ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal16j07 |
|---|---|
| Clone Library Name | barley_pub |
>PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31| Length = 518 Score = 42.4 bits (98), Expect = 7e-04 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Frame = +1 Query: 16 EGYGMLGQAGSGKLRVSA--AQNKLAAKVAKKFKERSYXXX--XXXXXXXXXXXFTPVQG 183 EG GMLGQ G GK+R + ++ KL A+K + +S FTP+QG Sbjct: 418 EGLGMLGQEGEGKIRAVSIDSRTKLRLPKARKAQLQSMAQKNPLAASGLQSSLSFTPIQG 477 Query: 184 IELSNP 201 IEL NP Sbjct: 478 IELVNP 483
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Frame = +1 Query: 13 GEGYGMLGQAGSGKLRVSAAQNKLAAKVAKKFKERSYXXXXX----------XXXXXXXX 162 G G LG++GSG++R + + A+++K + Sbjct: 404 GFSLGQLGKSGSGRVRQAQVNDSTKARISKSLQRTLQKQSMTYGGKSTVRDRSSGTSSSV 463 Query: 163 XFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 276 FTP+QG+E+ NP A + Q YFS F ++ Sbjct: 464 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSNMAEFLKV 500
>PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 39.3 bits (90), Expect = 0.006 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Frame = +1 Query: 13 GEGYGMLGQAGSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 162 G G LG++GSG++R + A+++K + Sbjct: 392 GFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSV 451 Query: 163 XFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINN 282 FTP+QG+E+ NP A + Q YFS F ++ + Sbjct: 452 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVKS 490
>PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 39.3 bits (90), Expect = 0.006 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Frame = +1 Query: 13 GEGYGMLGQAGSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 162 G G LG++GSG++R + A+++K + Sbjct: 392 GFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSVVYGGKSTVRDRSSGTASSV 451 Query: 163 XFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINN 282 FTP+QG+E+ NP A + Q YFS F ++ + Sbjct: 452 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVKS 490
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 38.5 bits (88), Expect = 0.010 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Frame = +1 Query: 13 GEGYGMLGQAGSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 162 G G LG++GSG++R + A+++K + Sbjct: 393 GFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSV 452 Query: 163 XFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 276 FTP+QG+E+ NP A + Q YFS F ++ Sbjct: 453 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined breast cancer antigen NY-BR-99) Length = 499 Score = 38.5 bits (88), Expect = 0.010 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Frame = +1 Query: 13 GEGYGMLGQAGSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 162 G G LG++GSG++R + A+++K + Sbjct: 393 GFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSV 452 Query: 163 XFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 276 FTP+QG+E+ NP A + Q YFS F ++ Sbjct: 453 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>NU1M_SAGOE (O78694) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -3 Query: 326 FSSSD*IPTSVTHGLLLIRENVPVSEK*VLWVPLPRRFP 210 F+ +PTS T L LI + +S +LW PLP +P Sbjct: 56 FTKEPLLPTSSTSTLYLIAPTLALSISLLLWTPLPMPYP 94
>TPIS_ANASP (Q8YP17) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 241 Score = 30.4 bits (67), Expect = 2.8 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = +1 Query: 172 PVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINNRP*VTEVGI 309 P + + + HG+L+ G Q+ +++E G ++ + P +TE+G+ Sbjct: 44 PFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGV 89
>MRP5_ARATH (Q7GB25) Multidrug resistance-associated protein 5 (EC 3.6.3.44)| (Glutathione S-conjugate transporting ATPase 5) (ATP-energized glutathione S-conjugate pump 5) Length = 1514 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 13/57 (22%) Frame = -2 Query: 228 ASKKVP--VRMWV*QLYSLNWC-----------KGQTRCQSRCCATGTITPLLEFLC 97 +S+K+P VR+W +S+ C +G +RC S A +TP L FLC Sbjct: 137 SSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPALGFLC 193
>TRPV4_RAT (Q9ERZ8) Transient receptor potential cation channel subfamily V| member 4 (TrpV4) (osm-9-like TRP channel 4) (OTRPC4) (Vanilloid receptor-related osmotically-activated channel) (VR-OAC) Length = 871 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 303 NLSHSWPIIDPRKCARLGEIGALGSASKKVPVRMWV*QLYSLNW 172 ++ S+P+ RK R GE+ +G +S P R W ++ +NW Sbjct: 743 DIERSFPVF-LRKAFRSGEMVTVGKSSDGTPDRRWCFRVDEVNW 785
>TRPV4_MOUSE (Q9EPK8) Transient receptor potential cation channel subfamily V| member 4 (TrpV4) (osm-9-like TRP channel 4) (OTRPC4) (Vanilloid receptor-like channel 2) (Vanilloid receptor-like protein 2) (Vanilloid receptor-related osmotically-activated ch Length = 871 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 303 NLSHSWPIIDPRKCARLGEIGALGSASKKVPVRMWV*QLYSLNW 172 ++ S+P+ RK R GE+ +G +S P R W ++ +NW Sbjct: 743 DIERSFPVF-LRKAFRSGEMVTVGKSSDGTPDRRWCFRVDEVNW 785
>TRPV4_HUMAN (Q9HBA0) Transient receptor potential cation channel subfamily V| member 4 (TrpV4) (osm-9-like TRP channel 4) (OTRPC4) (Vanilloid receptor-like channel 2) (Vanilloid receptor-like protein 2) (VRL-2) (Vanilloid receptor-related osmotically-acti Length = 871 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 303 NLSHSWPIIDPRKCARLGEIGALGSASKKVPVRMWV*QLYSLNW 172 ++ S+P+ RK R GE+ +G +S P R W ++ +NW Sbjct: 743 DIERSFPVF-LRKAFRSGEMVTVGKSSDGTPDRRWCFRVDEVNW 785
>B2L12_HUMAN (Q9HB09) Bcl-2-related proline-rich protein (Bcl-2-like 12 protein)| Length = 334 Score = 28.9 bits (63), Expect = 8.1 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -3 Query: 101 FATLAASLFCAAETRSFPLPACPSMP*PSP 12 FA L LFC+ + S P ACP P PSP Sbjct: 246 FARLV-ELFCSRDDSSRPSRACPGPPPPSP 274
>NU2M_ASTPE (Q33819) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 354 Score = 28.9 bits (63), Expect = 8.1 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Frame = -1 Query: 475 LSVLTLQTQPPRYN*EYKLTLCKCMNPKRCWALCAE*DQETILS--FNLTLPFHLQIRFQ 302 LS+L+L PP + K KC+ C+ L ++LS F L + F+ + Sbjct: 246 LSILSLGGLPPLFGFLIKFISLKCLVENGCFILAGVLVMGSLLSLFFYLRIAFNSSLTLF 305 Query: 301 PQSLMAYY*SEKMCPSRRNRCSGF 230 PQ + + S RN+ GF Sbjct: 306 PQHSLVVF----SWRSNRNQTGGF 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,071,256 Number of Sequences: 219361 Number of extensions: 1692269 Number of successful extensions: 4200 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4022 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4198 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
