ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal16j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476701.1| Oryza sativa (japonica cultivar-group), mRNA 214 2e-52
2dbj|AK065877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6dbj|AK110861.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
7emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4,... 105 1e-19
8ref|XM_472589.1| Oryza sativa (japonica cultivar-group), predic... 94 4e-16
9gb|AC147211.2| Xenopus tropicalis clone CH216-77F21, complete se... 46 0.084
10ref|XM_227405.3| PREDICTED: Rattus norvegicus similar to UBIN (p... 44 0.33
11ref|XM_777693.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.3
12gb|AC009377.7| Drosophila melanogaster 3L BAC RP98-26P20 (Roswel... 42 1.3
13gb|AC025168.7|AC025168 Homo sapiens chromosome 15 clone RP11-43D... 42 1.3
14gb|AC012377.5|AC012377 Homo sapiens chromosome 15 clone RP11-325... 42 1.3
15gb|AC009376.7| Drosophila melanogaster 3 BAC RPCI98-1D4 (Roswell... 42 1.3
16gb|AE003517.3| Drosophila melanogaster chromosome 3L, section 68... 42 1.3
17gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.3
18gb|BC017686.1| Mus musculus ubiquilin 4, mRNA (cDNA clone MGC:19... 40 5.2
19gb|AC093819.4| Homo sapiens BAC clone RP11-368D18 from 4, comple... 40 5.2
20gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome 40 5.2
21ref|XM_755698.1| Ustilago maydis 521 hypothetical protein (UM046... 40 5.2
22gb|AC131702.3| Mus musculus BAC clone RP24-177J5 from chromosome... 40 5.2
23gb|AY282522.1| Myxococcus xanthus polyketide synthetase TA-1 gen... 40 5.2
24emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 5.2
25emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment ... 40 5.2
26dbj|AK150211.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 5.2
27dbj|AK156515.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.2
28dbj|AK160578.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 5.2
29emb|AL954641.12| Zebrafish DNA sequence from clone CH211-278J9 i... 40 5.2
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
31dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
32dbj|AK214528.1| Mus musculus cDNA, clone:Y2G0132B04, strand:plus... 40 5.2
33dbj|AK211295.1| Mus musculus cDNA, clone:Y2G0121E14, strand:minu... 40 5.2
34emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 i... 40 5.2
35emb|AL356585.7| Human DNA sequence from clone RP11-341D18 on chr... 40 5.2
36ref|NM_033526.1| Mus musculus ubiquilin 4 (Ubqln4), mRNA 40 5.2
37gb|AC145168.5| Mus musculus BAC clone RP23-398K14 from 3, comple... 40 5.2
38dbj|AB040050.1| Mus musculus mRNA for UBIN, complete cds 40 5.2 
>ref|XM_476701.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2254

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Plus

                                                                       
Query: 143 catgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcctccga 202
           ||||||||||||||||||||||||||||||||||||||||||| |    |||||| ||| 
Sbjct: 228 catgatggatccggagatgatgcggctggcgcaggagcagatgagcaagatgtcccccgc 287

                                                                       
Query: 203 cgacctcgccaggatgcaacagcagctcatgtccaatcctgacctgataaagttagcatc 262
            ||||||||||||||||| ||||||||  |||| |||||| ||||  |||||||||||||
Sbjct: 288 tgacctcgccaggatgcagcagcagcttctgtcaaatcctaacctagtaaagttagcatc 347

                                                                       
Query: 263 tgagagtatgaaaaatatgagaactgaggacttcaaaagagctgctgaacagctgaatca 322
           |||||| ||||| ||||||||| |||| ||||||| | |||||||  | ||| |||||||
Sbjct: 348 tgagagcatgaagaatatgagagctgatgacttcagacgagctgcacagcagatgaatca 407

                                                                       
Query: 323 aacaaggccagaggaaatgcttgatatgactgaaaaaattgcaaatgctaagcctgagga 382
           |||||| ||||| ||||||||||||||| | |||||| |||| |||||||| || |||||
Sbjct: 408 aacaagaccagatgaaatgcttgatatggccgaaaaacttgccaatgctaatcccgagga 467
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>dbj|AK065877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050G10, full
           insert sequence
          Length = 2254

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Plus

                                                                       
Query: 143 catgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcctccga 202
           ||||||||||||||||||||||||||||||||||||||||||| |    |||||| ||| 
Sbjct: 228 catgatggatccggagatgatgcggctggcgcaggagcagatgagcaagatgtcccccgc 287

