ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 376 e-104
2RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 355 5e-98
3RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 353 1e-97
4RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 351 7e-97
5RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 351 9e-97
6RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 345 6e-95
7RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 344 8e-95
8RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 343 2e-94
9RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 342 4e-94
10RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 341 7e-94
11RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 340 2e-93
12RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 338 5e-93
13RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 337 1e-92
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 332 4e-91
15RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 331 7e-91
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 312 5e-85
17RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a... 250 2e-66
18RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a... 248 8e-66
19RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a... 38 0.022
20PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso... 37 0.049
21PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro... 35 0.14
22PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P... 35 0.14
23PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P... 35 0.14
24CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B ... 34 0.24
25PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P... 34 0.24
26PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6) 34 0.24
27RECA_IDILO (Q5QUB8) Protein recA (Recombinase A) 33 0.54
28PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog ... 33 0.54
29PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4) 33 0.54
30PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog ... 33 0.54
31CD48A_ARATH (P54609) Cell division control protein 48 homolog A ... 33 0.54
32PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ... 33 0.54
33PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso... 32 0.92
34CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ... 32 0.92
35PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7 32 0.92
36PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso... 32 1.2
37PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso... 32 1.2
38RECA_CHLTE (O52393) Protein recA (Recombinase A) 32 1.6
39YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.... 31 2.1
40YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.... 31 2.1
41TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h... 31 2.1
42FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-) 31 2.1
43FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-) 31 2.1
44FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-) 31 2.1
45FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-) 31 2.1
46FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-) 31 2.1
47MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1)... 31 2.1
48DTD_BURPS (Q63QX1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 31 2.7
49DTD_BURMA (Q62HB3) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 31 2.7
50PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) ... 31 2.7
51EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosin... 31 2.7
52FILA_HUMAN (P20930) Filaggrin 31 2.7
53EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosin... 31 2.7
54TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER... 31 2.7
55TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER... 31 2.7
56TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T... 31 2.7
57TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T... 31 2.7
58EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-... 30 3.5
59PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog ... 30 3.5
60SCN1_LOLBL (Q05973) Sodium channel protein I, brain 30 3.5
61PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein) 30 3.5
62PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 prot... 30 3.5
63PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 prot... 30 3.5
64PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 prot... 30 3.5
65EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosin... 30 3.5
66YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC... 30 3.5
67PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4 30 3.5
68AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-) 30 4.6
69PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1... 30 4.6
70PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (C... 30 4.6
71PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1... 30 6.0
72PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1... 30 6.0
73CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h... 30 6.0
74RL3_RHOPA (P60456) 50S ribosomal protein L3 (RRP-L3) 30 6.0
75PEX6_DEBHA (Q6BS73) Peroxisomal biogenesis factor 6 (Peroxin-6) 30 6.0
76FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.2... 30 6.0
77FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.2... 30 6.0
78FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.2... 30 6.0
79FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.2... 30 6.0
80CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog 30 6.0
81PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog 29 7.8
82CLPX_BIFLO (Q8G5R1) ATP-dependent Clp protease ATP-binding subun... 29 7.8
83PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Proteas... 29 7.8
84PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Proteas... 29 7.8
85LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA 29 7.8
86CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val... 29 7.8 
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  376 bits (966), Expect = e-104
 Identities = 184/185 (99%), Positives = 184/185 (99%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 183 ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIADAPTNVQLPGMYNK ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR
Sbjct: 243 TLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 302

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR
Sbjct: 303 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 362

Query: 542 LVNSR 556
           LVNSR
Sbjct: 363 LVNSR 367
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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  355 bits (911), Expect = 5e-98
 Identities = 171/185 (92%), Positives = 179/185 (96%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGN GEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 184 ELESGN-GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR
Sbjct: 243 TLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 302

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           +GVCKGIF+TDNV DE +VKIVD+FPGQSIDFFGALRARVYDDEVRKWV  TG+ENIGKR
Sbjct: 303 VGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKR 362

Query: 542 LVNSR 556
           LVNSR
Sbjct: 363 LVNSR 367
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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  353 bits (907), Expect = 1e-97
 Identities = 171/185 (92%), Positives = 179/185 (96%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGN GEPAKLIRQRYREAAD+I KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 181 ELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 239

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIADAPTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 240 TLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 299

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TDNV DE+VV++VDTFPGQSIDFFGALRARVYDDEVRKWVG  G+ENI KR
Sbjct: 300 IGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKR 359

Query: 542 LVNSR 556
           LVNSR
Sbjct: 360 LVNSR 364
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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  351 bits (901), Expect = 7e-97
 Identities = 166/185 (89%), Positives = 178/185 (96%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 193 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 252

