>HOXF_RALEU (P22317) NAD-reducing hydrogenase hoxS alpha subunit (EC 1.12.1.2)|
          Length = 602

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 159 FHVLSLEDSSGLTILEVAEKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCV 338
           F  +   DS+G  +L VA    K G+ ++    T    +A   +RD +  + + PS  CV
Sbjct: 394 FRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMVGARDARAVQISGPSGECV 453

>NPAS2_HUMAN (Q99743) Neuronal PAS domain protein 2 (Neuronal PAS2) (Member of|
           PAS protein 4) (MOP4)
          Length = 824

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 364 LSLRLCCHQHVKKLGLFRMCCLTLKLK-KRWMWM 462
           L L   CHQH+ + G  + CC     K ++W+W+
Sbjct: 293 LELLARCHQHLMQFGTGKSCCYRFLTKGQQWIWL 326

>NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)|
          Length = 816

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 364 LSLRLCCHQHVKKLGLFRMCCLTLKLK-KRWMWM 462
           L L   CHQH+ + G  + CC     K ++W+W+
Sbjct: 293 LELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWL 326

>CHLI_OLILU (Q32742) Magnesium-chelatase subunit chlI (EC 6.6.1.1)|
           (Mg-protoporphyrin IX chelatase)
          Length = 334

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 168 LSLEDSSGLTILEVAEKIQKSGLR-DLTTSKTPEASIAAALSRDTKLFERTAPSTYCVKS 344
           +++ D   L I +V  ++   GLR D+ T++  +A  A     + ++ +     T C++ 
Sbjct: 250 VTISDDFKLKISQVCSELDVDGLRGDIVTNRAAKAYAAFNNRTEVEIGDIEKVITLCLRH 309

Query: 345 PYRKDPAES 371
             RKDP E+
Sbjct: 310 RLRKDPLET 318

>CLD10_PONPY (Q5R8E5) Claudin-10|
          Length = 228

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 283 AAAIDASGVLLVVRSLSPDFWIFSATSNIVRPLLSSRESTWKAANFTVPGVRRCRD 116
           A  +  SG +LV  +L  D+W  S     V    +   + WKA      GV  C+D
Sbjct: 10  AFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKD 65

>CLD10_HUMAN (P78369) Claudin-10 (OSP-like protein)|
          Length = 228

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 283 AAAIDASGVLLVVRSLSPDFWIFSATSNIVRPLLSSRESTWKAANFTVPGVRRCRD 116
           A  +  SG +LV  +L  D+W  S     V    +   + WKA      GV  C+D
Sbjct: 10  AFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKD 65

>WNT9B_HUMAN (O14905) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b)|
          Length = 357

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 103 TPIVDLGTASLPGR*NLLLSMCFLLKIAVVSQYWKLQRKSRNLDSEILPQARHLRHL*LL 282
           TP   LGTA+ P +    L  C LLK++      + Q++    +  +    R   HL LL
Sbjct: 34  TPFPGLGTAAAPAQGGAHLKQCDLLKLS------RRQKQLCRREPGLAETLRDAAHLGLL 87

Query: 283 PCQ 291
            CQ
Sbjct: 88  ECQ 90

>WNT9B_MOUSE (O35468) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b)|
          Length = 359

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 103 TPIVDLGTASLPGR*NLLLSMCFLLKIAVVSQYWKLQRKSRNLDSEILPQARHLRHL*LL 282
           TP   LGTA+ P +    L  C LLK++      + Q++    +  +    R   HL LL
Sbjct: 36  TPFPGLGTAAAPAQAGAHLKQCDLLKLS------RRQKQLCRREPGLAETLRDAAHLGLL 89

Query: 283 PCQ 291
            CQ
Sbjct: 90  ECQ 92

>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  SPKWFSSRACCRSDERKRLHPSSISAPP 130
           SPK  SS +   S ERKR  PS ++ PP
Sbjct: 637 SPKSSSSSSSSSSGERKRKSPSPLTVPP 664

>COFH2_METMA (Q8PU53) FO synthase subunit 2 2 (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
           subunit 2 2)
          Length = 392

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 123 HRLTPGTVKFAAFHVLSLEDSSGLTILEVAEKIQKSGLRDLT 248
           H L+P  V +AA       ++SG+++ E   +++KSGL  LT
Sbjct: 144 HALSPMEVNYAA-------ETSGMSVEEALRRLKKSGLDSLT 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,399,886
Number of Sequences: 219361
Number of extensions: 1408747
Number of successful extensions: 4098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4097
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)