| Clone Name | baal16g01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072412.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086C01, full insert sequence Length = 2306 Score = 468 bits (236), Expect = e-129 Identities = 421/482 (87%), Gaps = 3/482 (0%) Strand = Plus / Plus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 475 aaaccctgattatgaacctacagagcttggttcatttcatgctgtggcacctcctggagc 534 Query: 70 agatttgaggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggagg 129 |||||| ||||||| |||||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 535 agatttaaggctagcagatgcacacaagatatctattgagaaaagcaaatatctcggagg 594 Query: 130 tgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagtacg 189 ||||||||| ||||| |||||||||||||| ||||| | ||||||||| |||||||||| Sbjct: 595 tgatctggaacatacacatttggtcaaaggcttggactatgctctacttcacaaagtacg 654 Query: 190 tagtgaaattgacaagaagcctgatgcagaggatgggaaggatgccaaggcgagggaaac 249 |||||||| || ||||||||||| ||||| ||||| |||||| | || | ||| || Sbjct: 655 aagtgaaatagaaaagaagcctgaagcagaagatggaaaggatacacagtcaaggtctac 714 Query: 250 aaaagaagaccgagcagtctcattccgcactgcaattgcaaagtctgtctaccagtggac 309 ||||||||| | |||||||||||||||||||||| ||||||||||||||| || |||| Sbjct: 715 aaaagaagatcaagcagtctcattccgcactgcagctgcaaagtctgtctatcaatggat 774 Query: 310 tgtaaagcaacaacaaagcatgataaaggcgaatgacatgtttcttcctggccggatggc 369 ||||| | ||||||||| |||||| ||||||| |||||||||||||| |||||||| Sbjct: 775 cataaag---ccacaaagcatcataaagtcgaatgaaatgtttcttcctggtcggatggc 831 Query: 370 atttatttacaatatggaggatggacttaacagtgatattccaacgactcttcacaggag 429 |||||||||||| |||||||||||||||| || ||||||||| || || ||||||||||| Sbjct: 832 atttatttacaacatggaggatggacttaccaatgatattccgacaacacttcacaggag 891 Query: 430 taaagctgattgccctgtcccagaggaaatggtcactgtcagcgtggatggctctgtact 489 |||||||||||| |||| |||||||| ||||| |||||||| |||||||| |||||||| Sbjct: 892 caaagctgattgctctgttccagaggagatggtaactgtcagtgtggatggttctgtact 951 Query: 490 tg 491 || Sbjct: 952 tg 953
>dbj|AK065900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D09, full insert sequence Length = 1171 Score = 468 bits (236), Expect = e-129 Identities = 421/482 (87%), Gaps = 3/482 (0%) Strand = Plus / Plus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 475 aaaccctgattatgaacctacagagcttggttcatttcatgctgtggcacctcctggagc 534 Query: 70 agatttgaggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggagg 129 |||||| ||||||| |||||| || ||||| || ||||||||||||||||| || ||||| Sbjct: 535 agatttaaggctagcagatgcacacaagatatctattgagaaaagcaaatatctcggagg 594 Query: 130 tgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagtacg 189 ||||||||| ||||| |||||||||||||| ||||| | ||||||||| |||||||||| Sbjct: 595 tgatctggaacatacacatttggtcaaaggcttggactatgctctacttcacaaagtacg 654 Query: 190 tagtgaaattgacaagaagcctgatgcagaggatgggaaggatgccaaggcgagggaaac 249 |||||||| || ||||||||||| ||||| ||||| |||||| | || | ||| || Sbjct: 655 aagtgaaatagaaaagaagcctgaagcagaagatggaaaggatacacagtcaaggtctac 714 Query: 250 aaaagaagaccgagcagtctcattccgcactgcaattgcaaagtctgtctaccagtggac 309 ||||||||| | |||||||||||||||||||||| ||||||||||||||| || |||| Sbjct: 715 aaaagaagatcaagcagtctcattccgcactgcagctgcaaagtctgtctatcaatggat 774 Query: 310 tgtaaagcaacaacaaagcatgataaaggcgaatgacatgtttcttcctggccggatggc 369 ||||| | ||||||||| |||||| ||||||| |||||||||||||| |||||||| Sbjct: 775 cataaag---ccacaaagcatcataaagtcgaatgaaatgtttcttcctggtcggatggc 831 Query: 370 atttatttacaatatggaggatggacttaacagtgatattccaacgactcttcacaggag 429 |||||||||||| |||||||||||||||| || ||||||||| || || ||||||||||| Sbjct: 832 atttatttacaacatggaggatggacttaccaatgatattccgacaacacttcacaggag 891 Query: 430 taaagctgattgccctgtcccagaggaaatggtcactgtcagcgtggatggctctgtact 489 |||||||||||| |||| |||||||| ||||| |||||||| |||||||| |||||||| Sbjct: 892 caaagctgattgctctgttccagaggagatggtaactgtcagtgtggatggttctgtact 951 Query: 490 tg 491 || Sbjct: 952 tg 953
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 127 aggtgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagt 186 ||||||| |||| ||||| |||||||||||||| ||||| | ||||||||| ||||||| Sbjct: 2132338 aggtgatttggaacatacacatttggtcaaaggtttggactatgctctacttcacaaagt 2132279 Query: 187 acgtagtgaaattgacaagaagcctgatgcagaggatgggaaggat 232 ||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 2132278 acgaagtgaaatagaaaagaagcctgatgcagaggatgggaaggat 2132233 Score = 107 bits (54), Expect = 3e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 2133068 aaaccttgactatgaacctacagagcttggttcatttcatgctgtggcacctcccggagc 2133009 Query: 70 agattt 75 |||||| Sbjct: 2133008 agattt 2133003 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || |||||||||||||| |||||||||||||| Sbjct: 2033098 ggaggatggacttaccaatgatattccgacaactcttcacaggagcaaagctgattgccc 2033039 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 2033038 tgttccagagg 2033028 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || |||||| ||||| |||||||||||||| |||||||||||| | Sbjct: 