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 253 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 312

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TDNV+D+ +VK+VDTFPGQSIDFFGALRARVY DEVRKWV   G++ IGK+
Sbjct: 313 IGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKK 372

Query: 542 LVNSR 556
           LVNS+
Sbjct: 373 LVNSK 377
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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  351 bits (900), Expect = 9e-97
 Identities = 166/185 (89%), Positives = 177/185 (95%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 193 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 252

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 253 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 312

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TDNV +E +VK+VD FPGQSIDFFGALRARVYDDEVRKWV   G++ IGK+
Sbjct: 313 IGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKK 372

Query: 542 LVNSR 556
           LVNS+
Sbjct: 373 LVNSK 377
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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  345 bits (884), Expect = 6e-95
 Identities = 165/185 (89%), Positives = 178/185 (96%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAA++I+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 192 ELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 251

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 252 TLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TDNV +E+VVKIVD+FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG++
Sbjct: 312 IGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEK 371

Query: 542 LVNSR 556
           L+NSR
Sbjct: 372 LLNSR 376
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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  344 bits (883), Expect = 8e-95
 Identities = 163/185 (88%), Positives = 177/185 (95%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 189 ELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNA 248

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 249 TLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 308

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TD V +E VV++VDTFPGQSIDFFGALRARVYDDEVR+WV  TG+ENI ++
Sbjct: 309 IGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARK 368

Query: 542 LVNSR 556
           LVNS+
Sbjct: 369 LVNSK 373
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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  343 bits (879), Expect = 2e-94
 Identities = 165/185 (89%), Positives = 174/185 (94%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 193 ELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 252

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKEEN RVPI+ TGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 253 TLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 312

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TD + DE +V +VD FPGQSIDFFGALRARVYDDEVRK+V S G+E IGKR
Sbjct: 313 IGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKR 372

Query: 542 LVNSR 556
           LVNSR
Sbjct: 373 LVNSR 377
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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  342 bits (877), Expect = 4e-94
 Identities = 163/184 (88%), Positives = 176/184 (95%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAA++I+KG +CCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 197 ELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNA 256

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 257 TLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 316

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TDNV +E+V+KIVDTFPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +
Sbjct: 317 IGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDK 376

Query: 542 LVNS 553
           L+NS
Sbjct: 377 LLNS 380
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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  341 bits (875), Expect = 7e-94
 Identities = 161/185 (87%), Positives = 177/185 (95%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+I+KGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNA
Sbjct: 193 ELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNA 252

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 253 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 312

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVC GIF++DNV+ E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+   G+++IGK+
Sbjct: 313 IGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKK 372

Query: 542 LVNSR 556
           LVNS+
Sbjct: 373 LVNSK 377
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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  340 bits (872), Expect = 2e-93
 Identities = 161/185 (87%), Positives = 173/185 (93%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGR+GGTTQYTVNNQMVNA
Sbjct: 190 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNA 249

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTR+DR
Sbjct: 250 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDR 309

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IG+C GIF+TD V  E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW    G+E IG+ 
Sbjct: 310 IGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRN 369

Query: 542 LVNSR 556
           LVNS+
Sbjct: 370 LVNSK 374
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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  338 bits (868), Expect = 5e-93
 Identities = 163/184 (88%), Positives = 172/184 (93%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAA++I+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 197 ELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 256

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 257 TLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 316

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVC GIF+TDNV  E VVKIVD FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +
Sbjct: 317 IGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDK 376

Query: 542 LVNS 553
           L+NS
Sbjct: 377 LLNS 380
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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  337 bits (865), Expect = 1e-92
 Identities = 159/185 (85%), Positives = 172/185 (92%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNA
Sbjct: 195 ELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNA 254

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKEEN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR
Sbjct: 255 TLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 314

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           +GVCKGIF+TD V +E + K+VDTFPGQSIDFFGALRARVYDDEVRKW+   G++  GK+
Sbjct: 315 VGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKK 374

Query: 542 LVNSR 556
           LVNS+
Sbjct: 375 LVNSK 379
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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  332 bits (851), Expect = 4e-91
 Identities = 155/185 (83%), Positives = 174/185 (94%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNA
Sbjct: 197 ELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNA 256

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNKE+N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 257 TLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 316

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVCKGIF+TD V ++ +V++VD  PGQSIDFFGALRARVYDDEVRKW+   G++++GK+
Sbjct: 317 IGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKK 376

