Clone Information

BLAST Search Result

Clone Name	baal15p08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	206	4e-50
2	dbj\|AK121949.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	206	4e-50
3	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	206	4e-50
4	emb\|AL831810.4\|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa...	206	4e-50
5	dbj\|AK072071.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	1e-31
6	gb\|AC098572.2\| Oryza sativa (japonica cultivar-group) chromosome...	109	7e-21
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	109	7e-21
8	emb\|AJ271605.2\|DSA271605 Dunaliella salina mRNA for chloroplast-...	80	6e-12
9	gb\|AY072744.1\| Dunaliella salina heat shock protein 70B (hsp70B)...	72	1e-09
10	gb\|CP000110.1\| Synechococcus sp. CC9605, complete genome	62	1e-06
11	emb\|X96502.1\|CRHSP70B C.reinhardtii hsp70b gene	58	2e-05
12	gb\|U92815.1\|CLU92815 Citrullus lanatus heat shock protein 70 pre...	50	0.005
13	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	48	0.022
14	gb\|CP000097.1\| Synechococcus sp. CC9902, complete genome	46	0.086
15	gb\|AC140550.31\| Medicago truncatula clone mth2-54a24, complete s...	46	0.086
16	emb\|CT573326.1\| Pseudomonas entomophila str. L48 chromosome,comp...	46	0.086
17	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	44	0.34
18	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	44	0.34
19	emb\|X77458.1\|SCDNAJ S.coelicolor dnaK, grpE and dnaJ genes	44	0.34
20	emb\|AL939117.1\|SCO939117 Streptomyces coelicolor A3(2) complete ...	44	0.34
21	gb\|L46700.1\|STMDNAK Streptomyces coelicolor DnaK (dnaK), GrpE (g...	44	0.34
22	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	44	0.34
23	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	44	0.34
24	gb\|AC135914.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
25	emb\|BX569695.1\| Synechococcus sp. WH8102 complete genome; segmen...	42	1.3
26	gb\|L12237.1\|MSG8318K Mycobacterium avium (clone Mavc83) DNA sequ...	42	1.3
27	ref\|NM_190356.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.3
28	gb\|CP000144.1\| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl...	40	5.3
29	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	5.3
30	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	5.3
31	emb\|CR655756.2\|CNS0F4YA Tetraodon nigroviridis full-length cDNA	40	5.3
32	emb\|AL939127.1\|SCO939127 Streptomyces coelicolor A3(2) complete ...	40	5.3
33	gb\|AY738621.1\| Natronococcus occultus DnaK gene, partial cds	40	5.3
34	gb\|CP000240.1\| Synechococcus sp. JA-2-3B'a(2-13), complete genome	40	5.3
35	dbj\|AK132201.1\| Mus musculus 10 days embryo whole body cDNA, RIK...	40	5.3
36	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	5.3
37	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
38	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
39	dbj\|AP003409.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
40	dbj\|AP003348.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
41	dbj\|AP003302.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
42	dbj\|AP005872.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
43	dbj\|AP005867.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
44	gb\|AF135163.1\|AF135163 Pseudomonas syringae pv. glycinea DnaK pr...	40	5.3
45	gb\|AY752741.1\| Mesorhizobium loti strain ATCC 33669 DnaK gene, c...	40	5.3
46	gb\|AF073320.1\|AF073320 Streptomyces scabies strain ATCC33282 ORF...	40	5.3
47	gb\|AF073319.1\|AF073319 Streptomyces scabies strain 87.22 ORFtnp ...	40	5.3
48	gb\|AF073318.1\|AF073318 Streptomyces acidiscabies strain ATCC4900...	40	5.3
49	gb\|AF073316.1\|AF073316 Streptomyces acidiscabies strain 84.104 O...	40	5.3
50	gb\|AF073315.1\|AF073315 Streptomyces turgidiscabies strain Hi-C-1...	40	5.3
51	gb\|AF073314.1\|AF073314 Streptomyces turgidiscabies strain Car-8 ...	40	5.3
52	gb\|AY707080.1\| Streptomyces turgidiscabies pathogenicity island ...	40	5.3
53	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	40	5.3
54	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	5.3
55	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	5.3
56	gb\|AF031232.1\|AF031232 Streptomyces scabies transposase pseudoge...	40	5.3
57	emb\|AL935055.8\| Mouse DNA sequence from clone RP23-131J21 on chr...	40	5.3
58	dbj\|AP003256.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Plus

                                                                           
Query: 225     cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 284
               ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| |
Sbjct: 7985422 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 7985481

                                                                           
Query: 285     tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 344
               | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7985482 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 7985541

                                           
Query: 345     cgccttccgtggtggcttacaccaaggg 372
               |||| ||||||||||| |||||||||||
Sbjct: 7985542 cgccctccgtggtggcgtacaccaaggg 7985569

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>dbj|AK121949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107J07, full
           insert sequence
          Length = 2462

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Plus

                                                                       
Query: 225 cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 284
           ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| |
Sbjct: 215 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 274

