ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal17b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUCR1_MOUSE (Q99MT6) Succinate receptor 1 (G-protein coupled rec... 30 1.3
2TRPD_BACPU (P18261) Anthranilate phosphoribosyltransferase (EC 2... 28 4.9
3COX3_THEPA (Q36098) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 28 8.3

>SUCR1_MOUSE (Q99MT6) Succinate receptor 1 (G-protein coupled receptor 91)|
          Length = 317

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 225 FYATVKYAIQYVFCIYISFAVKYATQYMFCSHNFLQANLYKF 100
           +Y +  YAI+++F +  +  V +   Y+FC  N+  +N+Y F
Sbjct: 20  YYLSAFYAIEFIFGLLGNVTVVFG--YLFCMKNWNSSNVYLF 59



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>TRPD_BACPU (P18261) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 340

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 18  DDPSKYSMCGVVCIVYVAACAFIMKS**ICTDWLXGSCDYRTCIGLHI--SPQ--RKYIY 185
           D  S +++     IV  AA A I K          GS D   C+G+HI  +P+  R+ I 
Sbjct: 82  DGLSTFNISTAAAIVRSAAGAKIAKHGNRSVSSKSGSADVLECLGIHIQSTPEETRRQIQ 141

Query: 186 RRRIGLRTSPLH 221
            + +G   +PL+
Sbjct: 142 EKNMGFLFAPLY 153



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>COX3_THEPA (Q36098) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 255

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 231 FFFYATVKYAIQYVFCIYISFAVKYATQYMFCSHNFLQANLYKFIMIS 88
           + FY+T    ++Y+   Y +F + Y  QY+         ++ +F M S
Sbjct: 22  YLFYSTGLDTLEYIDSTYKNFIIMYVNQYLLYGTTLKYLSVGEFFMNS 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,304,415
Number of Sequences: 219361
Number of extensions: 581487
Number of successful extensions: 1267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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