Query: 542 LVNSR 556
           LVNS+
Sbjct: 377 LVNSK 381
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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  331 bits (849), Expect = 7e-91
 Identities = 158/185 (85%), Positives = 171/185 (92%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGGTTQYTVNNQMVNA
Sbjct: 191 ELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNA 250

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPGMYNK++N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 251 TLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 310

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVC GIF+TD V  E VVK+VD FPGQSIDFFGALRARVY DEVRKWV S G++N+GK+
Sbjct: 311 IGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKK 370

Query: 542 LVNSR 556
           LVNS+
Sbjct: 371 LVNSK 375
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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  312 bits (799), Expect = 5e-85
 Identities = 150/185 (81%), Positives = 164/185 (88%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           ELESGNAGEPAKLIR RYREA+D+IKKG+MC LFINDLDAGAGRMG TTQYTVNNQMVNA
Sbjct: 166 ELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNA 225

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 361
           TLMNIAD PTNVQLPG+Y  EE PRVPIV TGNDFSTLYAPLIRDGRMEK+YW PTR+DR
Sbjct: 226 TLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDR 285

Query: 362 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKR 541
           IGVC GIFQ DNV    V  +VDTFPGQSIDFFGALRARVYDD VR+W+  TG++ IG++
Sbjct: 286 IGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQ 345

Query: 542 LVNSR 556
           LVN+R
Sbjct: 346 LVNAR 350
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>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  250 bits (638), Expect = 2e-66
 Identities = 121/185 (65%), Positives = 147/185 (79%), Gaps = 1/185 (0%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 178
           ELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VN
Sbjct: 65  ELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVN 124

Query: 179 ATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 358
           ATLMNIAD PT+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RD+
Sbjct: 125 ATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDE 184

Query: 359 RIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGK 538
           ++G+  GIF  D +S   V K+VD+FP QSIDFF ALR+R+YD+++R ++   G EN+  
Sbjct: 185 KVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSL 244

Query: 539 RLVNS 553
           R+VNS
Sbjct: 245 RVVNS 249
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>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  248 bits (633), Expect = 8e-66
 Identities = 121/185 (65%), Positives = 145/185 (78%), Gaps = 1/185 (0%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 178
           ELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VN
Sbjct: 65  ELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVN 124

Query: 179 ATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 358
           ATLMNIAD PT+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RDD
Sbjct: 125 ATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDD 184

Query: 359 RIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGK 538
           ++G+  GIF  D +S   + ++VDTFP QSIDFF ALR+R+YD ++R ++   G E I  
Sbjct: 185 KVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISL 244

Query: 539 RLVNS 553
           R+VNS
Sbjct: 245 RVVNS 249
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>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 422 IVDTFPGQSIDFFGALR 472
           +VDTFPGQSIDFFGALR
Sbjct: 1   LVDTFPGQSIDFFGALR 17
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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           EL     GE AKL+R  ++ A    K+   C +FI+++DA A +   T   T  ++ V  
Sbjct: 217 ELVKKFIGEGAKLVRDVFKLA----KEKSPCIIFIDEIDAVASKR--TESLTGGDREVQR 270

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKF--YWAPTRD 355
           TLM +        L  M   +    V I+   N    L   ++R GR ++      P  D
Sbjct: 271 TLMQL--------LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDED 322

Query: 356 DRIGVCKGIFQTDN---VSDESVVKIVDTFPGQSI 451
            R+ + K   +  N   V    V KI +   G  +
Sbjct: 323 GRLEILKIHTEKMNLKGVDLREVAKIAENMVGADL 357
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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QM 172
           EL     G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + 
Sbjct: 254 ELIQKYLGDGPKLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGERE 304

Query: 173 VNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
           +  T++ + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  
Sbjct: 305 IQRTMLELLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356

Query: 353 DDRIGVCKGIFQ--------TDNVSDESVVKIVDTFPGQSI 451
           D++    K IFQ         D+V+ + ++   D   G  I
Sbjct: 357 DEK--TKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QM 172
           EL     G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + 
Sbjct: 254 ELIQKYLGDGPKLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGERE 304

Query: 173 VNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
           +  T++ + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  
Sbjct: 305 IQRTMLELLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356

Query: 353 DDRIGVCKGIFQ--------TDNVSDESVVKIVDTFPGQSI 451
           D++    K IFQ         D+V+ + ++   D   G  I
Sbjct: 357 DEK--TKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QM 172
           EL     G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + 
Sbjct: 254 ELIQKYLGDGPKLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGERE 304

Query: 173 VNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
           +  T++ + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  
Sbjct: 305 IQRTMLELLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356

