ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal16g08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009431.1| Triticum aestivum clone wlmk1.pk0035.e4:fis, full insert mRNA sequence Length = 1652 Score = 535 bits (270), Expect = e-149 Identities = 332/353 (94%), Gaps = 11/353 (3%) Strand = Plus / Plus Query: 32 gagaggagaggtgcccacg--agctatcggttgcgccgcggcgatgggtagcctgcgagg 89 ||||||||||| |||||| |||| |||||||||||||||| ||||| ||||||||||| Sbjct: 74 gagaggagaggagcccactttagctctcggttgcgccgcggctatggggagcctgcgagg 133 Query: 90 cgga---------gagggaaggaacgaggacggagggaaagtcgggctaccggcgctgga 140 |||| || || ||||||||||||||||||||||| |||||||||||| |||| Sbjct: 134 cggaagcggcggagaagggaggaacgaggacggagggaaagtagggctaccggcgttgga 193 Query: 141 ggtggcgctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccgtgtcgga 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 ggtggcgctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccgtgtcgga 253 Query: 201 ctactaccagcttgatgatttgctgaccgatgaagagaaggcgcttaggaagaaagtccg 260 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 254 ctactaccagcttgatgatttgctgaccggtgaagagaaggcgcttaggaagaaagtccg 313 Query: 261 tgctatttcagagaaagaaattgcacccattatgaccgaatactgggagaaggcagaatt 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 tgctatttcagagaaagaaattgcacccattatgaccgaatactgggagaaggcagaatt 373 Query: 321 cccatttcatgccattccgaaacttgcaactcttggcttagctggaagtacaa 373 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 cccatttcatgccattccgaaacttgcaactcttggcttagctggaagtacaa 426
>ref|XM_475647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 262 bits (132), Expect = 7e-67 Identities = 210/236 (88%) Strand = Plus / Plus Query: 124 gggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctgttc 183 ||||| |||||| |||| || |||||||||||||||||||||||| ||||||||| |||| Sbjct: 40 gggctgccggcgttggacgtcgcgctcgcgttcccgcaggccacgacggcgtcccagttc 99 Query: 184 ccgcccgccgtgtcggactactaccagcttgatgatttgctgaccgatgaagagaaggcg 243 || |||||||| ||||| ||||||||| ||||||||||||| || |||||||||||| | Sbjct: 100 ccacccgccgtatcggattactaccagtttgatgatttgcttactgatgaagagaagaca 159 Query: 244 cttaggaagaaagtccgtgctatttcagagaaagaaattgcacccattatgaccgaatac 303 ||||||||||||||||||| |||| |||| ||||||||||||||||||||| || ||| Sbjct: 160 cttaggaagaaagtccgtggtattatggagagagaaattgcacccattatgacagagtac 219 Query: 304 tgggagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggctt 359 |||||||| |||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 220 tgggagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggctt 275
>dbj|AK071561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O18, full insert sequence Length = 1568 Score = 262 bits (132), Expect = 7e-67 Identities = 210/236 (88%) Strand = Plus / Plus Query: 124 gggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctgttc 183 ||||| |||||| |||| || |||||||||||||||||||||||| ||||||||| |||| Sbjct: 162 gggctgccggcgttggacgtcgcgctcgcgttcccgcaggccacgacggcgtcccagttc 221 Query: 184 ccgcccgccgtgtcggactactaccagcttgatgatttgctgaccgatgaagagaaggcg 243 || |||||||| ||||| ||||||||| ||||||||||||| || |||||||||||| | Sbjct: 222 ccacccgccgtatcggattactaccagtttgatgatttgcttactgatgaagagaagaca 281 Query: 244 cttaggaagaaagtccgtgctatttcagagaaagaaattgcacccattatgaccgaatac 303 ||||||||||||||||||| |||| |||| ||||||||||||||||||||| || ||| Sbjct: 282 cttaggaagaaagtccgtggtattatggagagagaaattgcacccattatgacagagtac 341 Query: 304 tgggagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggctt 359 |||||||| |||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 342 tgggagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggctt 397
>gb|AY107473.1| Zea mays PCO132850 mRNA sequence Length = 1709 Score = 202 bits (102), Expect = 6e-49 Identities = 219/258 (84%) Strand = Plus / Plus Query: 108 ggacggagggaaagtcgggctaccggcgctggaggtggcgctcgcgttcccgcaggccac 167 |||||| || || |||||||| |||||||| || ||| |||||||||||||||||||||| Sbjct: 183 ggacggcggcaaggtcgggctgccggcgcttgacgtgacgctcgcgttcccgcaggccac 242 Query: 168 gccggcgtccctgttcccgcccgccgtgtcggactactaccagcttgatgatttgctgac 227 ||| || || || |||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 243 gcccgcatcgctcttcccgccagccgtttcggactactaccaatttgatgatttgctgac 302 Query: 228 cgatgaagagaaggcgcttaggaagaaagtccgtgctatttcagagaaagaaattgcacc 287 |||||||||||||| || |||||||| ||||| | ||| || || ||||| || || Sbjct: 303 tgatgaagagaaggcactcaggaagaaggtccgaggtatcatggaaaaggaaatcgcgcc 362 Query: 288 cattatgaccgaatactgggagaaggcagaattcccatttcatgccattccgaaacttgc 347 ||||||||| || |||||||||||||| ||||||||||| ||||||||||| | ||||| Sbjct: 363 cattatgactgagtactgggagaaggctgaattcccattccatgccattcccagccttgc 422 Query: 348 aactcttggcttagctgg 365 | |||||| |||||||| Sbjct: 423 cagtcttggtttagctgg 440
