ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal16n03 |
|---|---|
| Clone Library Name | barley_pub |
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 6 PPPLRFLSTALPDPRPPPVSSTSAAKEPVLG 98 PPP R S + P P PPP+ + KE G Sbjct: 871 PPPKRLSSVSGPSPEPPPLDGSPGPKEGATG 901
>COBQ_HALSA (Q9HPL5) Probable cobyric acid synthase| Length = 512 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +3 Query: 30 TALPDPRPPPVSSTSAAKEPVLGSYL 107 T +PD P PV SAA+ VLG+YL Sbjct: 426 TTVPDGVPQPVGPASAARGRVLGTYL 451
>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)| Length = 409 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 9 PPLRFLSTALPDPRPPPVSSTSAAKEPVLGSYLLLPDYALRRTDS 143 PP R S A P P PPP+S P++ + + LP DS Sbjct: 95 PPRRMASPAAPSPAPPPIS-------PIIKNAISLPQLNQATYDS 132
>CSPG4_MOUSE (Q8VHY0) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (AN2 proteoglycan) Length = 2327 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +3 Query: 12 PLRFLSTALPDPRPPPVSSTSAAKEPVLGSYLLLPDYALRRTDS 143 P+ F T LP PPV +T+ + G+ + +P ALR TD+ Sbjct: 1464 PVAFTITILPVNDQPPVLTTNTGLQIWEGAIVPIPPEALRGTDN 1507
>FL1_TOBAC (Q40504) Floricaula/leafy homolog 1 (NFL1)| Length = 413 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 3 LPPPLRFLSTALPDPRPPPV 62 +PPP R L A+ P PPPV Sbjct: 19 MPPPTRLLEAAVAPPPPPPV 38
>TRADD_HUMAN (Q15628) Tumor necrosis factor receptor type 1-associated DEATH| domain protein (TNFR1-associated DEATH domain protein) (TNFRSF1A-associated via death domain) Length = 312 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 3 LPPPLRFLSTALPDPRPPPVSSTSAAKEPVLGSYLLLPD 119 L PP+ LS P P PPP + +PV+ L L D Sbjct: 180 LQPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKD 218
>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)| [Contains: Capsid protein VP24 (EC 3.4.21.97) (Assemblin) (Protease); Capsid protein VP22A; UL26.5 protein; C-terminal peptide] Length = 635 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +3 Query: 24 LSTALPDPRPPPVSSTSAAKEPVLGSYLLLP 116 LS LP P P S T A P GSYL +P Sbjct: 300 LSPVLPPMNPVPTSGTPAPAPPGDGSYLWIP 330
>PYRF_HAEIN (P43812) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 230 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = -3 Query: 380 APFLVELLLQLDVEAGEIDLVGSHIVAAPQAPGPLEFHLRQITGAGRHLCTRPKVEVLRN 201 AP L+ + + +E ++DL+ I A+P HL Q G +C+ +VE+LRN Sbjct: 109 APLLIAVTVLTSME--DLDLLQIGINASPMEQVLRLAHLTQRAGLDGVVCSPQEVEILRN 166
>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A| Length = 264 Score = 28.9 bits (63), Expect = 5.1 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = -3 Query: 353 QLDVEAGEIDLVGSHIVAAPQAPGPLEFHLRQITGAGRHLCTRPKVEVLRNCAASPTTRD 174 Q DV +DL S+ + P L H+RQ++G + RP S TT D Sbjct: 90 QEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSF-----RSATTVD 144 Query: 173 SATKN 159 KN Sbjct: 145 GKPKN 149
>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A| Length = 264 Score = 28.9 bits (63), Expect = 5.1 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = -3 Query: 353 QLDVEAGEIDLVGSHIVAAPQAPGPLEFHLRQITGAGRHLCTRPKVEVLRNCAASPTTRD 174 Q DV +DL S+ + P L H+RQ++G + RP S TT D Sbjct: 90 QEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSF-----RSATTVD 144 Query: 173 SATKN 159 KN Sbjct: 145 GKPKN 149
>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha) Length = 439 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 6 PPPLRFLSTALPDPRPPPVSSTSAAKEPVLGSY 104 P PL AL +PRP P+ A +PV G+Y Sbjct: 214 PFPLPAAHAALHNPRPGPLLGAPAPPQPVPGAY 246
>FX4L1_HUMAN (Q9NU39) Forkhead box protein D4-like 1| Length = 408 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 6 PPPLRFLSTALPDPRPPPVSSTSAAKEPVLGSY 104 P PL AL +PRP P+ A +PV G+Y Sbjct: 217 PFPLPAAHAALHNPRPGPLLGAPALPQPVPGAY 249