Query: 353 DDRIGVCKGIFQ--------TDNVSDESVVKIVDTFPGQSI 451
           D++    K IFQ         D+V+ + ++   D   G  I
Sbjct: 357 DEK--TKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
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>CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B (AtCDC48b)|
          Length = 603

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
 Frame = +2

Query: 17  NAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 196
           +AGE  K++R+ + EA+      K   +FI+++D    R     +  V       TLM+ 
Sbjct: 96  HAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD- 154

Query: 197 ADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKF--YWAPTRDDRIGV 370
           ++ P++            PRV +V + N    +   L R GR +       P  +DR+ +
Sbjct: 155 SNKPSS----------SAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QM 172
           EL     G+  KL+R+ +R A    ++     +FI+++DA      GT +Y  N+   + 
Sbjct: 254 ELIQKYLGDGPKLVRELFRVA----EEHGPSIVFIDEIDAI-----GTKRYDSNSGGERE 304

Query: 173 VNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
           +  T++ + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  
Sbjct: 305 IQRTMLELLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356

Query: 353 DDRIGVCKGIFQ--------TDNVSDESVVKIVDTFPGQSI 451
           D++    K IFQ         D+V+ + ++   D   G  I
Sbjct: 357 DEK--TKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADI 395
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>PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1135

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
 Frame = +2

Query: 2    ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
            EL +   GE    +R+ +++A D     K C +F ++LD+ A + G        NQ  + 
Sbjct: 881  ELLNMYIGESEANVRRVFQKARD----AKPCVIFFDELDSVAPKRG--------NQGDSG 928

Query: 182  TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW---APTR 352
             +M+   +    +L GM   E    V +V   N    L   L+R GR +K  +   A T 
Sbjct: 929  GVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTH 988

Query: 353  DDRIGVCKGI---FQTDNVSDESVVKIVDTFPGQSIDFF 460
            + +  + + +   FQ D   D   +     F     DF+
Sbjct: 989  EKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFY 1027
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>RECA_IDILO (Q5QUB8) Protein recA (Recombinase A)|
          Length = 372

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYT 157
           E+   + G  A+L+ Q  R+    IKK    C+FIN +    G M G  + T
Sbjct: 157 EMGDSHVGLQARLMSQALRKLTSNIKKSNTMCIFINQIRMKIGVMFGNPETT 208
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>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 424

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
 Frame = +2

Query: 23  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 199
           G+ AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 247 GDGAKLVR----DAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 299

Query: 200 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK--FYWAPTRDDRIGVC 373
           +     QL G  + E   R+ ++   N    L   L+R GR+++   +  PT + R  + 
Sbjct: 300 N-----QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 351

Query: 374 KGIFQTDN----VSDESVVKIVDTFPGQSI 451
           +   +  N    V+ E + +  D F G  +
Sbjct: 352 QIHSRKMNVHPDVNFEELARSTDDFNGAQL 381
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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QM 172
           EL     G+  KL+R+ +R A +         +FI+++DA      GT +Y  N+   + 
Sbjct: 253 ELIQKYLGDGPKLVRELFRVAEEHAPS----IVFIDEIDAV-----GTKRYDSNSGGERE 303

Query: 173 VNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
           +  T++ + +     QL G  ++ +   V +++  N   TL   LIR GR+++    P  
Sbjct: 304 IQRTMLELLN-----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLP 355

Query: 353 DDR 361
           D++
Sbjct: 356 DEK 358
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>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 429

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +2

Query: 23  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 199
           G+ AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 252 GDGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 304

Query: 200 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           +     QL G  + E   R+ ++   N    L   L+R GR+++
Sbjct: 305 N-----QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDR 340
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>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDA-------GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           RE  D  ++   C LF ++LD+       G+G  GG     V NQ++  T M+  +A   
Sbjct: 563 REIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLL--TEMDGMNAKKT 620

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW--APTRDDRIGVCKGIFQ 388
           V + G  N+ +               + + L+R GR+++  +   P  D R+ + K   +
Sbjct: 621 VFIIGATNRPD--------------IIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALR 666

Query: 389 TDNVSDE----SVVKIVDTFPGQSI 451
              ++ +    ++ K    F G  I
Sbjct: 667 KSPIAKDVDIGALAKYTQGFSGADI 691
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>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
 Frame = +2

Query: 23  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 199
           G+ AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 246 GDGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 298

Query: 200 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK--FYWAPTRDDRIGVC 373
           +     QL G      + R+ ++   N    L   L+R GR+++   +  PT + R  + 
Sbjct: 299 N-----QLDGF---SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350

