ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal16g20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_481225.1| Oryza sativa (japonica cultivar-group), mRNA 303 2e-79
2dbj|AK072643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 303 2e-79
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 258 1e-65
4dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic D... 258 1e-65
5gb|AY110255.1| Zea mays CL3925_1 mRNA sequence 224 1e-55
6ref|XM_463898.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-05
7ref|XM_506688.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 8e-05
8dbj|AK102774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
9dbj|AK060055.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
10emb|AL663012.3|OSJN00217 Oryza sativa genomic DNA, chromosome 4,... 44 0.30
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
13emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4,... 44 0.30
14dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
15gb|AC120985.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
16gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
17gb|AC145392.2| Mus musculus BAC clone RP24-171E5 from chromosome... 40 4.7
18ref|XM_452110.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B13002g ... 40 4.7
19gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA... 40 4.7
20gb|AC095904.7| Rattus norvegicus 9 BAC CH230-10L20 (Children's H... 40 4.7
21emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 4.7
22dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
23emb|BX813633.1|CNS0AEK0 Arabidopsis thaliana Full-length cDNA Co... 40 4.7
24gb|AF270036.1|AF270036 Staphylococcus epidermidis strain SR1 clo... 40 4.7
25gb|AF269816.1|AF269816 Staphylococcus epidermidis strain SR1 clo... 40 4.7
26gb|AF269713.1|AF269713 Staphylococcus epidermidis strain SR1 clo... 40 4.7
27gb|AF269542.1|AF269542 Staphylococcus epidermidis strain SR1 clo... 40 4.7
28gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 4.7
29dbj|AK109688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
30emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.7
31gb|AC006584.12|AC006584 Mus musculus BAC GSMB-407A4 (Genome Sys... 40 4.7
32gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 4.7
33gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complet... 40 4.7
34gb|AC098835.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7

>ref|XM_481225.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1211

 Score =  303 bits (153), Expect = 2e-79
 Identities = 249/281 (88%)
 Strand = Plus / Plus

                                                                       
Query: 74  gcaatggcatcatcttcggacccatggatgaaagagtacactgaagcatctaagcttgtt 133
           |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
Sbjct: 272 gcaatggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgct 331

                                                                       
Query: 134 gatgatataagttccatgattgccgatagaagttctcttccacaatcaggccccgaaatt 193
           |||||||| | ||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 332 gatgatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaatt 391

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           || || ||||||||||||||||| |||||||||||||||||| | ||||||||||| |||
Sbjct: 392 atacgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagc 451

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
           ||||   |||||||||||| |||||| || |||||||||| |||||| ||| | || |||
Sbjct: 452 ttggaagcattgttgtccaagattcctccgaagtcactcagtgacaaggagttacacaag 511

                                                    
Query: 314 cgccaagatgcgctttccaacttgaaatccaaagcaaaaca 354
           ||||||||  |||||||||| |||||||| ||| |||||||
Sbjct: 512 cgccaagacacgctttccaatttgaaatctaaaacaaaaca 552



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>dbj|AK072643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F24, full
           insert sequence
          Length = 1212

 Score =  303 bits (153), Expect = 2e-79
 Identities = 249/281 (88%)
 Strand = Plus / Plus

                                                                       
Query: 74  gcaatggcatcatcttcggacccatggatgaaagagtacactgaagcatctaagcttgtt 133
           |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
Sbjct: 272 gcaatggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgct 331

                                                                       
Query: 134 gatgatataagttccatgattgccgatagaagttctcttccacaatcaggccccgaaatt 193
           |||||||| | ||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 332 gatgatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaatt 391

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           || || ||||||||||||||||| |||||||||||||||||| | ||||||||||| |||
Sbjct: 392 atacgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagc 451

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
           ||||   |||||||||||| |||||| || |||||||||| |||||| ||| | || |||
Sbjct: 452 ttggaagcattgttgtccaagattcctccgaagtcactcagtgacaaggagttacacaag 511

                                                    
Query: 314 cgccaagatgcgctttccaacttgaaatccaaagcaaaaca 354
           ||||||||  |||||||||| |||||||| ||| |||||||
Sbjct: 512 cgccaagacacgctttccaatttgaaatctaaaacaaaaca 552



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  258 bits (130), Expect = 1e-65
 Identities = 196/218 (89%)
 Strand = Plus / Plus