2130197 ggaggatggacttaccaatgatatcccaacaactcttcacaggagcaaagctgattgcgc 2130138 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 2130137 tgttccagagg 2130127 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctgga 67 |||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 2035367 aaaccccgagtatgaacatacagagcttggttcatttcatgctgtggcacctcctgga 2035310 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct: 2131068 acaaagcatcataaagtagaatgaaatgtttcttcctggtcggatggcatttatttacaa 2131009 Query: 382 tatgg 386 |||| Sbjct: 2131008 catgg 2131004 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 247 aacaaaagaagaccgagcagtctcattccgcactgcaattgcaaag 292 |||||||||||| | |||||||||||||||||||||| ||||||| Sbjct: 2131235 aacaaaagaagatcaggcagtctcattccgcactgcaactgcaaag 2131190 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 77 aggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggaggt 130 ||||||| ||||| || ||||| || ||||||||||||||||| ||||||||| Sbjct: 2132905 aggctagcagatgtacacaagatatctattgagaaaagcaaatatcttggaggt 2132852 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||| ||| ||||||||| || ||| ||||||||||||| Sbjct: 2033685 acaaagcatcataaagttaaatgaaatgcttcttcctgatcgcatgacatttatttacaa 2033626 Query: 382 tatgg 386 ||||| Sbjct: 2033625 tatgg 2033621
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 127 aggtgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagt 186 ||||||| |||| ||||| |||||||||||||| ||||| | ||||||||| ||||||| Sbjct: 2132282 aggtgatttggaacatacacatttggtcaaaggtttggactatgctctacttcacaaagt 2132223 Query: 187 acgtagtgaaattgacaagaagcctgatgcagaggatgggaaggat 232 ||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 2132222 acgaagtgaaatagaaaagaagcctgatgcagaggatgggaaggat 2132177 Score = 107 bits (54), Expect = 3e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 2133012 aaaccttgactatgaacctacagagcttggttcatttcatgctgtggcacctcccggagc 2132953 Query: 70 agattt 75 |||||| Sbjct: 2132952 agattt 2132947 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || |||||||||||||| |||||||||||||| Sbjct: 2033049 ggaggatggacttaccaatgatattccgacaactcttcacaggagcaaagctgattgccc 2032990 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 2032989 tgttccagagg 2032979 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || |||||| ||||| |||||||||||||| |||||||||||| | Sbjct: 2130141 ggaggatggacttaccaatgatatcccaacaactcttcacaggagcaaagctgattgcgc 2130082 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 2130081 tgttccagagg 2130071 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctgga 67 |||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 2035318 aaaccccgagtatgaacatacagagcttggttcatttcatgctgtggcacctcctgga 2035261 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct: 2131012 acaaagcatcataaagtagaatgaaatgtttcttcctggtcggatggcatttatttacaa 2130953 Query: 382 tatgg 386 |||| Sbjct: 2130952 catgg 2130948 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 247 aacaaaagaagaccgagcagtctcattccgcactgcaattgcaaag 292 |||||||||||| | |||||||||||||||||||||| ||||||| Sbjct: 2131179 aacaaaagaagatcaggcagtctcattccgcactgcaactgcaaag 2131134 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 77 aggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggaggt 130 ||||||| ||||| || ||||| || ||||||||||||||||| ||||||||| Sbjct: 2132849 aggctagcagatgtacacaagatatctattgagaaaagcaaatatcttggaggt 2132796 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||| ||| ||||||||| || ||| ||||||||||||| Sbjct: 2033636 acaaagcatcataaagttaaatgaaatgcttcttcctgatcgcatgacatttatttacaa 2033577 Query: 382 tatgg 386 ||||| Sbjct: 2033576 tatgg 2033572
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 127 aggtgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagt 186 ||||||| |||| ||||| |||||||||||||| ||||| | ||||||||| ||||||| Sbjct: 14562 aggtgatttggaacatacacatttggtcaaaggtttggactatgctctacttcacaaagt 14503 Query: 187 acgtagtgaaattgacaagaagcctgatgcagaggatgggaaggat 232 ||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 14502 acgaagtgaaatagaaaagaagcctgatgcagaggatgggaaggat 14457 Score = 107 bits (54), Expect = 3e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 15292 aaaccttgactatgaacctacagagcttggttcatttcatgctgtggcacctcccggagc 15233 Query: 70 agattt 75 |||||| Sbjct: 15232 agattt 15227 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || |||||| ||||| |||||||||||||| |||||||||||| | Sbjct: 12421 ggaggatggacttaccaatgatatcccaacaactcttcacaggagcaaagctgattgcgc 12362 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 12361 tgttccagagg 12351 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct: 13292 acaaagcatcataaagtagaatgaaatgtttcttcctggtcggatggcatttatttacaa 13233 Query: 382 tatgg 386 |||| Sbjct: 13232 catgg 13228 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 247 aacaaaagaagaccgagcagtctcattccgcactgcaattgcaaag 292 |||||||||||| | |||||||||||||||||||||| ||||||| Sbjct: 13459 aacaaaagaagatcaggcagtctcattccgcactgcaactgcaaag 13414 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 77 aggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggaggt 130 ||||||| ||||| || ||||| || ||||||||||||||||| ||||||||| Sbjct: 15129 aggctagcagatgtacacaagatatctattgagaaaagcaaatatcttggaggt 15076