Query: 374 KGIFQTDNVSD----ESVVKIVDTFPGQSI 451
           +   +  NV+     E + +  D F G  +
Sbjct: 351 QIHSRKMNVNPDVNFEELARSTDDFNGAQL 380
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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
 Frame = +2

Query: 23  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 202
           GE A+L+R+ ++ A    K+     +FI++LDA A R   T   T  ++ V  T+M +  
Sbjct: 217 GEGARLVREVFQLA----KEKAPSIIFIDELDAIAARR--TNSDTSGDREVQRTMMQLL- 269

Query: 203 APTNVQLPGMYNKEENPRVPIVVTG--NDFSTLYAPLIRDGRMEKFYWA--PTRDDRIGV 370
                +L G      +PR  + V G  N    L   ++R GR ++      PT + RI +
Sbjct: 270 ----AELDGF-----DPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQI 320

Query: 371 CK 376
            K
Sbjct: 321 FK 322
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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 563 REIFDKARQSAPCVLFFDELDSIATQRGNSA----------GDAGGAADRVLNQLLTEMD 612

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW--APTRDDRIGVCKGIFQTDNVSDE 409
                  V I+   N    + + L+R GR+++  +   P  D R+ + K   +   V+ +
Sbjct: 613 GMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKD 672

Query: 410 ----SVVKIVDTFPGQSI 451
               ++ K    F G  I
Sbjct: 673 VDVTALAKYTQGFSGADI 690
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>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7|
          Length = 435

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 27/110 (24%), Positives = 51/110 (46%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           EL     GE A+++R+ +    +M +  K C +F +++DA  G      Q   N   V  
Sbjct: 246 ELVQKYVGEGARMVRELF----EMARTKKACLIFFDEIDAVGGARFDDGQGGDNE--VQR 299

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           T++ + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 300 TMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 341
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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 31/115 (26%), Positives = 55/115 (47%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           EL     G+ +KL+R+ +    +M +K     +FI++LD+ A R    T  T  ++ V  
Sbjct: 228 ELVQKYIGDGSKLVREIF----EMARKKAPSIIFIDELDSIAARRLNET--TGADREVQR 281

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 346
           TLM +       ++ G ++K +N R  I+   N    L   ++R GR ++    P
Sbjct: 282 TLMQLL-----AEMDG-FDKRKNIR--IIAATNRPDVLDPAILRPGRFDRLVHVP 328
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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 31/115 (26%), Positives = 55/115 (47%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           EL     G+ +KL+R+ +    +M +K     +FI++LD+ A R    T  T  ++ V  
Sbjct: 228 ELVQKYIGDGSKLVREIF----EMARKKAPSIIFIDELDSIAARRLNET--TGADREVQR 281

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 346
           TLM +       ++ G ++K +N R  I+   N    L   ++R GR ++    P
Sbjct: 282 TLMQLL-----AEMDG-FDKRKNIR--IIAATNRPDVLDPAILRPGRFDRLVHVP 328
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>RECA_CHLTE (O52393) Protein recA (Recombinase A)|
          Length = 346

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 169
           E+     G  A+L+ Q  R+    I K    CLFIN L    G M G+ + T   +
Sbjct: 171 EMGDSVVGLQARLMSQALRKLTGAISKSSSVCLFINQLRDKIGVMYGSPETTTGGK 226
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>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 31/118 (26%), Positives = 45/118 (38%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           E +    G  A  IR  +REA    K    C +FI++LD+  G+   +  +  + Q +N 
Sbjct: 349 EFDEMFVGVGASRIRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQ 404

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 355
            L              M   + N  V I+   N    L   LIR GR +     P  D
Sbjct: 405 LLAE------------MDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPD 450
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>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4) (Presenilin-associated metalloprotease)
           (PAMP)
          Length = 773

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 31/118 (26%), Positives = 45/118 (38%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
           E +    G  A  IR  +REA    K    C +FI++LD+  G+   +  +  + Q +N 
Sbjct: 407 EFDEMFVGVGASRIRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQ 462

Query: 182 TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 355
            L              M   + N  V I+   N    L   LIR GR +     P  D
Sbjct: 463 LLAE------------MDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPD 508
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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDA-------GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R+  D  +    C LF ++LD+       GAG  GG     V NQ++  T M+  +A  N
Sbjct: 566 RDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVL--TEMDGMNAKKN 623

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 307
           V + G  N+ +     ++  G     +Y PL
Sbjct: 624 VFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654
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>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
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>MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1) (Protein nM15)|
          Length = 529