                                                                            
Query: 74       gcaatggcatcatcttcggacccatggatgaaagagtacactgaagcatctaagcttgtt 133
                |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
Sbjct: 10754666 gcaatggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgct 10754725

                                                                            
Query: 134      gatgatataagttccatgattgccgatagaagttctcttccacaatcaggccccgaaatt 193
                |||||||| | ||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 10754726 gatgatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaatt 10754785

                                                                            
Query: 194      atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
                || || ||||||||||||||||| |||||||||||||||||| | ||||||||||| |||
Sbjct: 10754786 atacgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagc 10754845

                                                      
Query: 254      ttggtgacattgttgtccaggattccgccaaagtcact 291
                ||||   |||||||||||| |||||| || ||||||||
Sbjct: 10754846 ttggaagcattgttgtccaagattcctccgaagtcact 10754883



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 311      aagcgccaagatgcgctttccaacttgaaatccaaagcaaaaca 354
                |||||||||||  |||||||||| |||||||| ||| |||||||
Sbjct: 10755779 aagcgccaagacacgctttccaatttgaaatctaaaacaaaaca 10755822



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>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091M20
          Length = 132976

 Score =  258 bits (130), Expect = 1e-65
 Identities = 196/218 (89%)
 Strand = Plus / Plus

                                                                         
Query: 74    gcaatggcatcatcttcggacccatggatgaaagagtacactgaagcatctaagcttgtt 133
             |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
Sbjct: 51798 gcaatggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgct 51857

                                                                         
Query: 134   gatgatataagttccatgattgccgatagaagttctcttccacaatcaggccccgaaatt 193
             |||||||| | ||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 51858 gatgatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaatt 51917

                                                                         
Query: 194   atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
             || || ||||||||||||||||| |||||||||||||||||| | ||||||||||| |||
Sbjct: 51918 atacgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagc 51977

                                                   
Query: 254   ttggtgacattgttgtccaggattccgccaaagtcact 291
             ||||   |||||||||||| |||||| || ||||||||
Sbjct: 51978 ttggaagcattgttgtccaagattcctccgaagtcact 52015



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 311   aagcgccaagatgcgctttccaacttgaaatccaaagcaaaaca 354
             |||||||||||  |||||||||| |||||||| ||| |||||||
Sbjct: 52911 aagcgccaagacacgctttccaatttgaaatctaaaacaaaaca 52954



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>gb|AY110255.1| Zea mays CL3925_1 mRNA sequence
          Length = 993

 Score =  224 bits (113), Expect = 1e-55
 Identities = 213/248 (85%)
 Strand = Plus / Plus

                                                                       
Query: 74  gcaatggcatcatcttcggacccatggatgaaagagtacactgaagcatctaagcttgtt 133
           |||||||||||||||||||||||||||||||| || |||| ||||||||| |  |||| |
Sbjct: 28  gcaatggcatcatcttcggacccatggatgaaggaatacaatgaagcatccagacttgct 87

                                                                       
Query: 134 gatgatataagttccatgattgccgatagaagttctcttccacaatcaggccccgaaatt 193
           ||||| || ||||||||||||||||| ||| | ||||||||||| |||||||| ||||||
Sbjct: 88  gatgacatcagttccatgattgccgacagagggtctcttccacagtcaggcccagaaatt 147

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           ||||| || || ||||||||||||||     ||||||||||||| ||||||||||| |||
Sbjct: 148 atgcggcatacttcagccattcggagnnnnntaactattcttgggactagactggatagc 207

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
           |||| | ||||| |   ||| ||||| ||||||||| |||||||||| ||||||||||| 
Sbjct: 208 ttggagtcattgcttggcagaattcctccaaagtcaatcactgacaaggagatgcataaa 267

                   
Query: 314 cgccaaga 321
           ||||||||
Sbjct: 268 cgccaaga 275



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>ref|XM_463898.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1049

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 103/128 (80%)
 Strand = Plus / Plus

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           ||||||||||| || ||||||||||| || ||||| || || || ||||| || || |||
Sbjct: 273 atgcgccacacctcggccattcggaggaagataaccatcctcgggactaggctcgatagc 332

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
            | | | | ||| ||||||||||||| || |||||  |||| ||||| ||| ||||||||
Sbjct: 333 ctcgaggccttgctgtccaggattcctcccaagtccatcacggacaaggagttgcataag 392