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence Length = 185449 Score = 115 bits (58), Expect = 1e-22 Identities = 64/66 (96%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 171592 aaaccctgattatgaacctacagagcttggttcatttcatgctgtggcacctcctggagc 171533 Query: 70 agattt 75 |||||| Sbjct: 171532 agattt 171527 Score = 107 bits (54), Expect = 3e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 127 aggtgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagt 186 |||||||||||| ||||| |||||||||||||| ||||| | ||||||||| ||||||| Sbjct: 170856 aggtgatctggaacatacacatttggtcaaaggcttggactatgctctacttcacaaagt 170797 Query: 187 acgtagtgaaattgacaagaagcctgatgcagaggatgggaaggat 232 ||| |||||||| || ||||||||||| ||||| ||||| |||||| Sbjct: 170796 acgaagtgaaatagaaaagaagcctgaagcagaagatggaaaggat 170751 Score = 89.7 bits (45), Expect = 8e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 169957 acaaagcatcataaagtcgaatgaaatgtttcttcctggtcggatggcatttatttacaa 169898 Query: 382 tatgg 386 |||| Sbjct: 169897 catgg 169893 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || || ||||||||||| |||||||||||| | Sbjct: 169104 ggaggatggacttaccaatgatattccgacaacacttcacaggagcaaagctgattgctc 169045 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 169044 tgttccagagg 169034 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 248 acaaaagaagaccgagcagtctcattccgcactgcaattgcaaag 292 ||||||||||| | |||||||||||||||||||||| ||||||| Sbjct: 170135 acaaaagaagatcaagcagtctcattccgcactgcagctgcaaag 170091 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 77 aggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggaggt 130 ||||||| |||||| || ||||| || ||||||||||||||||| || |||||| Sbjct: 171429 aggctagcagatgcacacaagatatctattgagaaaagcaaatatctcggaggt 171376
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 115 bits (58), Expect = 1e-22 Identities = 64/66 (96%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2100037 aaaccctgattatgaacctacagagcttggttcatttcatgctgtggcacctcctggagc 2099978 Query: 70 agattt 75 |||||| Sbjct: 2099977 agattt 2099972 Score = 107 bits (54), Expect = 3e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 127 aggtgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagt 186 |||||||||||| ||||| |||||||||||||| ||||| | ||||||||| ||||||| Sbjct: 2099301 aggtgatctggaacatacacatttggtcaaaggcttggactatgctctacttcacaaagt 2099242 Query: 187 acgtagtgaaattgacaagaagcctgatgcagaggatgggaaggat 232 ||| |||||||| || ||||||||||| ||||| ||||| |||||| Sbjct: 2099241 acgaagtgaaatagaaaagaagcctgaagcagaagatggaaaggat 2099196 Score = 89.7 bits (45), Expect = 8e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 2098402 acaaagcatcataaagtcgaatgaaatgtttcttcctggtcggatggcatttatttacaa 2098343 Query: 382 tatgg 386 |||| Sbjct: 2098342 catgg 2098338 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || || ||||||||||| |||||||||||| | Sbjct: 2097549 ggaggatggacttaccaatgatattccgacaacacttcacaggagcaaagctgattgctc 2097490 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 2097489 tgttccagagg 2097479 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 248 acaaaagaagaccgagcagtctcattccgcactgcaattgcaaag 292 ||||||||||| | |||||||||||||||||||||| ||||||| Sbjct: 2098580 acaaaagaagatcaagcagtctcattccgcactgcagctgcaaag 2098536 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 77 aggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggaggt 130 ||||||| |||||| || ||||| || ||||||||||||||||| || |||||| Sbjct: 2099874 aggctagcagatgcacacaagatatctattgagaaaagcaaatatctcggaggt 2099821
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 115 bits (58), Expect = 1e-22 Identities = 64/66 (96%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctggagc 69 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2107818 aaaccctgattatgaacctacagagcttggttcatttcatgctgtggcacctcctggagc 2107759 Query: 70 agattt 75 |||||| Sbjct: 2107758 agattt 2107753 Score = 107 bits (54), Expect = 3e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 127 aggtgatctggagcatactcatttggtcaaagggttggattttgctctactaaacaaagt 186 |||||||||||| ||||| |||||||||||||| ||||| | ||||||||| ||||||| Sbjct: 2107082 aggtgatctggaacatacacatttggtcaaaggcttggactatgctctacttcacaaagt 2107023 Query: 187 acgtagtgaaattgacaagaagcctgatgcagaggatgggaaggat 232 ||| |||||||| || ||||||||||| ||||| ||||| |||||| Sbjct: 2107022 acgaagtgaaatagaaaagaagcctgaagcagaagatggaaaggat 2106977 Score = 89.7 bits (45), Expect = 8e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 2106183 acaaagcatcataaagtcgaatgaaatgtttcttcctggtcggatggcatttatttacaa 