVEPSKVLARVKSTGK 286 V+ K+K D + V+N +KS+ VT V + K + + FV+ +LA++KS + Sbjct: 193 VDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGER 252 Query: 287 --VAEMWPYVPYSLTTYPYVGGAYD 355 A+ + YP + GA + Sbjct: 253 TITAQTFVIAVGGRPRYPDIPGAVE 277
>EVPL_HUMAN (Q92817) Envoplakin (210 kDa paraneoplastic pemphigus antigen) (p210)| (210 kDa cornified envelope precursor protein) Length = 2033 Score = 29.6 bits (65), Expect = 4.9 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = +1 Query: 13 DQDHGRLGSPLRFVQHDRHKGSPQAQEEAATADGKHQGEDGL*GLREKGQERRQVDSGCD 192 DQ+ GRL LR ++ + + + Q QEE+ K + E R+K +R Q S + Sbjct: 1589 DQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESE------RQKAAQRGQELSRLE 1642 Query: 193 GRVSEPQDE 219 + +D+ Sbjct: 1643 AAILREKDQ 1651
>SKEL_DROME (Q9GPJ1) Protein skeletor| Length = 743 Score = 29.6 bits (65), Expect = 4.9 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = -1 Query: 304 GPHLGHLPGALHPRQHLARLHEPRHRHLAHLGVH*HGRHTPNRLDGVLDPSLAALTVHL 128 GPHL H P LH R H H+P+H H+ +H H T N P+LA T+ L Sbjct: 142 GPHLIHHPPHLH-RLH----HQPQHAPHPHVHLH-HHNLTANL------PALAQKTIGL 188
>IRA2_YEAST (P19158) Inhibitory regulator protein IRA2| Length = 3079 Score = 29.3 bits (64), Expect = 6.4 Identities = 19/71 (26%), Positives = 36/71 (50%) Frame = -2 Query: 333 G*VVSEYGT*GHISATFPVLFTRASTLLGSTNPVTVTLLILGFTDTAVTPRIDLTAFLTL 154 G +++EYGT H + P L + + GST+ ++T + DT + P L+ + Sbjct: 855 GTIINEYGTKKHFKGSSPSLCSTTRSRSGSTSQSSMTPVSPLGLDTDICPMNTLSLVGSS 914 Query: 153 LSQPSQSIFTL 121 S+ S ++ +L Sbjct: 915 TSRNSDNVNSL 925
>ASSY_METCA (Q609X7) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 408 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = +2 Query: 218 SKVTVTGFVEPSKVLARVKSTGKVAEMWPYVPYSLTTYPYVGGAYDKKAPAGFVR 382 S+ TV G V V G+ +E ++ T+ GAYD+K GF++ Sbjct: 337 SQATVNGVVRVKLYKGNVSVVGRKSESNSLFDMNIATFEDDRGAYDQKDAEGFIK 391
>THIG_CAMJR (Q5HU56) Thiazole biosynthesis protein thiG| Length = 258 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Frame = +2 Query: 266 RVKSTGKVAEMWPYVPYSLTTYPYVGGAYDKKAPAGFVR-----GAPQAMADPGAPEVRY 430 R +TG++A + Y+P ++T P GA + + R G + + + RY Sbjct: 50 RRANTGEIANILDYIPKNITLLPNTSGARNAEEALRIARLSRELGCGELIKIEVISDSRY 109 Query: 431 MNMFNDEDVNSCTIM 475 + N E + +C ++ Sbjct: 110 LLPDNYETIKACELL 124
>GYRA_MYCGA (P47719) DNA gyrase subunit A (EC 5.99.1.3)| Length = 846 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +2 Query: 149 ERRVKNAVKSIRGVTAVSVNPKMSKVTVTGFVEPSKVLARVKSTGKVAEM 298 E R+ N + +GV + V PK + T V ++ L + STGK+ + Sbjct: 736 EYRMTN--RGSKGVITIKVTPKTGNIINTQLVNGNEELLMISSTGKIVRV 783
>UBP1_YEAST (P25037) Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.1.2.15)| (Ubiquitin thioesterase 1) (Ubiquitin-specific-processing protease 1) (Deubiquitinating enzyme 1) Length = 809 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/62 (24%), Positives = 30/62 (48%) Frame = +1 Query: 13 DQDHGRLGSPLRFVQHDRHKGSPQAQEEAATADGKHQGEDGL*GLREKGQERRQVDSGCD 192 D++ G++ L +Q + + + QE+ + K E G +E+GQE+ + + D Sbjct: 740 DEETGKMKDDLEAIQSNNEEDDEKEQEQKGVQEPKESQEQGEGEEQEEGQEQMKFERTED 799 Query: 193 GR 198 R Sbjct: 800 HR 801
>NSBP1_HUMAN (P82970) Nucleosome-binding protein 1| Length = 282 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = +1 Query: 58 HDRHKGSPQAQEEAATADGKHQGEDGL*GLREKGQERRQVD---SGCDGRVSEPQDEQGD 228 +++ + + + ++ DGK GEDG +EKG++ ++ + DG+ +E E+GD Sbjct: 164 NEKGEDAKEKEDGKKGEDGKGNGEDG----KEKGEDEKEEEDRKETGDGKENEDGKEKGD 219
>MERA_THIFE (P17239) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)| Length = 547 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +2 Query: 131 MDCEGCERRVKNAVKSIRGV--TAVSVNPKMSKVTVTGFVEPSKVLARVKSTG 283 M C+GC V+ A++ + GV VS ++V + G V +++ V ++G Sbjct: 14 MTCDGCAAHVRKALEGVPGVREAQVSYPDATARVVLEGEVPMQRLIKAVVASG 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,283,292 Number of Sequences: 219361 Number of extensions: 1140527 Number of successful extensions: 4539 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4515 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