                   
Query: 314 cgccaaga 321
           || |||||
Sbjct: 393 cgacaaga 400



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>ref|XM_506688.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1217_F02.19
           mRNA
          Length = 1130

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 103/128 (80%)
 Strand = Plus / Plus

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           ||||||||||| || ||||||||||| || ||||| || || || ||||| || || |||
Sbjct: 263 atgcgccacacctcggccattcggaggaagataaccatcctcgggactaggctcgatagc 322

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
            | | | | ||| ||||||||||||| || |||||  |||| ||||| ||| ||||||||
Sbjct: 323 ctcgaggccttgctgtccaggattcctcccaagtccatcacggacaaggagttgcataag 382

                   
Query: 314 cgccaaga 321
           || |||||
Sbjct: 383 cgacaaga 390



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>dbj|AK102774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107H09, full
           insert sequence
          Length = 1130

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 103/128 (80%)
 Strand = Plus / Plus

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           ||||||||||| || ||||||||||| || ||||| || || || ||||| || || |||
Sbjct: 263 atgcgccacacctcggccattcggaggaagataaccatcctcgggactaggctcgatagc 322

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
            | | | | ||| ||||||||||||| || |||||  |||| ||||| ||| ||||||||
Sbjct: 323 ctcgaggccttgctgtccaggattcctcccaagtccatcacggacaaggagttgcataag 382

                   
Query: 314 cgccaaga 321
           || |||||
Sbjct: 383 cgacaaga 390



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>dbj|AK060055.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D08, full
           insert sequence
          Length = 1049

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 103/128 (80%)
 Strand = Plus / Plus

                                                                       
Query: 194 atgcgccacacatcagccattcggagaaaaataactattcttggcactagactggacagc 253
           ||||||||||| || ||||||||||| || ||||| || || || ||||| || || |||
Sbjct: 273 atgcgccacacctcggccattcggaggaagataaccatcctcgggactaggctcgatagc 332

                                                                       
Query: 254 ttggtgacattgttgtccaggattccgccaaagtcactcactgacaaagagatgcataag 313
            | | | | ||| ||||||||||||| || |||||  |||| ||||| ||| ||||||||
Sbjct: 333 ctcgaggccttgctgtccaggattcctcccaagtccatcacggacaaggagttgcataag 392

                   
Query: 314 cgccaaga 321
           || |||||
Sbjct: 393 cgacaaga 400



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>emb|AL663012.3|OSJN00217 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0069N01,
             complete sequence
          Length = 180264

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 37    cggnggcgacgtcggcggcaacggccggc 65
             ||| |||||||| ||||||||||||||||
Sbjct: 11785 cgggggcgacgtgggcggcaacggccggc 11757



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 37       cggnggcgacgtcggcggcaacggccggc 65
                ||| |||||||| ||||||||||||||||
Sbjct: 10761312 cgggggcgacgtgggcggcaacggccggc 10761284



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 37       cggnggcgacgtcggcggcaacggccggc 65
                ||| |||||||| ||||||||||||||||
Sbjct: 14402023 cgggggcgacgtgggcggcaacggccggc 14402051



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>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04,
              complete sequence
          Length = 188209

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 37     cggnggcgacgtcggcggcaacggccggc 65
              ||| |||||||| ||||||||||||||||
Sbjct: 160539 cgggggcgacgtgggcggcaacggccggc 160511



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>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0673E01
          Length = 125909

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 37    cggnggcgacgtcggcggcaacggccggc 65
             ||| |||||||| ||||||||||||||||
Sbjct: 22354 cgggggcgacgtgggcggcaacggccggc 22382



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>gb|AC120985.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1532_D06,
             complete sequence
          Length = 127150

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 37    cggnggcgacgtcggcggcaacggccg 63
             ||| |||||||| ||||||||||||||
Sbjct: 98272 cggcggcgacgtgggcggcaacggccg 98246



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>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01,
             complete sequence
          Length = 126532

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 37    cggnggcgacgtcggcggcaacggccg 63
             ||| |||||||| ||||||||||||||
Sbjct: 21542 cggcggcgacgtgggcggcaacggccg 21568



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>gb|AC145392.2| Mus musculus BAC clone RP24-171E5 from chromosome Y, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 267   tgtccaggattccgccaaagtcac 290
             ||||||||||||| ||||||||||
Sbjct: 94813 tgtccaggattcctccaaagtcac 94836