>ref|XM_550215.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1979 Score = 113 bits (57), Expect = 4e-22 Identities = 183/225 (81%) Strand = Plus / Plus Query: 121 gtcgggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctg 180 ||||| || ||||||||||| | |||||||||| ||||||||||||||||| ||| | Sbjct: 172 gtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatc 231 Query: 181 ttcccgcccgccgtgtcggactactaccagcttgatgatttgctgaccgatgaagagaag 240 |||||||| | | |||||||| || ||| |||||||||| || ||| ||||||| || Sbjct: 232 ttcccgccatcagcatcggactattatcagattgatgatttactcaccactgaagagcag 291 Query: 241 gcgcttaggaagaaagtccgtgctatttcagagaaagaaattgcacccattatgaccgaa 300 | | |||||||| ||| | ||||| |||||||||||||||||||||||| | Sbjct: 292 tctatcaggaagaatgtcagggctataatggagaaagaaattgcacccattatggcaacg 351 Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaactt 345 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 352 tactgggagaaagcagagttcccatttcatgccattcctaaactt 396
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 113 bits (57), Expect = 4e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 196 tcggactactaccagcttgatgatttgctgaccgatgaagagaaggcgcttaggaagaaa 255 ||||| ||||||||| ||||||||||||| || |||||||||||| | |||||||||||| Sbjct: 95678 tcggattactaccagtttgatgatttgcttactgatgaagagaagacacttaggaagaaa 95619 Query: 256 gtccgtgctatttcagagaaagaaattgcacccattatgac 296 ||||||| |||| |||| ||||||||||||||||||||| Sbjct: 95618 gtccgtggtattatggagagagaaattgcacccattatgac 95578 Score = 83.8 bits (42), Expect = 4e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 124 gggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctgttc 183 ||||| |||||| |||| || |||||||||||||||||||||||| ||||||||| |||| Sbjct: 96922 gggctgccggcgttggacgtcgcgctcgcgttcccgcaggccacgacggcgtcccagttc 96863 Query: 184 ccgcccgccg 193 || ||||||| Sbjct: 96862 ccacccgccg 96853 Score = 77.8 bits (39), Expect = 2e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggctt 359 ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 95346 tactgggagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggctt 95288
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 4e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 196 tcggactactaccagcttgatgatttgctgaccgatgaagagaaggcgcttaggaagaaa 255 ||||| ||||||||| ||||||||||||| || |||||||||||| | |||||||||||| Sbjct: 3673331 tcggattactaccagtttgatgatttgcttactgatgaagagaagacacttaggaagaaa 3673272 Query: 256 gtccgtgctatttcagagaaagaaattgcacccattatgac 296 ||||||| |||| |||| ||||||||||||||||||||| Sbjct: 3673271 gtccgtggtattatggagagagaaattgcacccattatgac 3673231 Score = 83.8 bits (42), Expect = 4e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 124 gggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctgttc 183 ||||| |||||| |||| || |||||||||||||||||||||||| ||||||||| |||| Sbjct: 3674575 gggctgccggcgttggacgtcgcgctcgcgttcccgcaggccacgacggcgtcccagttc 3674516 Query: 184 ccgcccgccg 193 || ||||||| Sbjct: 3674515 ccacccgccg 3674506 Score = 77.8 bits (39), Expect = 2e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggctt 359 ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 3672999 tactgggagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggctt 3672941
>dbj|AK100550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103E08, full insert sequence Length = 1979 Score = 113 bits (57), Expect = 4e-22 Identities = 183/225 (81%) Strand = Plus / Plus Query: 121 gtcgggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctg 180 ||||| || ||||||||||| | |||||||||| ||||||||||||||||| ||| | Sbjct: 172 gtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatc 231 Query: 181 ttcccgcccgccgtgtcggactactaccagcttgatgatttgctgaccgatgaagagaag 240 |||||||| | | |||||||| || ||| |||||||||| || ||| ||||||| || Sbjct: 232 ttcccgccatcagcatcggactattatcagattgatgatttactcaccactgaagagcag 291 Query: 241 gcgcttaggaagaaagtccgtgctatttcagagaaagaaattgcacccattatgaccgaa 300 | | |||||||| ||| | ||||| |||||||||||||||||||||||| | Sbjct: 292 tctatcaggaagaatgtcagggctataatggagaaagaaattgcacccattatggcaacg 351 Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaactt 345 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 352 tactgggagaaagcagagttcccatttcatgccattcctaaactt 396
>gb|AY110040.1| Zea mays CL716_1 mRNA sequence Length = 1802 Score = 67.9 bits (34), Expect = 2e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccgtgtcggactactac 207 ||||||||||||||||||||||| || ||| | |||||||| ||| ||||| || ||| Sbjct: 188 ctcgcgttcccgcaggccacgcctgcctccattttcccgccgtccgcttcggattattac 247 Query: 208 cagcttgatgatttgctgaccgatgaagag 237 ||| |||||||||||||||| ||||||| Sbjct: 248 cagtctgatgatttgctgaccagtgaagag 277