2106124 Query: 382 tatgg 386 |||| Sbjct: 2106123 catgg 2106119 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || || ||||||||||| |||||||||||| | Sbjct: 2105330 ggaggatggacttaccaatgatattccgacaacacttcacaggagcaaagctgattgctc 2105271 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 2105270 tgttccagagg 2105260 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 248 acaaaagaagaccgagcagtctcattccgcactgcaattgcaaag 292 ||||||||||| | |||||||||||||||||||||| ||||||| Sbjct: 2106361 acaaaagaagatcaagcagtctcattccgcactgcagctgcaaag 2106317 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 77 aggctagaagatgcccaaaagatttcaattgagaaaagcaaataccttggaggt 130 ||||||| |||||| || ||||| || ||||||||||||||||| || |||||| Sbjct: 2107655 aggctagcagatgcacacaagatatctattgagaaaagcaaatatctcggaggt 2107602
>dbj|AK121490.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150L13, full insert sequence Length = 4670 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || |||||||||||||| |||||||||||||| Sbjct: 2658 ggaggatggacttaccaatgatattccgacaactcttcacaggagcaaagctgattgccc 2717 Query: 445 tgtcccagagga 456 ||| |||||||| Sbjct: 2718 tgttccagagga 2729 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctgga 67 |||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 928 aaaccccgagtatgaacatacagagcttggttcatttcatgctgtggcacctcctgga 985 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||| ||| ||||||||| || ||| ||||||||||||| Sbjct: 2071 acaaagcatcataaagttaaatgaaatgcttcttcctgatcgcatgacatttatttacaa 2130 Query: 382 tatgg 386 ||||| Sbjct: 2131 tatgg 2135
>emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa0028B04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158885 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 385 ggaggatggacttaacagtgatattccaacgactcttcacaggagtaaagctgattgccc 444 |||||||||||||| || ||||||||| || |||||||||||||| |||||||||||||| Sbjct: 63991 ggaggatggacttaccaatgatattccgacaactcttcacaggagcaaagctgattgccc 63932 Query: 445 tgtcccagagg 455 ||| ||||||| Sbjct: 63931 tgttccagagg 63921 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 10 aaaccctgactatgaacctacagagcttggttcgtttcatgctgtggcacctcctgga 67 |||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 66260 aaaccccgagtatgaacatacagagcttggttcatttcatgctgtggcacctcctgga 66203 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 322 acaaagcatgataaaggcgaatgacatgtttcttcctggccggatggcatttatttacaa 381 ||||||||| |||||| ||||| ||| ||||||||| || ||| ||||||||||||| Sbjct: 64578 acaaagcatcataaagttaaatgaaatgcttcttcctgatcgcatgacatttatttacaa 64519 Query: 382 tatgg 386 ||||| Sbjct: 64518 tatgg 64514
>gb|BT013452.1| Lycopersicon esculentum clone 132108R, mRNA sequence Length = 1826 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 104 attgagaaaagcaaataccttggaggtgatctggagcatactcatttggtcaaagggttg 163 |||||||| ||||| || |||||||||||| |||| ||||| |||||||| |||||||| Sbjct: 250 attgagaagagcaagtatcttggaggtgatgtggaacatacacatttggttaaagggtta 309 Query: 164 gattttgctctactaaacaaagtacgtagtgaaattgacaagaagcc 210 |||| |||| | || ||||||| | |||||||| || |||||||| Sbjct: 310 gattatgctttgcttcacaaagtgagaagtgaaatagataagaagcc 356 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Plus Query: 347 atgtttcttcctggccggatggcatttatttacaatatggaggatggacttaacagtgat 406 |||||||||||||| |||||||| ||||||| |||||||| |||| || |||| Sbjct: 493 atgtttcttcctggacggatggcttttatttttaatatggatagtggatactccaatgat 552 Query: 407 attccaacgactcttcacaggagtaaagctgattgccctgtcccagaggaaatggtcact 466 ||||| || ||||| ||||| || |||||||| || || |||| ||||||||||| || Sbjct: 553 attcctacaactctacacagaagcaaagctgactgtccagtcctcgaggaaatggttaca 612 Query: 467 gtcagcgtggatggctctgt 486 ||||| || ||||| ||||| Sbjct: 613 gtcagtgttgatggttctgt 632
>ref|XM_843700.1| PREDICTED: Canis familiaris similar to RED protein (LOC607109), mRNA Length = 1906 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 135 tggagcatactcatttggtcaaagggttggattttgctct 174 |||| |||||||||||||| |||||||||||||||||||| Sbjct: 556 tggaacatactcatttggtgaaagggttggattttgctct 595
>ref|XM_394867.2| PREDICTED: Apis mellifera similar to ENSANGP00000017679 (LOC411393), mRNA Length = 1831 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 135 tggagcatactcatttggtcaaagggttggattttgctctactaaacaaagtacgtagtg 194 ||||||| |||||||| || ||||| ||||||| |||||| || | ||||||||||||| Sbjct: 563 tggagcacactcatttagtaaaaggattggattatgctcttcttcaaaaagtacgtagtg 622 Query: 195 aaat 198 |||| Sbjct: 623 aaat 626
>ref|NM_199589.1| Danio rerio IK cytokine (ik), mRNA Length = 2082 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgctct 174 |||||| ||||||| ||||| ||||| || ||||||||||||||||| Sbjct: 530 ggtgatatggagcacactcacttggtgaaggggttggattttgctct 576
>gb|BC049322.1| Danio rerio IK cytokine, mRNA (cDNA clone MGC:56500 IMAGE:5777425), complete cds Length = 2082 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgctct 174 |||||| ||||||| ||||| ||||| || ||||||||||||||||| Sbjct: 530 ggtgatatggagcacactcacttggtgaaggggttggattttgctct 576
