ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal16f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CUBN_CANFA (Q9TU53) Cubilin precursor 32 0.59
2CUBN_RAT (O70244) Cubilin precursor (Intrinsic factor-cobalamin ... 30 1.3
3YGZC_YEAST (P53058) Hypothetical 22.2 kDa protein in ADH4 5'region 30 2.2
4TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G... 28 6.5
5CUBN_HUMAN (O60494) Cubilin precursor (Intrinsic factor-cobalami... 28 8.5
6Y3824_CHRVO (P60012) UPF0289 protein CV_3824 28 8.5

>CUBN_CANFA (Q9TU53) Cubilin precursor|
          Length = 3620

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 194  FHSSCGGF-HANSGSPVSKNFSYSIAPVLRASW 99
            FH SCGG+ HA+ G   S  +  + +P L  SW
Sbjct: 2085 FHKSCGGYLHADRGIITSPQYPETYSPNLNCSW 2117



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>CUBN_RAT (O70244) Cubilin precursor (Intrinsic factor-cobalamin receptor)|
            (Intrinsic factor-vitamin B12 receptor) (Glycoprotein
            280) (gp280) (460 kDa receptor)
          Length = 3623

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 194  FHSSCGGF-HANSGSPVSKNFSYSIAPVLRASW 99
            FH SCGG+ HA+ G   S  +  +  P L  SW
Sbjct: 2088 FHKSCGGYLHADRGVITSPKYPDTYLPNLNCSW 2120



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>YGZC_YEAST (P53058) Hypothetical 22.2 kDa protein in ADH4 5'region|
          Length = 206

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +1

Query: 52  PLVIVIGDHTCDPSALQDAL------RTGAIEYEKFLETGD 156
           PL+     +TC+P ++ DA+       TG IEY  + +T D
Sbjct: 98  PLIFTTNINTCNPQSIGDAMVPFANTVTGEIEYNSWADTAD 138



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>TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G-protein|
           coupled receptor 70) (Gm148)
          Length = 841

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = -1

Query: 176 GFH--------ANSGSPVSKNFSYSIAPVLRASWRAEGSQV*SPITITSGFLKEH 36
           GFH          +G+ ++K+  Y   P  +  W  EGSQ   P T+    L+EH
Sbjct: 511 GFHHCCFECVPCGAGTFLNKSDLYRCQPCGKEEWAPEGSQTCFPRTVVFLALREH 565



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>CUBN_HUMAN (O60494) Cubilin precursor (Intrinsic factor-cobalamin receptor)|
            (Intrinsic factor-vitamin B12 receptor) (460 kDa
            receptor) (Intestinal intrinsic factor receptor)
          Length = 3623

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 194  FHSSCGGF-HANSGSPVSKNFSYSIAPVLRASW 99
            FH SCGG+ HA+ G   S  +  +    L  SW
Sbjct: 2088 FHKSCGGYLHADRGIITSPKYPETYPSNLNCSW 2120



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>Y3824_CHRVO (P60012) UPF0289 protein CV_3824|
          Length = 252

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = -2

Query: 151 QFPRTSHIRLPLFSEHLGGL------KDHRYDHQ*LLQVAF 47
           +FP T   R+ L  E+L G       KDH +DH   LQV F
Sbjct: 5   EFPVTERTRILLRLEYLYGRLAYFIGKDHPHDHHAALQVLF 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,825,546
Number of Sequences: 219361
Number of extensions: 553068
Number of successful extensions: 1454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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