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaactt 345 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 3110872 tactgggagaaagcagagttcccatttcatgccattcctaaactt 3110828 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 121 gtcgggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctg 180 ||||| || ||||||||||| | |||||||||| ||||||||||||||||| ||| | Sbjct: 3112644 gtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatc 3112585 Query: 181 ttcccgcc 188 |||||||| Sbjct: 3112584 ttcccgcc 3112577 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 271 gagaaagaaattgcacccattatg 294 |||||||||||||||||||||||| Sbjct: 3111198 gagaaagaaattgcacccattatg 3111175
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaactt 345 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 54660 tactgggagaaagcagagttcccatttcatgccattcctaaactt 54616 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 121 gtcgggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctg 180 ||||| || ||||||||||| | |||||||||| ||||||||||||||||| ||| | Sbjct: 56432 gtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatc 56373 Query: 181 ttcccgcc 188 |||||||| Sbjct: 56372 ttcccgcc 56365 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 271 gagaaagaaattgcacccattatg 294 |||||||||||||||||||||||| Sbjct: 54986 gagaaagaaattgcacccattatg 54963
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 301 tactgggagaaggcagaattcccatttcatgccattccgaaactt 345 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 78912 tactgggagaaagcagagttcccatttcatgccattcctaaactt 78868 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 121 gtcgggctaccggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtccctg 180 ||||| || ||||||||||| | |||||||||| ||||||||||||||||| ||| | Sbjct: 80684 gtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatc 80625 Query: 181 ttcccgcc 188 |||||||| Sbjct: 80624 ttcccgcc 80617 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 271 gagaaagaaattgcacccattatg 294 |||||||||||||||||||||||| Sbjct: 79238 gagaaagaaattgcacccattatg 79215
>ref|NM_115043.2| Arabidopsis thaliana ACX4 (ACYL-COA OXIDASE 4); oxidoreductase AT3G51840 (ACX4) mRNA, complete cds Length = 1759 Score = 48.1 bits (24), Expect = 0.020 Identities = 48/56 (85%) Strand = Plus / Plus Query: 271 gagaaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 326 ||||||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 366 gagaaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 421
>gb|AY125536.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1311 Score = 48.1 bits (24), Expect = 0.020 Identities = 48/56 (85%) Strand = Plus / Plus Query: 271 gagaaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 326 ||||||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 211 gagaaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 266
>gb|AY094441.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1718 Score = 48.1 bits (24), Expect = 0.020 Identities = 48/56 (85%) Strand = Plus / Plus Query: 271 gagaaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 326 ||||||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 366 gagaaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 421
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/46 (89%), Gaps = 3/46 (6%) Strand = Plus / Minus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccg 193 ||||||||||||||||||| || |||||| |||||||||||||| Sbjct: 11904453 ctcgcgttcccgcaggcca---cgacgtcccagttcccgcccgccg 11904411
>gb|AY087793.1| Arabidopsis thaliana clone 3844 mRNA, complete sequence Length = 1626 Score = 48.1 bits (24), Expect = 0.020 Identities = 48/56 (85%) Strand = Plus / Plus Query: 271 gagaaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 326 ||||||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 269 gagaaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 324
>dbj|AB017643.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds Length = 1593 Score = 48.1 bits (24), Expect = 0.020 Identities = 48/56 (85%) Strand = Plus / Plus Query: 271 gagaaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 326 ||||||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 250 gagaaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 305