>ref|NM_128203.1| Arabidopsis thaliana unknown protein AT2G26460 mRNA, complete cds Length = 1935 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 95 aagatttcaattgagaaaagcaaataccttggaggtgatctggagcatactcatttggtc 154 ||||| || |||||||| |||||||| |||||||||||| | || ||||| ||||| || Sbjct: 265 aagatatctattgagaacagcaaatatcttggaggtgatgttgaacatacccatttagtt 324 Query: 155 aaagggttggattttgct 172 || || ||||||| |||| Sbjct: 325 aagggtttggattatgct 342
>gb|BT012549.1| Arabidopsis thaliana At2g26460 gene, complete cds Length = 1758 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 95 aagatttcaattgagaaaagcaaataccttggaggtgatctggagcatactcatttggtc 154 ||||| || |||||||| |||||||| |||||||||||| | || ||||| ||||| || Sbjct: 205 aagatatctattgagaacagcaaatatcttggaggtgatgttgaacatacccatttagtt 264 Query: 155 aaagggttggattttgct 172 || || ||||||| |||| Sbjct: 265 aagggtttggattatgct 282
>gb|BT011249.1| Arabidopsis thaliana At2g26460 mRNA, complete cds Length = 1884 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 95 aagatttcaattgagaaaagcaaataccttggaggtgatctggagcatactcatttggtc 154 ||||| || |||||||| |||||||| |||||||||||| | || ||||| ||||| || Sbjct: 258 aagatatctattgagaacagcaaatatcttggaggtgatgttgaacatacccatttagtt 317 Query: 155 aaagggttggattttgct 172 || || ||||||| |||| Sbjct: 318 aagggtttggattatgct 335
>emb|BX820686.1|CNS0A9MR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1961 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 95 aagatttcaattgagaaaagcaaataccttggaggtgatctggagcatactcatttggtc 154 ||||| || |||||||| |||||||| |||||||||||| | || ||||| ||||| || Sbjct: 300 aagatatctattgagaacagcaaatatcttggaggtgatgttgaacatacccatttagtt 359 Query: 155 aaagggttggattttgct 172 || || ||||||| |||| Sbjct: 360 aagggtttggattatgct 377
>ref|NM_062158.2| Caenorhabditis elegans Suppressor of Mec and Unc defects family member (smu-2) (smu-2) mRNA, complete cds Length = 1771 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 116 aaataccttggaggtgatctggagcatactcatttggtcaaagggttggattttgctcta 175 ||||| |||||||| ||| ||||||| ||||| ||||||||||| | |||| | | || Sbjct: 474 aaatatcttggaggagatttggagcacactcacttggtcaaaggtctcgattattcgctt 533 Query: 176 ctaaacaaagtacgtagtgaaattgacaa 204 | |||||||| || |||||||||||||| Sbjct: 534 ttgaacaaagttcgaagtgaaattgacaa 562
>gb|AC006790.2| Caenorhabditis elegans cosmid Y49F6B, complete sequence Length = 52139 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 116 aaataccttggaggtgatctggagcatactcatttggtcaaagggttggattttgctcta 175 ||||| |||||||| ||| ||||||| ||||| ||||||||||| | |||| | | || Sbjct: 17256 aaatatcttggaggagatttggagcacactcacttggtcaaaggtctcgattattcgctt 17315 Query: 176 ctaaacaaagtacgtagtgaaattgacaa 204 | |||||||| || |||||||||||||| Sbjct: 17316 ttgaacaaagttcgaagtgaaattgacaa 17344
>emb|BX821190.1|CNS0A992 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL23ZF02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 725 Score = 50.1 bits (25), Expect = 0.007 Identities = 97/121 (80%) Strand = Plus / Plus Query: 95 aagatttcaattgagaaaagcaaataccttggaggtgatctggagcatactcatttggtc 154 ||||| || |||||| | |||||||| |||||||||||| | || ||||| ||||| || Sbjct: 254 aagatatctattgaggacagcaaatatcttggaggtgatgttgaacatacccatttagtt 313 Query: 155 aaagggttggattttgctctactaaacaaagtacgtagtgaaattgacaagaagcctgat 214 || || ||||||| |||| | | || |||||||| |||||||| | ||||| |||||| Sbjct: 314 aagggtttggattatgctttgttgaataaagtacgaagtgaaatcgttaagaatcctgat 373 Query: 215 g 215 | Sbjct: 374 g 374
>ref|XM_785934.1| PREDICTED: Strongylocentrotus purpuratus similar to IK cytokine, down-regulator of HLA II (LOC586140), partial mRNA Length = 1766 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 116 aaataccttggaggtgatctggagcatactcatttggtcaaagg 159 ||||| ||||| ||||| ||||||||||||||||||| ||||| Sbjct: 448 aaatatcttggtggtgacatggagcatactcatttggtgaaagg 491
>ref|XM_517977.1| PREDICTED: Pan troglodytes similar to IK protein (LOC462120), mRNA Length = 1009 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 551 catttggtgaaaggcttggattttgctct 579
>ref|NM_006083.2| Homo sapiens IK cytokine, down-regulator of HLA II (IK), mRNA Length = 1785 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 592 catttggtgaaaggcttggattttgctct 620
>gb|AC115051.6| Mus musculus chromosome 1, clone RP24-340A23, complete sequence Length = 158391 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ttcaattgagaaaagcaaata 120 ||||||||||||||||||||| Sbjct: 25135 ttcaattgagaaaagcaaata 25115
>emb|AL512292.5| Human DNA sequence from clone RP11-292O17 on chromosome 1 Contains a ribosomal protein L31 (RPL31) pseudogene, complete sequence Length = 135389 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 agtgaaattgacaagaagcct 211 ||||||||||||||||||||| Sbjct: 31374 agtgaaattgacaagaagcct 31354