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>ref|XM_452110.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B13002g predicted mRNA
          Length = 4134

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 atctaagcttgttgatgata 140
           ||||||||||||||||||||
Sbjct: 777 atctaagcttgttgatgata 796



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>gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA, complete cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 237  gcactagactggacagcttggtga 260
            ||||| ||||||||||||||||||
Sbjct: 2185 gcacttgactggacagcttggtga 2208



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>gb|AC095904.7| Rattus norvegicus 9 BAC CH230-10L20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 212732

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 270   ccaggattccgccaaagtcactca 293
             |||||||||| |||||||||||||
Sbjct: 75340 ccaggattcccccaaagtcactca 75363



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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1320834

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     atctaagcttgttgatgata 140
               ||||||||||||||||||||
Sbjct: 1137530 atctaagcttgttgatgata 1137511



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 37       cggnggcgacgtcggcggcaacggccg 63
                ||| |||||||| ||||||||||||||
Sbjct: 21902328 cggcggcgacgtgggcggcaacggccg 21902354



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 37      cggnggcgacgtcggcggcaacggccg 63
               ||| |||||||| ||||||||||||||
Sbjct: 7485203 cggcggcgacgtgggcggcaacggccg 7485177



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>emb|BX813633.1|CNS0AEK0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB29ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1265

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 81  catcatcttcggacccatggatgaaaga 108
           |||| |||||||| ||||||||||||||
Sbjct: 128 catcttcttcggatccatggatgaaaga 155



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>gb|AF270036.1|AF270036 Staphylococcus epidermidis strain SR1 clone step.1043a11 genomic
            sequence
          Length = 3742

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  caagatgcgctttccaactt 336
            ||||||||||||||||||||
Sbjct: 3188 caagatgcgctttccaactt 3169



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>gb|AF269816.1|AF269816 Staphylococcus epidermidis strain SR1 clone step.1024b10 genomic
            sequence
          Length = 3985

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  caagatgcgctttccaactt 336
            ||||||||||||||||||||
Sbjct: 3927 caagatgcgctttccaactt 3908



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>gb|AF269713.1|AF269713 Staphylococcus epidermidis strain SR1 clone step.1018d12 genomic
            sequence
          Length = 3782

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  caagatgcgctttccaactt 336
            ||||||||||||||||||||
Sbjct: 2237 caagatgcgctttccaactt 2218



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>gb|AF269542.1|AF269542 Staphylococcus epidermidis strain SR1 clone step.1008h02 genomic
            sequence
          Length = 3743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  caagatgcgctttccaactt 336
            ||||||||||||||||||||
Sbjct: 3413 caagatgcgctttccaactt 3432



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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    caagatgcgctttccaactt 336
              ||||||||||||||||||||
Sbjct: 168146 caagatgcgctttccaactt 168165



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>dbj|AK109688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E01, full
           insert sequence
          Length = 2015

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 37  cggnggcgacgtcggcggcaacggccg 63
           ||| |||||||| ||||||||||||||
Sbjct: 117 cggcggcgacgtgggcggcaacggccg 91



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      cgtcggcggcaacggccggc 65
               ||||||||||||||||||||
Sbjct: 3687839 cgtcggcggcaacggccggc 3687858



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>gb|AC006584.12|AC006584 Mus musculus  BAC GSMB-407A4 (Genome Systems Mouse BAC Library)
            complete sequence
          Length = 160288

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 267  tgtccaggattccgccaaagtcac 290
            ||||||||||||| ||||||||||
Sbjct: 7851 tgtccaggattcctccaaagtcac 7828



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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    caagatgcgctttccaactt 336
              ||||||||||||||||||||
Sbjct: 283883 caagatgcgctttccaactt 283902



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>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence
          Length = 171720

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   agtcactcactgacaaagagatgc 308
             |||||| |||||||||||||||||
Sbjct: 69564 agtcacccactgacaaagagatgc 69541



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>gb|AC098835.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1732_H01,
            complete sequence
          Length = 85722

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 37   cggnggcgacgtcggcggcaacggccg 63
            ||| |||||||| ||||||||||||||
Sbjct: 4803 cggcggcgacgtgggcggcaacggccg 4777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,773,339
Number of Sequences: 3902068
Number of extensions: 2773339
Number of successful extensions: 49988
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49806
Number of HSP's gapped (non-prelim): 178
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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