                                                                       
Query: 203 cgacctcgccaggatgcaacagcagctcatgtccaatcctgacctgataaagttagcatc 262
            ||||||||||||||||| ||||||||  |||| |||||| ||||  |||||||||||||
Sbjct: 288 tgacctcgccaggatgcagcagcagcttctgtcaaatcctaacctagtaaagttagcatc 347

                                                                       
Query: 263 tgagagtatgaaaaatatgagaactgaggacttcaaaagagctgctgaacagctgaatca 322
           |||||| ||||| ||||||||| |||| ||||||| | |||||||  | ||| |||||||
Sbjct: 348 tgagagcatgaagaatatgagagctgatgacttcagacgagctgcacagcagatgaatca 407

                                                                       
Query: 323 aacaaggccagaggaaatgcttgatatgactgaaaaaattgcaaatgctaagcctgagga 382
           |||||| ||||| ||||||||||||||| | |||||| |||| |||||||| || |||||
Sbjct: 408 aacaagaccagatgaaatgcttgatatggccgaaaaacttgccaatgctaatcccgagga 467
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                           
Query: 232     tgtccaatcctgacctgataaagttagcatctgagagtatgaaaaatatgagaactgagg 291
               |||| |||||| ||||  ||||||||||||||||||| ||||| ||||||||| |||| |
Sbjct: 3306919 tgtcaaatcctaacctagtaaagttagcatctgagagcatgaagaatatgagagctgatg 3306860

                                                                           
Query: 292     acttcaaaagagctgctgaacagctgaatcaaacaaggccagaggaaatgcttgatatga 351
               |||||| | |||||||  | ||| ||||||||||||| ||||| ||||||||||||||| 
Sbjct: 3306859 acttcagacgagctgcacagcagatgaatcaaacaagaccagatgaaatgcttgatatgg 3306800

                                              
Query: 352     ctgaaaaaattgcaaatgctaagcctgagga 382
               | |||||| |||| |||||||| || |||||
Sbjct: 3306799 ccgaaaaacttgccaatgctaatcccgagga 3306769



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                           
Query: 143     catgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcctccga 202
               ||||||||||||||||||||||||||||||||||||||||||| |    |||||| ||| 
Sbjct: 3307832 catgatggatccggagatgatgcggctggcgcaggagcagatgagcaagatgtcccccgc 3307773

                                        
Query: 203     cgacctcgccaggatgcaacagcag 227
                ||||||||||||||||| ||||||
Sbjct: 3307772 tgacctcgccaggatgcagcagcag 3307748
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                          
Query: 232    tgtccaatcctgacctgataaagttagcatctgagagtatgaaaaatatgagaactgagg 291
              |||| |||||| ||||  ||||||||||||||||||| ||||| ||||||||| |||| |
Sbjct: 116612 tgtcaaatcctaacctagtaaagttagcatctgagagcatgaagaatatgagagctgatg 116553

                                                                          
Query: 292    acttcaaaagagctgctgaacagctgaatcaaacaaggccagaggaaatgcttgatatga 351
              |||||| | |||||||  | ||| ||||||||||||| ||||| ||||||||||||||| 
Sbjct: 116552 acttcagacgagctgcacagcagatgaatcaaacaagaccagatgaaatgcttgatatgg 116493

                                             
Query: 352    ctgaaaaaattgcaaatgctaagcctgagga 382
              | |||||| |||| |||||||| || |||||
Sbjct: 116492 ccgaaaaacttgccaatgctaatcccgagga 116462



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                          
Query: 143    catgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcctccga 202
              ||||||||||||||||||||||||||||||||||||||||||| |    |||||| ||| 
Sbjct: 117525 catgatggatccggagatgatgcggctggcgcaggagcagatgagcaagatgtcccccgc 117466

                                       
Query: 203    cgacctcgccaggatgcaacagcag 227
               ||||||||||||||||| ||||||
Sbjct: 117465 tgacctcgccaggatgcagcagcag 117441
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                            
Query: 138      gccgccatgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcc 197
                |||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct: 21759362 gccgccatgatggacccggagatgatgcgggtggcgcaggagcagatgagacggatgccc 21759421

                                                         
Query: 198      tccgacgacctcgccaggatgcaacagcagctcatgtccaa 238
                 ||| ||  ||||||  |||||| |||||||||||||||||
Sbjct: 21759422 cccgccgcgctcgccgcgatgcagcagcagctcatgtccaa 21759462
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>dbj|AK110861.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D07, full
           insert sequence
          Length = 1443

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 138 gccgccatgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcc 197
           |||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct: 102 gccgccatgatggacccggagatgatgcgggtggcgcaggagcagatgagacggatgccc 161