>gb|BC013005.2| Homo sapiens IK cytokine, down-regulator of HLA II, mRNA (cDNA clone MGC:3980 IMAGE:3030079), complete cds Length = 1910 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 546 catttggtgaaaggcttggattttgctct 574
>gb|AC116353.2| Homo sapiens chromosome 5 clone RP11-515C16, complete sequence Length = 220535 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 109725 catttggtgaaaggcttggattttgctct 109753
>emb|CR926048.1| Pongo pygmaeus mRNA; cDNA DKFZp459A1710 (from clone DKFZp459A1710) Length = 1931 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 572 catttggtgaaaggcttggattttgctct 600
>emb|CR860353.1| Pongo pygmaeus mRNA; cDNA DKFZp459P1413 (from clone DKFZp459P1413) Length = 1979 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 619 catttggtgaaaggcttggattttgctct 647
>emb|AL050296.1|HSM800318 Homo sapiens mRNA; cDNA DKFZp564B112 (from clone DKFZp564B112) Length = 701 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 557 catttggtgaaaggcttggattttgctct 585
>emb|CR612510.1| full-length cDNA clone CS0DI053YL13 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1857 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 543 catttggtgaaaggcttggattttgctct 571
>gb|AC011398.8| Homo sapiens chromosome 5 clone CTB-25H4, complete sequence Length = 72754 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 11146 catttggtgaaaggcttggattttgctct 11118
>emb|BX821045.1|CNS0A9J6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH94ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1904 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Plus Query: 104 attgagaaaagcaaataccttggaggtgatctggagcatactcatttggtcaaagggttg 163 |||||||| ||||||| |||||||||||| | || ||||| ||||| || || || ||| Sbjct: 288 attgagaacagcaaatgtcttggaggtgatgttgaacatacccatttagttaagggtttg 347 Query: 164 gattttgct 172 |||| |||| Sbjct: 348 gattatgct 356
>gb|AC007238.3| Homo sapiens BAC clone RP11-19M18 from 2, complete sequence Length = 169147 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 41804 catttggtgaaaggcttggattttgctct 41832
>gb|AY007094.1| Homo sapiens clone TCCCIA00142 mRNA sequence Length = 1862 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 515 catttggtgaaaggcttggattttgctct 543
>gb|BC051295.1| Homo sapiens IK cytokine, down-regulator of HLA II, mRNA (cDNA clone IMAGE:3635553) Length = 1916 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 549 catttggtgaaaggcttggattttgctct 577
>gb|BC071964.1| Homo sapiens IK cytokine, down-regulator of HLA II, mRNA (cDNA clone MGC:88657 IMAGE:6461871), complete cds Length = 1930 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 539 catttggtgaaaggcttggattttgctct 567
>gb|AF182645.1|AF182645 Homo sapiens chondrosarcoma-associated protein 2 (CSA2) mRNA, complete cds Length = 1944 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 592 catttggtgaaaggcttggattttgctct 620
>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence Length = 192734 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ttcaattgagaaaagcaaata 120 ||||||||||||||||||||| Sbjct: 164373 ttcaattgagaaaagcaaata 164353
>emb|AJ005579.1|HSA5579 Homo sapiens mRNA for Prer protein Length = 1674 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 catttggtcaaagggttggattttgctct 174 |||||||| ||||| |||||||||||||| Sbjct: 481 catttggtgaaaggcttggattttgctct 509
>ref|NM_115164.2| Arabidopsis thaliana unknown protein AT3G53040 mRNA, complete cds Length = 1645 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 aaggcgagggaaacaaaaga 255 |||||||||||||||||||| Sbjct: 767 aaggcgagggaaacaaaaga 786
>gb|AC129900.1| Ciona savignyi, clone XX-1073457K4, complete sequence Length = 38504 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 atttcaattgagaaaagcaa 117 |||||||||||||||||||| Sbjct: 12984 atttcaattgagaaaagcaa 12965
>gb|BC026569.1| Mus musculus IK cytokine, mRNA (cDNA clone MGC:36371 IMAGE:4982612), complete cds Length = 1940 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 511 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 554
>gb|BC029694.1| Mus musculus IK cytokine, mRNA (cDNA clone MGC:36516 IMAGE:5369477), complete cds Length = 1965 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 520 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 563
>gb|BC033356.1| Mus musculus IK cytokine, mRNA (cDNA clone MGC:36500 IMAGE:5366230), complete cds Length = 1955 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 507 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 550
>gb|BC029671.1| Mus musculus IK cytokine, mRNA (cDNA clone MGC:36494 IMAGE:5364953), complete cds Length = 1962 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 523 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 566