>SP0A_BACCE (P52930) Stage 0 sporulation protein A (Fragment)| Length = 150 Score = 28.9 bits (63), Expect = 5.1 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = -3 Query: 353 QLDVEAGEIDLVGSHIVAAPQAPGPLEFHLRQITGAGRHLCTRPKVEVLRNCAASPTTRD 174 Q DV +DL S+ + P L H+RQ++G + RP S TT D Sbjct: 26 QEDVTKKAVDLGASYFILKPFDMENLPSHIRQVSGKANTMIKRPLPSF-----RSATTVD 80 Query: 173 SATKN 159 KN Sbjct: 81 GKPKN 85
>TACT_HUMAN (P40200) T-cell surface protein tactile precursor (CD96 antigen)| Length = 569 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +3 Query: 9 PPLRFLSTALPDPRPPPVSSTSAAKEPVLGSYLLLPDYALR 131 PPL + L D +P P SS S A+ P S L+ ALR Sbjct: 371 PPLSVTESTL-DTQPSPASSVSPARYPATSSVTLVDVSALR 410
>SMN_CANFA (O02771) Survival motor neuron protein| Length = 287 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 8/43 (18%) Frame = +3 Query: 6 PPPLRFLSTALPD--------PRPPPVSSTSAAKEPVLGSYLL 110 PPP FLS LP P PPP+ S LGS L+ Sbjct: 217 PPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLI 259
>SMN_BOVIN (O18870) Survival motor neuron protein| Length = 287 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 8/43 (18%) Frame = +3 Query: 6 PPPLRFLSTALPD--------PRPPPVSSTSAAKEPVLGSYLL 110 PPP FLS LP P PPP+ S LGS L+ Sbjct: 217 PPPPHFLSRWLPPFPAGPPMIPPPPPICPDSLDDADALGSMLI 259
>VP61_NPVOP (O10270) 61 kDa protein homolog| Length = 474 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +3 Query: 6 PPPLRFLSTALPDPRPPP 59 PPP+ L+T++P P PPP Sbjct: 300 PPPMVDLATSMPPPPPPP 317
>UBA3_BRARE (Q7ZVX6) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 462 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/49 (32%), Positives = 19/49 (38%) Frame = +3 Query: 93 LGSYLLLPDYALRRTDSXXXXXXXXXXXXGCWACGAVPQDFYFWPRAKM 239 L +YL+ D D C AC VPQD F P AK+ Sbjct: 338 LNNYLVFND-----VDGLYTYTFEAERKENCSACSQVPQDMQFTPSAKL 381
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +3 Query: 6 PPPLRFLSTALPDPRPPPVSSTSAAKEP-VLG--SYLLLPDYA 125 PPPL + P+P PPP + A EP +G ++L LP +A Sbjct: 668 PPPLG--APEAPEPEPPPADDSPAEPEPRAVGRTNHLSLPRFA 708
>CSPG4_RAT (Q00657) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (HSN tumor-specific antigen) Length = 2326 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 12 PLRFLSTALPDPRPPPVSSTSAAKEPVLGSYLLLPDYALRRTDS 143 P+ F T LP PPV +T+ + G+ + +P ALR DS Sbjct: 1463 PMAFTITILPVNDQPPVITTNTGLQIWEGAIVPIPPEALRGIDS 1506
>XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 953 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = -2 Query: 153 SGAGNRCVAEHNRGAADTNQEPAPWQQRWS*REGGADLAKRWKGSEGGAGG 1 SGAG + A GAA+ Q AP ++R DLA + GG GG Sbjct: 40 SGAGEQRRAGAAAGAAEQQQPAAPRRER-------RDLAAHLPAARGGPGG 83
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/54 (25%), Positives = 27/54 (50%) Frame = -2 Query: 231 HAAKSRSLEELRRKPNNQGFSNEKSLSGAGNRCVAEHNRGAADTNQEPAPWQQR 70 H ++S R+ ++ G S+ G+G+R H+R + + Q P+P + R Sbjct: 494 HGSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGR 547
>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 28.1 bits (61), Expect = 8.8 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Frame = -2 Query: 192 KPNNQGFSNEKSLSGAGNRCVAEHNRGAADTNQEPAPWQQRWS*REG---GADLAKRWKG 22 KP+N S S SGAG R + +PW S G G L RW Sbjct: 83 KPDNNDGSKLNSNSGAG--------RTSRPGRTSDSPWFLSGSETLGRLAGNTLGSRWSS 134 Query: 21 SEGGAGG 1 GG+GG Sbjct: 135 GVGGSGG 141
>CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (Melanoma chondroitin sulfate proteoglycan) (Melanoma-associated chondroitin sulfate proteoglycan) Length = 2322 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 12 PLRFLSTALPDPRPPPVSSTSAAKEPVLGSYLLLPDYALRRTD 140 P+ F T LP PP+ +T+ + G+ +P ALR TD Sbjct: 1459 PVAFTVTVLPVNDQPPILTTNTGLQMWEGATAPIPAEALRSTD 1501 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,348,757 Number of Sequences: 219361 Number of extensions: 1310086 Number of successful extensions: 6105 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6072 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
