>YCX4_CHLVU (O20133) Hypothetical 27.2 kDa protein in rrn23-psbC intergenic|
           region (ORF236)
          Length = 236

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 113 ETKVLPSKAALTNRSKRRSSGNYNHKSNGLNANH 12
           +T+   + AAL NR KRR++   NH +N +N+ H
Sbjct: 167 KTQRQKTNAALINRIKRRNTAFNNHDNNIINSFH 200

>SYV_XYLFT (Q87F36) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 994

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 182 AGTTCANTSTQSDTDSEPAKAQVETKVLPSKAALTNRSKRR 60
           +G T   T T SD+D+  A  Q +T ++P+  A  +R + R
Sbjct: 334 SGATSDTTDTPSDSDASNASNQHDTLIMPAHLAGLDRYEAR 374

>NELFA_DROME (Q86NP2) Negative elongation factor A homolog|
          Length = 1248

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 167 ANTSTQSDTDSEPAKAQVETKV----LPSKAALTNRSKRRSSGNYNHK 36
           A  ++ S  D +P K  VETK+     P  AA  N +   +S N+  K
Sbjct: 383 AQATSTSAADGQPGKPAVETKLKTPRTPKSAAKLNNNNNNNSFNHTPK 430

>DDX31_HUMAN (Q9H8H2) Probable ATP-dependent RNA helicase DDX31 (EC 3.6.1.-)|
           (DEAD box protein 31) (Helicain)
          Length = 851

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 152 QSDTDSEPAKAQVETKVLPSKAALTNRSKRRSSGN 48
           Q+ +++ PAK + ET  LP+K      ++R   GN
Sbjct: 140 QASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGN 174

>YHP7_YEAST (P38809) Protein YHR097C|
          Length = 366

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -3

Query: 176 TTCANTSTQSDTDSEPAKAQVETKVLPSKAALTNRSKRRSSGNYNHKSNGLNANHCAH 3
           T  A+ S+ S++  E   +  E    P + A   + K+RSSG+ +H+ N  +    +H
Sbjct: 51  TRRAHNSSVSNSRQERLPSYEEAAGTPKQQAPYPKEKKRSSGSNSHQHNHHHHRRTSH 108

>SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1486

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 185  RAGTTCANTSTQSDTDSEPAKAQVE 111
            R  +TCAN S   D D EP + + E
Sbjct: 1442 RESSTCANPSPDEDVDEEPVEDEYE 1466


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.121    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,734,003
Number of Sequences: 219361
Number of extensions: 154360
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)