                                                    
Query: 198 tccgacgacctcgccaggatgcaacagcagctcatgtccaa 238
            ||| ||  ||||||  |||||| |||||||||||||||||
Sbjct: 162 cccgccgcgctcgccgcgatgcagcagcagctcatgtccaa 202
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>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20,
             complete sequence
          Length = 141915

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                         
Query: 138   gccgccatgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcc 197
             |||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct: 70979 gccgccatgatggacccggagatgatgcgggtggcgcaggagcagatgagacggatgccc 71038

                                                      
Query: 198   tccgacgacctcgccaggatgcaacagcagctcatgtccaa 238
              ||| ||  ||||||  |||||| |||||||||||||||||
Sbjct: 71039 cccgccgcgctcgccgcgatgcagcagcagctcatgtccaa 71079
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>ref|XM_472589.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1179

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                       
Query: 144 atgatggatccggagatgatgcggctggcgcaggagcagatgcgacgcatgtcctccgac 203
           |||||||| ||||||||||||||| ||||||||||||||||| |||| ||| || ||| |
Sbjct: 1   atgatggacccggagatgatgcgggtggcgcaggagcagatgagacggatgccccccgcc 60

                                              
Query: 204 gacctcgccaggatgcaacagcagctcatgtccaa 238
           |  ||||||  |||||| |||||||||||||||||
Sbjct: 61  gcgctcgccgcgatgcagcagcagctcatgtccaa 95
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>gb|AC147211.2| Xenopus tropicalis clone CH216-77F21, complete sequence
          Length = 156239

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 341    gcttgatatgactgaaaaaattg 363
              |||||||||||||||||||||||
Sbjct: 133926 gcttgatatgactgaaaaaattg 133948
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>ref|XM_227405.3| PREDICTED: Rattus norvegicus similar to UBIN (predicted)
           (LOC310633), mRNA
          Length = 2331

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 215 gatgcaacagcagctcatgtccaatcctga 244
           |||||| | |||||||||||||||||||||
Sbjct: 626 gatgcagcggcagctcatgtccaatcctga 655
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>ref|XM_777693.1| PREDICTED: Strongylocentrotus purpuratus similar to epsin 2
            (LOC577465), mRNA
          Length = 1955

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 158  gatgatgcggctggcgcaggagcag 182
            |||||||||||||| ||||||||||
Sbjct: 1306 gatgatgcggctggtgcaggagcag 1282
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>gb|AC009377.7| Drosophila melanogaster 3L BAC RP98-26P20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194308

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 215    gatgcaacagcagctcatgtccaat 239
              |||||||||||||||||||| ||||
Sbjct: 192082 gatgcaacagcagctcatgtgcaat 192058
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>gb|AC025168.7|AC025168 Homo sapiens chromosome 15 clone RP11-43D14 map 15q14, complete
             sequence
          Length = 173336

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 263   tgagagtatgaaaaatatgag 283
             |||||||||||||||||||||
Sbjct: 82441 tgagagtatgaaaaatatgag 82461
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>gb|AC012377.5|AC012377 Homo sapiens chromosome 15 clone RP11-325N19 map 15q14, complete sequence
          Length = 197782

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 263    tgagagtatgaaaaatatgag 283
              |||||||||||||||||||||
Sbjct: 188541 tgagagtatgaaaaatatgag 188561
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>gb|AC009376.7| Drosophila melanogaster 3 BAC RPCI98-1D4 (Roswell Park Cancer Institute
              Human PAC library) complete sequence
          Length = 183948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 215    gatgcaacagcagctcatgtccaat 239
              |||||||||||||||||||| ||||
Sbjct: 177975 gatgcaacagcagctcatgtgcaat 177999
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>gb|AE003517.3| Drosophila melanogaster chromosome 3L, section 68 of 83 of the complete
              sequence
          Length = 257692

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 215    gatgcaacagcagctcatgtccaat 239
              |||||||||||||||||||| ||||
Sbjct: 251211 gatgcaacagcagctcatgtgcaat 251187
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 153     ccggagatgatgcggctggcg 173
               |||||||||||||||||||||
Sbjct: 3514019 ccggagatgatgcggctggcg 3514039



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 161     gatgcggctggcgcaggagc 180
               ||||||||||||||||||||
Sbjct: 2663321 gatgcggctggcgcaggagc 2663302
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>gb|BC017686.1| Mus musculus ubiquilin 4, mRNA (cDNA clone MGC:19200
           IMAGE:4236887), complete cds
          Length = 3357

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 598 cagctcatgtccaatcctga 617
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>gb|AC093819.4| Homo sapiens BAC clone RP11-368D18 from 4, complete sequence
          Length = 168474