>dbj|AK105662.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H04, full insert sequence Length = 1514 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/46 (89%), Gaps = 3/46 (6%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccg 193 ||||||||||||||||||| || |||||| |||||||||||||| Sbjct: 889 ctcgcgttcccgcaggcca---cgacgtcccagttcccgcccgccg 931
>dbj|AK103895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150G10, full insert sequence Length = 1716 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/46 (89%), Gaps = 3/46 (6%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccg 193 ||||||||||||||||||| || |||||| |||||||||||||| Sbjct: 984 ctcgcgttcccgcaggcca---cgacgtcccagttcccgcccgccg 1026
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.020 Identities = 41/46 (89%), Gaps = 3/46 (6%) Strand = Plus / Minus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcccgcccgccg 193 ||||||||||||||||||| || |||||| |||||||||||||| Sbjct: 11904124 ctcgcgttcccgcaggcca---cgacgtcccagttcccgcccgccg 11904082
>gb|U72505.1|ATU72505 Arabidopsis thaliana putative acyl-coA dehydrogenase G6p (AtG6) mRNA, complete cds Length = 1579 Score = 48.1 bits (24), Expect = 0.020 Identities = 48/56 (85%) Strand = Plus / Plus Query: 271 gagaaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 326 ||||||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 236 gagaaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 291
>ref|XM_482164.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 132 ggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtcc 177 |||| |||| || |||||| ||||||||||||||||| ||||||| Sbjct: 528 ggcgttggacgtcgcgctcacgttcccgcaggccacgatggcgtcc 573
>emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chromosome Xq21.33-23, complete sequence Length = 112328 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 265 atttcagagaaagaaattgcacccat 290 ||||||||||||||||||||| |||| Sbjct: 76985 atttcagagaaagaaattgcagccat 76960
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 132 ggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtcc 177 |||| |||| || |||||| ||||||||||||||||| ||||||| Sbjct: 18276729 ggcgttggacgtcgcgctcacgttcccgcaggccacgatggcgtcc 18276774 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 4966377 ctcgctttcccgcaggccacaacggcgtcccagttcc 4966341
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 132 ggcgctggaggtggcgctcgcgttcccgcaggccacgccggcgtcc 177 |||| |||| || |||||| ||||||||||||||||| ||||||| Sbjct: 99041 ggcgttggacgtcgcgctcacgttcccgcaggccacgatggcgtcc 99086
>ref|XM_477124.1| Oryza sativa (japonica cultivar-group), mRNA Length = 756 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 cgcaggccacgccggcgtccctgtt 182 ||||||||||| ||||||||||||| Sbjct: 118 cgcaggccacgacggcgtccctgtt 94
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgcaggccacgccggcgtccctgtt 182 ||||||||||| ||||||||||||| Sbjct: 6026222 cgcaggccacgacggcgtccctgtt 6026246
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ggcgctggaggtggcgctcgc 152 ||||||||||||||||||||| Sbjct: 1837629 ggcgctggaggtggcgctcgc 1837609 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ggcgctggaggtggcgctcg 151 |||||||||||||||||||| Sbjct: 4723188 ggcgctggaggtggcgctcg 4723169
>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0547A06 Length = 150922 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 3934 ctcgctttcccgcaggccacaacggcgtcccagttcc 3898
>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008C11 Length = 157205 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgcaggccacgccggcgtccctgtt 182 ||||||||||| ||||||||||||| Sbjct: 81392 cgcaggccacgacggcgtccctgtt 81416
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1122_A12 Length = 149011 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 125631 ctcgctttcccgcaggccacaacggcgtcccagttcc 125595
>dbj|AK104021.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-D04, full insert sequence Length = 889 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 754 ctcgctttcccgcaggccacaacggcgtcccagttcc 790
>dbj|AK072453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119K08, full insert sequence Length = 2293 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 802 ctcgctttcccgcaggccacaacggcgtcccagttcc 838
>dbj|AK071706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F07, full insert sequence Length = 1687 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 804 ctcgctttcccgcaggccacaacggcgtcccagttcc 840
>dbj|AK066827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C16, full insert sequence Length = 929 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 ctcgcgttcccgcaggccacgccggcgtccctgttcc 184 ||||| |||||||||||||| ||||||||| ||||| Sbjct: 796 ctcgctttcccgcaggccacaacggcgtcccagttcc 832