>gb|BC014739.1| Mus musculus IK cytokine, mRNA (cDNA clone MGC:25508 IMAGE:4920184), complete cds Length = 1969 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 511 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 554
>ref|NM_001005537.1| Rattus norvegicus IK cytokine (Ik), mRNA Length = 2032 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 585 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 628
>ref|NM_011879.1| Mus musculus IK cytokine (Ik), mRNA Length = 1965 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 520 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 563
>gb|AY814102.1| Schistosoma japonicum SJCHGC05662 protein mRNA, complete cds Length = 2059 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 116 aaataccttggaggtgatctggagcatactcatttggtcaaagg 159 ||||| ||||| |||||| |||| ||||| || ||||||||||| Sbjct: 586 aaatatcttggtggtgatatggaacatacccacttggtcaaagg 629
>gb|AY539884.1| Rattus norvegicus LRRG00133 mRNA, complete cds Length = 2619 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 286 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 329
>emb|CR762485.16| Zebrafish DNA sequence from clone DKEY-269K12 in linkage group 19, complete sequence Length = 171225 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aaaagatttcaattgagaaa 112 |||||||||||||||||||| Sbjct: 69152 aaaagatttcaattgagaaa 69133
>gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosome 1, complete sequence Length = 173376 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gctagaagatgcccaaaagatttc 102 ||||||||||||| |||||||||| Sbjct: 4827 gctagaagatgccaaaaagatttc 4804
>ref|XM_674001.1| Plasmodium berghei strain ANKA hypothetical protein (PB000641.02.0) partial mRNA Length = 1113 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagg 159 |||||| | ||||||||||||||||| ||||| Sbjct: 277 ggtgatgttgagcatactcatttggttaaagg 308
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17, complete sequence Length = 202430 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cagaggatgggaaggatgcc 235 |||||||||||||||||||| Sbjct: 166462 cagaggatgggaaggatgcc 166443
>gb|BC029148.1| Mus musculus mRNA similar to IK cytokine (cDNA clone IMAGE:4947080) Length = 2914 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 553 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 596
>gb|BC006706.1| Mus musculus cDNA clone IMAGE:3584053, **** WARNING: chimeric clone **** Length = 2368 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 710 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 753
>gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence Length = 261093 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 205476 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 205519
>emb|BX927396.13| Zebrafish DNA sequence from clone DKEY-216H18 in linkage group 9, complete sequence Length = 115853 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 caacaacaaagcatgataaa 336 |||||||||||||||||||| Sbjct: 40562 caacaacaaagcatgataaa 40581
>gb|AY096471.1| Arabidopsis thaliana putative late embryogenesis abundant protein (At3g53040) mRNA, complete cds Length = 1471 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 aaggcgagggaaacaaaaga 255 |||||||||||||||||||| Sbjct: 685 aaggcgagggaaacaaaaga 704
>gb|AY072100.1| Arabidopsis thaliana putative late embryogenesis abundant protein (At3g53040) mRNA, complete cds Length = 1662 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 aaggcgagggaaacaaaaga 255 |||||||||||||||||||| Sbjct: 767 aaggcgagggaaacaaaaga 786
>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2 Length = 99814 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aaggcgagggaaacaaaaga 255 |||||||||||||||||||| Sbjct: 89101 aaggcgagggaaacaaaaga 89082
>emb|AL646098.9| Mouse DNA sequence from clone RP23-107I24 on chromosome 11, complete sequence Length = 200222 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ttggtcaaagggttggattt 168 |||||||||||||||||||| Sbjct: 108089 ttggtcaaagggttggattt 108108
>gb|AC129312.6| Mus musculus BAC clone RP24-405K6 from chromosome 1, complete sequence Length = 197135 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gctagaagatgcccaaaagatttc 102 ||||||||||||| |||||||||| Sbjct: 181093 gctagaagatgccaaaaagatttc 181070
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tctcattccgcactgcaatt 286 |||||||||||||||||||| Sbjct: 663548 tctcattccgcactgcaatt 663529
>dbj|AB075477.1| Homo sapiens neuroblastoma cDNA, clone:Nbla00003, full insert sequence Length = 3685 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cgtttcatgctgtggcacctcctg 65 ||||||||||||||||||| |||| Sbjct: 3117 cgtttcatgctgtggcaccacctg 3140
>dbj|AK167238.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0044M07 product:IK cytokine, full insert sequence Length = 986 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 545 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 588