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   aaggccagaggaaatgcttg 345
             ||||||||||||||||||||
Sbjct: 25564 aaggccagaggaaatgcttg 25545
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>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    gaaaaaattgcaaatgctaa 373
              ||||||||||||||||||||
Sbjct: 244953 gaaaaaattgcaaatgctaa 244934
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>ref|XM_755698.1| Ustilago maydis 521 hypothetical protein (UM04644.1) partial mRNA
          Length = 1638

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcggctggcgcaggagcaga 183
           ||||||||||||||||||||
Sbjct: 497 gcggctggcgcaggagcaga 478
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>gb|AC131702.3| Mus musculus BAC clone RP24-177J5 from chromosome 7, complete sequence
          Length = 154632

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    aagttagcatctgagagtatgaaa 275
              ||||||||||||||||||| ||||
Sbjct: 130709 aagttagcatctgagagtaagaaa 130732
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>gb|AY282522.1| Myxococcus xanthus polyketide synthetase TA-1 gene, complete sequence
          Length = 26000

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   gatgatgcggctggcgcagg 177
             ||||||||||||||||||||
Sbjct: 24412 gatgatgcggctggcgcagg 24393
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 213     aggatgcaacagcagctcat 232
               ||||||||||||||||||||
Sbjct: 3366245 aggatgcaacagcagctcat 3366264
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>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24
          Length = 295650

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 91    cccatcggtcgcttcgatctgcgtgttg 118
             ||||||| ||||||||||| ||||||||
Sbjct: 10567 cccatcgatcgcttcgatccgcgtgttg 10594
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>dbj|AK150211.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530144M21 product:UBIN
           (Ataxin-1 ubiquitin-like interacting protein), full
           insert sequence
          Length = 2655

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 574 cagctcatgtccaatcctga 593
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>dbj|AK156515.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830028B02 product:UBIN (Ataxin-1
           ubiquitin-like interacting protein), full insert
           sequence
          Length = 3325

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 590 cagctcatgtccaatcctga 609
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>dbj|AK160578.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410164A15 product:UBIN (Ataxin-1 ubiquitin-like
           interacting protein) homolog [Mus musculus], full insert
           sequence
          Length = 1381

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 588 cagctcatgtccaatcctga 607
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>emb|AL954641.12| Zebrafish DNA sequence from clone CH211-278J9 in linkage group 2,
              complete sequence
          Length = 167140

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    cttgatatgactgaaaaaat 361
              ||||||||||||||||||||
Sbjct: 104435 cttgatatgactgaaaaaat 104454
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 313      agctgaatcaaacaaggcca 332
                ||||||||||||||||||||
Sbjct: 19723828 agctgaatcaaacaaggcca 19723809
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>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1166B08
          Length = 147667

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   agctgaatcaaacaaggcca 332
             ||||||||||||||||||||
Sbjct: 72450 agctgaatcaaacaaggcca 72431
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>dbj|AK214528.1| Mus musculus cDNA, clone:Y2G0132B04, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000008748, based on BLAT search
          Length = 378

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 38  cagctcatgtccaatcctga 57
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>dbj|AK211295.1| Mus musculus cDNA, clone:Y2G0121E14, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000008748, based on BLAT search
          Length = 397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 28  cagctcatgtccaatcctga 47
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>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2,
              complete sequence
          Length = 185178

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    cttgatatgactgaaaaaat 361
              ||||||||||||||||||||
Sbjct: 173762 cttgatatgactgaaaaaat 173781
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>emb|AL356585.7| Human DNA sequence from clone RP11-341D18 on chromosome 22, complete
             sequence
          Length = 186858

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   caaaagagctgctgaacagc 315
             ||||||||||||||||||||
Sbjct: 29198 caaaagagctgctgaacagc 29179
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>ref|NM_033526.1| Mus musculus ubiquilin 4 (Ubqln4), mRNA
          Length = 3383

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 636 cagctcatgtccaatcctga 655
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>gb|AC145168.5| Mus musculus BAC clone RP23-398K14 from 3, complete sequence
          Length = 217058

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    cagctcatgtccaatcctga 244
              ||||||||||||||||||||
Sbjct: 122827 cagctcatgtccaatcctga 122846
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>dbj|AB040050.1| Mus musculus mRNA for UBIN, complete cds
          Length = 3383

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cagctcatgtccaatcctga 244
           ||||||||||||||||||||
Sbjct: 636 cagctcatgtccaatcctga 655


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,662,071
Number of Sequences: 3902068
Number of extensions: 3662071
Number of successful extensions: 62876
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62683
Number of HSP's gapped (non-prelim): 189
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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