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = -2

Query: 368 HRYGRHGWEPSRTSPYDHHGSEEXXXXXXXXXXXRWAHGGSPPCCTCQGAARWWGHR--R 195
           H    H W+  R  P+++    +            W H  +P     +G + W G    R
Sbjct: 181 HTLAFHDWQGPR--PWENLNLSDWEVQSPIQVSGDWEHPNTP-----RGLSGWEGPSTSR 233

Query: 194 CSSGWRSPSGC*RCTAWFRPS 132
             SGW  PS     +AW  PS
Sbjct: 234 ILSGWEGPSASWALSAWEGPS 254
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>DTD_BURPS (Q63QX1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +2

Query: 83  GKMCCLFINDLDAGAGRMGG---TTQYTV---NNQMVNATLMNIADAPTNVQLPGMYNKE 244
           GKM  L +++LD GAGR GG    +Q+T+    N  +  +    A      +L   + + 
Sbjct: 60  GKMN-LPVSNLD-GAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRR 117

Query: 245 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
              R PIV TG   + +   L+ DG +   +W  TR
Sbjct: 118 ARERHPIVATGEFGADMQVSLVNDGPVT--FWLQTR 151
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>DTD_BURMA (Q62HB3) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +2

Query: 83  GKMCCLFINDLDAGAGRMGG---TTQYTV---NNQMVNATLMNIADAPTNVQLPGMYNKE 244
           GKM  L +++LD GAGR GG    +Q+T+    N  +  +    A      +L   + + 
Sbjct: 60  GKMN-LPVSNLD-GAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRR 117

Query: 245 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
              R PIV TG   + +   L+ DG +   +W  TR
Sbjct: 118 ARERHPIVATGEFGADMQVSLVNDGPVT--FWLQTR 151
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>PEX6_PICPA (P33289) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome|
            biosynthesis protein PAS5)
          Length = 1165

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 30/118 (25%), Positives = 50/118 (42%)
 Frame = +2

Query: 2    ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
            EL +   GE    +R+ ++ A D     K C +F ++LD+ A + G        NQ  + 
Sbjct: 887  ELLNMYIGESEANVRKVFQRARD----AKPCVVFFDELDSVAPKRG--------NQGDSE 934

Query: 182  TLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 355
             +M+   +    +L GM   +    V +V   N    L   L+R GR +K  +    D
Sbjct: 935  GVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSD 992
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>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (HEP)
          Length = 1006

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 254 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 129
           GGSPP   C G  +W    G  RC  G++   G   C A  R  Y
Sbjct: 263 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 307
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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +1

Query: 118  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 243
            RW G   RNH  +   Q  DG RHP  H   R  H  +A    Q G
Sbjct: 3554 RWSGSASRNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSRQSG 3599



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +1

Query: 118  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 243
            RW G   RNH  +   Q  DG RHP  H+  R  H  +A    Q G
Sbjct: 2906 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSG 2951



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +1

Query: 118  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 243
            RW G   RNH  +   Q  DG RHP  H+  R  H  +A    Q G
Sbjct: 2582 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSG 2627



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +1

Query: 118  RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 243
            RW G   RNH  +   Q  DG RHP  H   R  H  +A    Q G
Sbjct: 1933 RWSGSASRNHLGSAWEQSRDGSRHPGSHHEDRAGHGHSADSSRQSG 1978



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 118 RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAA 222
           RW G   RNH  +   Q  DG RHP  H   R  H  +A
Sbjct: 636 RWSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSA 674
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>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1005

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 254 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 129
           GGSPP   C G  +W    G  RC  G++   G   C A  R  Y
Sbjct: 262 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 306
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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 406
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 407 ---ESVVKIVDTFPGQSI 451
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 406
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 407 ---ESVVKIVDTFPGQSI 451
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 406
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 407 ---ESVVKIVDTFPGQSI 451
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 406
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 407 ---ESVVKIVDTFPGQSI 451
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
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>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1013

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -2

Query: 254 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 129
           GGSPP   C G  RW    G  RC  G +   G   C A    SY
Sbjct: 272 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 316
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>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 419

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
 Frame = +2

Query: 23  GEPAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 199
           G+ AKL+R  +  A    K+   C +FI+++DA G  R          ++ V  T++ + 
Sbjct: 242 GDGAKLVRDAFLLA----KEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELL 294

Query: 200 DAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           +     QL G      + R+ ++   N    L   L+R GR+++
Sbjct: 295 N-----QLDGF---SSDDRIKVIAATNRADILDPALMRSGRLDR 330
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>SCN1_LOLBL (Q05973) Sodium channel protein I, brain|
          Length = 1522

