ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal16f22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 2e-29
2gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 137 2e-29
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
4gb|AC093531.2| Homo sapiens chromosome 5 clone RP11-405L7, compl... 42 0.68
5gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, comple... 42 0.68
6dbj|AP006370.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 0.68
7ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@)... 40 2.7
8gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complet... 40 2.7
9gb|AC158904.4| Mus musculus chromosome 19, clone RP23-16C24, com... 40 2.7
10gb|AC125607.6| Homo sapiens 3 BAC RP11-294L13 (Roswell Park Canc... 40 2.7
11gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complet... 40 2.7
12gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus,... 40 2.7
13gb|AC037433.6|AC037433 Homo sapiens chromosome 15, clone RP11-92... 40 2.7
14gb|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368... 40 2.7
15gb|AF107885.2|DJ270M14 Homo sapiens chromosome 14q24.3 clone BAC... 40 2.7
16gb|AC102548.11| Mus musculus chromosome 19, clone RP23-135H14, c... 40 2.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 2e-29
 Identities = 156/185 (84%)
 Strand = Plus / Minus

                                                                            
Query: 28       caaaagaaatgttctttcaaaaagccacttgtaatagttattggtgatcatacctgtgat 87
                ||||||||| |  |||||||| |||||||| |||| |||||||||||||| || ||||||
Sbjct: 10790144 caaaagaaaggagctttcaaacagccacttctaattgttattggtgatcaaacttgtgat 10790085

                                                                            
Query: 88       ccttcagccctccaagatgctctgagaacaggggcaatcgaatatgagaagttcttggaa 147
                ||     ||||| ||  |||| |||| | ||| || || || |||||| ||||  |||||
Sbjct: 10790084 cccgtgtccctcaaaagtgctttgagtaaaggagccattgagtatgaggagtttctggaa 10790025

                                                                            
Query: 148      actggcgaccctgaatttgcatggaaaccaccgcaggatgaatggaagagtattgcctta 207
                |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 10790024 actggcgatcctgaatttgcctggaaaccaccacaggatgaatggaagagtattgcctta 10789965

                     
Query: 208      ggtta 212
                |||||
Sbjct: 10789964 ggtta 10789960
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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score =  137 bits (69), Expect = 2e-29
 Identities = 156/185 (84%)
 Strand = Plus / Plus

                                                                         
Query: 28    caaaagaaatgttctttcaaaaagccacttgtaatagttattggtgatcatacctgtgat 87
             ||||||||| |  |||||||| |||||||| |||| |||||||||||||| || ||||||
Sbjct: 64743 caaaagaaaggagctttcaaacagccacttctaattgttattggtgatcaaacttgtgat 64802

                                                                         
Query: 88    ccttcagccctccaagatgctctgagaacaggggcaatcgaatatgagaagttcttggaa 147
             ||     ||||| ||  |||| |||| | ||| || || || |||||| ||||  |||||
Sbjct: 64803 cccgtgtccctcaaaagtgctttgagtaaaggagccattgagtatgaggagtttctggaa 64862

                                                                         
Query: 148   actggcgaccctgaatttgcatggaaaccaccgcaggatgaatggaagagtattgcctta 207
             |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 64863 actggcgatcctgaatttgcctggaaaccaccacaggatgaatggaagagtattgcctta 64922

                  
Query: 208   ggtta 212
             |||||
Sbjct: 64923 ggtta 64927
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 2e-29
 Identities = 156/185 (84%)
 Strand = Plus / Minus

                                                                            
Query: 28       caaaagaaatgttctttcaaaaagccacttgtaatagttattggtgatcatacctgtgat 87
                ||||||||| |  |||||||| |||||||| |||| |||||||||||||| || ||||||
Sbjct: 10788245 caaaagaaaggagctttcaaacagccacttctaattgttattggtgatcaaacttgtgat 10788186