>dbj|AK163766.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130004A08 product:IK cytokine, full insert sequence Length = 975 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 534 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 577
>dbj|AK029644.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930421B10 product:IK cytokine, full insert sequence Length = 1197 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 534 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 577
>dbj|AK088908.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430030O17 product:IK cytokine, full insert sequence Length = 1174 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 515 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 558
>dbj|AK087976.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001L07 product:IK cytokine, full insert sequence Length = 1938 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 526 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 569
>dbj|AK050625.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920023I19 product:IK cytokine, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 538 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 581
>gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone RP23-181H5, complete sequence Length = 220811 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 204950 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 204993
>gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone RP23-326L17, complete sequence Length = 218905 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 14849 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 14892
>dbj|AK082356.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230040F24 product:IK cytokine, full insert sequence Length = 1925 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 512 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 555
>emb|BX663523.7| Chicken DNA sequence from clone WAG-4C11, complete sequence Length = 86004 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 agaggatgggaaggatgcca 236 |||||||||||||||||||| Sbjct: 56328 agaggatgggaaggatgcca 56347
>ref|XM_575841.1| PREDICTED: Rattus norvegicus similar to enolase 1, alpha non-neuron (LOC366383), mRNA Length = 439 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 actgcaattgcaaagtctgtctac 301 ||||||||||||||| |||||||| Sbjct: 318 actgcaattgcaaaggctgtctac 341
>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19, complete sequence Length = 169802 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aaaagatttcaattgagaaa 112 |||||||||||||||||||| Sbjct: 24905 aaaagatttcaattgagaaa 24886
>gb|BC081870.1| Rattus norvegicus IK cytokine, mRNA (cDNA clone MGC:93710 IMAGE:7106138), complete cds Length = 2032 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 585 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 628
>emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chromosome 17, complete sequence Length = 210893 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cagaggatgggaaggatgcc 235 |||||||||||||||||||| Sbjct: 157647 cagaggatgggaaggatgcc 157666
>emb|AJ271753.1|MMU271753 Mus musculus Cx32 gene for connexin, alternative transcripts 1, 2 and 3 Length = 9099 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ttgccctgtcccagaggaaa 458 |||||||||||||||||||| Sbjct: 497 ttgccctgtcccagaggaaa 478
>emb|AJ006130.1|MMU6130 Mus musculus rer gene, partial Length = 1671 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 128 ggtgatctggagcatactcatttggtcaaagggttggattttgc 171 |||||| |||| || || |||||||| ||||| ||||||||||| Sbjct: 463 ggtgatatggaacacacccatttggtgaaaggtttggattttgc 506
>gb|M81446.1|MUSCX32A Mouse connexin (Cx32) gene Length = 930 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ttgccctgtcccagaggaaa 458 |||||||||||||||||||| Sbjct: 497 ttgccctgtcccagaggaaa 478
>emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on chromosome X, complete sequence Length = 136809 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ttgccctgtcccagaggaaa 458 |||||||||||||||||||| Sbjct: 116673 ttgccctgtcccagaggaaa 116654
>dbj|AB037911.1| Homo sapiens Nbla00003 mRNA, complete cds Length = 3698 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cgtttcatgctgtggcacctcctg 65 ||||||||||||||||||| |||| Sbjct: 3117 cgtttcatgctgtggcaccacctg 3140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,052,526 Number of Sequences: 3902068 Number of extensions: 5052526 Number of successful extensions: 108050 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107754 Number of HSP's gapped (non-prelim): 296 length of query: 491 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 469 effective length of database: 17,147,199,772 effective search space: 8042036693068 effective search space used: 8042036693068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)