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = -1

Query: 255 RGFSSLLYMPGSCTLVGASAMFIRVAFTIWLLTVYCVVPPILPAPASRSLMKRQHILPFL 76
           R   +L  +PG  T+V A    +R+  ++ +L ++C+            +  +  +  F 
Sbjct: 152 RALRTLSIIPGLKTMVNALLRALRMLISVLILILFCLW-----------IFSQAGVQLF- 199

Query: 75  IMSAASRYRCLMSLAGSPAF 16
               A R++C++ + GSPAF
Sbjct: 200 --GGALRHKCVLQIHGSPAF 217
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>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNN 166
           EL     GE A+++R+ +    +M +  K C +F +++DA  G       GG  +     
Sbjct: 243 ELVQKYVGEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE----- 293

Query: 167 QMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
             V  T++ + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 294 --VQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 338
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>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNN 166
           EL     GE A+++R+ +    +M +  K C +F +++DA  G       GG  +     
Sbjct: 243 ELVQKYVGEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE----- 293

Query: 167 QMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
             V  T++ + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 294 --VQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 338
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>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNN 166
           EL     GE A+++R+ +    +M +  K C +F +++DA  G       GG  +     
Sbjct: 243 ELVQKYVGEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE----- 293

Query: 167 QMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
             V  T++ + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 294 --VQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 338
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>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 433

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNN 166
           EL     GE A+++R+ +    +M +  K C +F +++DA  G       GG  +     
Sbjct: 244 ELVQKYVGEGARMVRELF----EMARTKKACLIFFDEIDAIGGARFDDGAGGDNE----- 294

Query: 167 QMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
             V  T++ + +     QL G    +    + +++  N   TL   L+R GR+++
Sbjct: 295 --VQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALMRPGRLDR 339
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>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (MEP)
          Length = 1014

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -2

Query: 254 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 129
           GGSPP   C G  RW    G  RC  G +   G   C A    SY
Sbjct: 273 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 317
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>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 505 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 380
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44
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>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QM 172
           EL     G+  K++R+ +R A    ++     +FI+++DA      GT +Y  N+   + 
Sbjct: 257 ELIQKYLGDGPKMVRELFRVA----EENAPSIVFIDEIDAV-----GTKRYDSNSGGERE 307

Query: 173 VNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 352
           +  T++ + +     QL G  ++ +   V +++  N   +L   LIR GR+++    P  
Sbjct: 308 IQRTMLELLN-----QLDGFDSRGD---VKVLMATNRIESLDPALIRPGRIDRKIEFPLP 359

Query: 353 DDR 361
           D++
Sbjct: 360 DEK 362
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>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQY--TVNNQMVNATLMNIADAP 208
           R R+   M +K   C LFI+++DA     G G +GG ++   T+N  +V    M+  ++ 
Sbjct: 254 RVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVE---MDGFNSS 310

Query: 209 TNV 217
           TNV
Sbjct: 311 TNV 313
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>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 418 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 284
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 283 IV 278
           I+
Sbjct: 585 IL 586
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>PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (CIM5 protein)|
           (TAT-binding homolog 3)
          Length = 467

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNN 166
           EL     GE A+++R+ +    +M +  K C +F +++DA  G       GG  +     
Sbjct: 278 ELVQKYVGEGARMVRELF----EMARTKKACIIFFDEIDAVGGARFDDGAGGDNE----- 328

Query: 167 QMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
             V  T++ +       QL G    +    + ++   N  +TL   L+R GR+++
Sbjct: 329 --VQRTMLELI-----TQLDGF---DPRGNIKVMFATNRPNTLDPALLRPGRIDR 373
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>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 418 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 284
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 283 IV 278
           I+
Sbjct: 585 IL 586
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>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 418 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 284
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 283 IV 278
           I+
Sbjct: 585 IL 586
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>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 6/138 (4%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGNSV----------GDAGGAADRVLNQLLTEMD 613

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSDE 409
                  V I+   N    +   L+R GR+++  + P  D+  R  + K   +   V+ +
Sbjct: 614 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKD 673

Query: 410 ----SVVKIVDTFPGQSI 451
               ++ K    F G  I
Sbjct: 674 VDLRALAKYTQGFSGADI 691
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>RL3_RHOPA (P60456) 50S ribosomal protein L3 (RRP-L3)|
          Length = 241

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 15/159 (9%)
 Frame = +2

Query: 125 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAP 304
           A ++G T  +T   + +  T++ +     N Q+ G   KE+N  V + V      T+Y P
Sbjct: 7   AQKVGMTRVFTEAGEHIPVTVLKLG----NCQVLGHRTKEKNGYVALQVGSGSRKTVYMP 62