                                                                            
Query: 88       ccttcagccctccaagatgctctgagaacaggggcaatcgaatatgagaagttcttggaa 147
                ||     ||||| ||  |||| |||| | ||| || || || |||||| ||||  |||||
Sbjct: 10788185 cccgtgtccctcaaaagtgctttgagtaaaggagccattgagtatgaggagtttctggaa 10788126

                                                                            
Query: 148      actggcgaccctgaatttgcatggaaaccaccgcaggatgaatggaagagtattgcctta 207
                |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 10788125 actggcgatcctgaatttgcctggaaaccaccacaggatgaatggaagagtattgcctta 10788066

                     
Query: 208      ggtta 212
                |||||
Sbjct: 10788065 ggtta 10788061
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>gb|AC093531.2| Homo sapiens chromosome 5 clone RP11-405L7, complete sequence
          Length = 163803

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 16   attatagcagatcaaaagaaatgtt 40
            |||||||||||| ||||||||||||
Sbjct: 5394 attatagcagataaaaagaaatgtt 5418
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>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence
          Length = 169812

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 16    attatagcagatcaaaagaaatgtt 40
             |||||||||||| ||||||||||||
Sbjct: 28634 attatagcagataaaaagaaatgtt 28610
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>dbj|AP006370.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT03K19, TM0214,
            complete sequence
          Length = 95881

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  accctgaatttgcatggaaac 175
            |||||||||||||||||||||
Sbjct: 5491 accctgaatttgcatggaaac 5471
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>ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@) on chromosome 7
          Length = 140728

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     ctttcaaaaagccacttgta 60
              ||||||||||||||||||||
Sbjct: 116745 ctttcaaaaagccacttgta 116726
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>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence
          Length = 171816

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    ctttcaaaaagccacttgta 60
             ||||||||||||||||||||
Sbjct: 78102 ctttcaaaaagccacttgta 78121
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>gb|AC158904.4| Mus musculus chromosome 19, clone RP23-16C24, complete sequence
          Length = 219567

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     catacctgtgatccttcagc 95
              ||||||||||||||||||||
Sbjct: 138063 catacctgtgatccttcagc 138082
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>gb|AC125607.6| Homo sapiens 3 BAC RP11-294L13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 30105

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   aatgttctttcaaaaagcca 54
            ||||||||||||||||||||
Sbjct: 9250 aatgttctttcaaaaagcca 9231
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>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence
          Length = 178378

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aagaaatgttctttcaaaaa 50
             ||||||||||||||||||||
Sbjct: 25740 aagaaatgttctttcaaaaa 25759
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>gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus, complete sequence
          Length = 140691

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     ctttcaaaaagccacttgta 60
              ||||||||||||||||||||
Sbjct: 116712 ctttcaaaaagccacttgta 116693
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>gb|AC037433.6|AC037433 Homo sapiens chromosome 15, clone RP11-92C13, complete sequence
          Length = 164500

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     aaagaaatgttctttcaaaa 49
              ||||||||||||||||||||
Sbjct: 139385 aaagaaatgttctttcaaaa 139366
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>gb|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368K8 containing KIAA0998 gene,
              partial cds, complete sequence
          Length = 185964

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    agaagttcttggaaactggc 153
              ||||||||||||||||||||
Sbjct: 173862 agaagttcttggaaactggc 173881
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>gb|AF107885.2|DJ270M14 Homo sapiens chromosome 14q24.3 clone BAC270M14 transforming growth
             factor-beta 3 (TGF-beta 3) gene, complete cds; and unknown
             genes
          Length = 192126

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   agaagttcttggaaactggc 153
             ||||||||||||||||||||
Sbjct: 30798 agaagttcttggaaactggc 30817
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>gb|AC102548.11| Mus musculus chromosome 19, clone RP23-135H14, complete sequence
          Length = 227173

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     catacctgtgatccttcagc 95
              ||||||||||||||||||||
Sbjct: 158462 catacctgtgatccttcagc 158443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,015,388
Number of Sequences: 3902068
Number of extensions: 2015388
Number of successful extensions: 144879
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144718
Number of HSP's gapped (non-prelim): 161
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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