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 ccggcgtccctgttcccgccc 189 ||||||||||||||||||||| Sbjct: 501745 ccggcgtccctgttcccgccc 501765
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccggcgctggaggtggcgct 149 |||||||||||||||||||| Sbjct: 425643 ccggcgctggaggtggcgct 425662
>ref|XM_469899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3159 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ccggcgctggaggtggcgctcgcg 153 ||||||||||||| |||||||||| Sbjct: 343 ccggcgctggaggaggcgctcgcg 366
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ccggcgctggaggtggcgctcgcg 153 ||||||||||||| |||||||||| Sbjct: 31414952 ccggcgctggaggaggcgctcgcg 31414975
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gctgaccgatgaagagaaggcgct 245 |||||||||||| ||||||||||| Sbjct: 746861 gctgaccgatgacgagaaggcgct 746838
>emb|CR685130.1|CNS0FRLI Tetraodon nigroviridis full-length cDNA Length = 1069 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 277 agaggagaggtgcccacgag 258
>emb|CR677575.2|CNS0FLS2 Tetraodon nigroviridis full-length cDNA Length = 920 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 118 agaggagaggtgcccacgag 99
>emb|CR677780.2|CNS0FLXO Tetraodon nigroviridis full-length cDNA Length = 913 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 110 agaggagaggtgcccacgag 91
>emb|CR668623.1|CNS0FEVP Tetraodon nigroviridis full-length cDNA Length = 914 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 119 agaggagaggtgcccacgag 100
>emb|CR667853.2|CNS0FEAB Tetraodon nigroviridis full-length cDNA Length = 919 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 125 agaggagaggtgcccacgag 106
>emb|CR667483.2|CNS0FE01 Tetraodon nigroviridis full-length cDNA Length = 913 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 119 agaggagaggtgcccacgag 100
>emb|CR666309.2|CNS0FD3F Tetraodon nigroviridis full-length cDNA Length = 1121 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 agaggagaggtgcccacgag 52 |||||||||||||||||||| Sbjct: 118 agaggagaggtgcccacgag 99
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ccggcgctggaggtggcgctcgcg 153 ||||||||||||| |||||||||| Sbjct: 80848 ccggcgctggaggaggcgctcgcg 80825
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tcccgcccgccgtgtcggac 201 |||||||||||||||||||| Sbjct: 1412058 tcccgcccgccgtgtcggac 1412077
>gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosome 9, complete sequence Length = 154654 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gaatactgggagaaggcaga 317 |||||||||||||||||||| Sbjct: 99164 gaatactgggagaaggcaga 99183
>dbj|AK032700.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720404F23 product:unclassifiable, full insert sequence Length = 1325 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 89 gcggagagggaaggaacgaggacggagg 116 |||||||||||||||| ||||| ||||| Sbjct: 626 gcggagagggaaggaatgaggatggagg 599
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ccggcgctggaggtggcgctcgcg 153 ||||||||||||| |||||||||| Sbjct: 31505468 ccggcgctggaggaggcgctcgcg 31505491
>ref|NM_212096.1| Eremothecium gossypii AGR368Wp (AGR368W), mRNA Length = 759 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tcccgcccgccgtgtcggac 201 |||||||||||||||||||| Sbjct: 668 tcccgcccgccgtgtcggac 687
>gb|AC113178.10| Mus musculus chromosome 15, clone RP23-395K11, complete sequence Length = 198803 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 gcggagagggaaggaacgaggacggagg 116 |||||||||||||||| ||||| ||||| Sbjct: 104938 gcggagagggaaggaatgaggatggagg 104965
>emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2525P14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209242 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agcttgatgatttgctgacc 228 |||||||||||||||||||| Sbjct: 25510 agcttgatgatttgctgacc 25529
>emb|AL133445.4|CNS01DV1 Human chromosome 14 DNA sequence BAC R-1046B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190946 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 agcttgatgatttgctgacc 228 |||||||||||||||||||| Sbjct: 8853 agcttgatgatttgctgacc 8834 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,944,218 Number of Sequences: 3902068 Number of extensions: 2944218 Number of successful extensions: 49073 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48635 Number of HSP's gapped (non-prelim): 429 length of query: 373 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 351 effective length of database: 17,147,199,772 effective search space: 6018667119972 effective search space used: 6018667119972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