Query: 305 LIRDGRMEKFYWAPTR--------DDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSID-- 454
               G+       P R        +D +       Q D+      V +  T  G+     
Sbjct: 63  KAERGQFAAAKVEPKRKVEEFRVSEDALLPVGAEIQADHFVVGQFVDVTGTSTGKGFAGG 122

Query: 455 ----FFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR 556
                FG LRA        + +GST G ++ GK   N +
Sbjct: 123 MKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKK 161
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>PEX6_DEBHA (Q6BS73) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1198

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
 Frame = +2

Query: 2    ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 181
            EL +   GE    +R+ +++A D     K C +F ++LD+ A + G        NQ  + 
Sbjct: 907  ELLNMYIGESEANVRRVFQKARD----AKPCVIFFDELDSVAPKRG--------NQGDSG 954

Query: 182  TLMNIADAPTNVQLPGMYNKEENPRVPIVVTG--NDFSTLYAPLIRDGRMEKFYWAPTRD 355
             +M+   +    +L GM    E     + V G  N    L   L+R GR +K  +    D
Sbjct: 955  GVMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISD 1014
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>FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 679

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 246 RVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQLL--------- 293

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G      N  + I+   N    L   L+R GR ++
Sbjct: 294 VEMDGF---SANEGIIIIAATNRADILDPALLRPGRFDR 329
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>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  K+   C +FI+++DA     G G  GG  +     Q +N  L         
Sbjct: 235 RVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDE---REQTLNQML--------- 282

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  V I+   N    L   L+R GR ++
Sbjct: 283 VEMDGF---EANEGVVIIAATNRPDVLDRALLRPGRFDR 318
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>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  K+   C +FI+++DA     G G  GG  +     Q +N  L         
Sbjct: 235 RVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDE---REQTLNQML--------- 282

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G    E N  V I+   N    L   L+R GR ++
Sbjct: 283 VEMDGF---EANEGVVIIAATNRPDVLDRALLRPGRFDR 318
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>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +2

Query: 50  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 214
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 241 RVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQLL--------- 288

Query: 215 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
           V++ G      N  + I+   N    L   L+R GR ++
Sbjct: 289 VEMDGF---SANEGIIIIAATNRADILDPALLRPGRFDR 324
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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/101 (23%), Positives = 40/101 (39%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A + G +          +      AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGSS----------SGDAGGAADRVLNQLLTEMD 613

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 358
                  V I+   N    +   L+R GR+++  + P  D+
Sbjct: 614 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654
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>PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog|
          Length = 438

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
 Frame = +2

Query: 2   ELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGR-----MGGTTQYTVNN 166
           EL     GE A+++R+ +    +M +  K C +F +++DA  G       GG  +     
Sbjct: 248 ELVQKYVGEGARMVRELF----EMARTKKACIIFFDEIDAIGGARFDDGAGGDNE----- 298

Query: 167 QMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 331
             V  T++ +       QL G    +    + ++   N  +TL   L+R GR+++
Sbjct: 299 --VQRTMLELI-----TQLDGF---DPRGNIKVLFATNRPNTLDEALMRPGRIDR 343
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>CLPX_BIFLO (Q8G5R1) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 472

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +2

Query: 8   ESGNAGEPAKLIRQRYREAAD-MIKKGKMCCLFINDLDAGAGRMGGTTQYT--VNNQMVN 178
           E+G  G+  + + QR  +AAD  + + +   ++I+++D  A + G  T  T  V+ + V 
Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQ 244

Query: 179 ATLMNIADAP-TNVQLPGMYNKEE 247
             L+ I +    +V L G    +E
Sbjct: 245 QALLKILEGTIASVPLEGTRKHKE 268
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>PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 388 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 278
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369
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>PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 388 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 278
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369
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>LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA|
          Length = 616

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
 Frame = -3

Query: 541 PLANVLDSGRADP------LAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDI---VG 389
           P+ N +D   ADP      LA LI   P      +V+G +  GVDDL DR+V +I   VG
Sbjct: 142 PVLNKIDLPAADPDKYAAELAGLIGGKPG--DVLRVSGKTGVGVDDLLDRVVQEIPAPVG 199

Query: 388 LEDTLA 371
             D  A
Sbjct: 200 AADAPA 205
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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 24/101 (23%), Positives = 39/101 (38%)
 Frame = +2

Query: 56  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 235
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGSSV----------GDAGGAADRVLNQLLTEMD 613

Query: 236 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 358
                  V I+   N    +   L+R GR+++  + P  D+
Sbjct: 614 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,185,598
Number of Sequences: 219361
Number of extensions: 1848065
Number of successful extensions: 5882
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 5620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5873
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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