                                                                       
Query: 285 tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 344
           | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 275 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 334

                                       
Query: 345 cgccttccgtggtggcttacaccaaggg 372
           |||| ||||||||||| |||||||||||
Sbjct: 335 cgccctccgtggtggcgtacaccaaggg 362

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Plus

                                                                           
Query: 225     cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 284
               ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| |
Sbjct: 7985303 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 7985362

                                                                           
Query: 285     tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 344
               | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7985363 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 7985422

                                           
Query: 345     cgccttccgtggtggcttacaccaaggg 372
               |||| ||||||||||| |||||||||||
Sbjct: 7985423 cgccctccgtggtggcgtacaccaaggg 7985450

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>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153111

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                         
Query: 225   cgatgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccg 284
             ||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||| |
Sbjct: 14748 cgatgcgggtggcgtgcgagaaggtggtggggatcgacctcgggacgaccaactccgcgg 14689

                                                                         
Query: 285   tcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacga 344
             | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14688 tggcggcgatggagggcgggaagccgacggtcatcaccaacgccgagggccagcggacga 14629

                                         
Query: 345   cgccttccgtggtggcttacaccaaggg 372
             |||| ||||||||||| |||||||||||
Sbjct: 14628 cgccctccgtggtggcgtacaccaaggg 14601

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>dbj|AK072071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L16, full
           insert sequence
          Length = 2201

 Score =  145 bits (73), Expect = 1e-31
 Identities = 94/101 (93%)
 Strand = Plus / Plus

                                                                       
Query: 272 accaactccgccgtcgcggcgatggagggcggtaagccgacggtgatcaccaacgccgag 331
           ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 7   accaactccgcggtggcggcgatggagggcgggaagccgacggtcatcaccaacgccgag 66

                                                    
Query: 332 ggccagcggacgacgccttccgtggtggcttacaccaaggg 372
           | ||||||||||||||| ||||||||||| |||||||||||
Sbjct: 67  gaccagcggacgacgccctccgtggtggcgtacaccaaggg 107

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>gb|AC098572.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1234_D05, complete sequence
          Length = 107476

 Score =  109 bits (55), Expect = 7e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                         
Query: 228   tgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccgtcg 287
             |||||||| |||||||||||||||| || |||||||| || || ||||||||||| || |
Sbjct: 32623 tgcgggtggcgtgcgagaaggtggtcgggatcgacctcgggaccaccaactccgcggtgg 32682

                                                            
Query: 288   cggcgatggagggcggtaagccgacggtgatcaccaacgccgagggc 334
             |||| ||||||||||| ||||||||| |  |||||||||||||||||
Sbjct: 32683 cggccatggagggcggcaagccgacgatcgtcaccaacgccgagggc 32729

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 7e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 228      tgcgggtgacgtgcgagaaggtggtgggaatcgacctgggcactaccaactccgccgtcg 287
                |||||||| |||||||||||||||| || |||||||| || || ||||||||||| || |
Sbjct: 13488577 tgcgggtggcgtgcgagaaggtggtcgggatcgacctcgggaccaccaactccgcggtgg 13488636

                                                               
Query: 288      cggcgatggagggcggtaagccgacggtgatcaccaacgccgagggc 334
                |||| ||||||||||| ||||||||| |  |||||||||||||||||
Sbjct: 13488637 cggccatggagggcggcaagccgacgatcgtcaccaacgccgagggc 13488683



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 24      cccctccgggccatcgccgcc 44
               |||||||||||||||||||||
Sbjct: 6844023 cccctccgggccatcgccgcc 6844003

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>emb|AJ271605.2|DSA271605 Dunaliella salina mRNA for chloroplast-localised heat shock protein
           (hsp70B gene)
          Length = 2764

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                       
Query: 242 gagaaggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggc 301
           |||||||||||||| |||||| |||| || ||||||||||| || || ||||||||||| 
Sbjct: 201 gagaaggtggtgggcatcgacttgggaaccaccaactccgctgtggcagcgatggaggga 260

                                           
Query: 302 ggtaagccgacggtgatcaccaacgccgaggg 333
           || ||||||||  | ||||||||||| |||||
Sbjct: 261 ggcaagccgaccatcatcaccaacgctgaggg 292

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>gb|AY072744.1| Dunaliella salina heat shock protein 70B (hsp70B) mRNA, complete
           cds
          Length = 2732

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 242 gagaaggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggc 301
           ||||||||||| || |||||| |||| || ||||||||||| || || ||||||||||| 
Sbjct: 145 gagaaggtggttggcatcgacttgggaaccaccaactccgctgtggcagcgatggaggga 204

                                           
Query: 302 ggtaagccgacggtgatcaccaacgccgaggg 333
           || ||||| ||| | ||| |||||||||||||
Sbjct: 205 ggcaagcccacgatcatcgccaacgccgaggg 236

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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                           
Query: 292     gatggagggcggtaagccgacggtgatcaccaacgccgagggccagcggacgacgccttc 351
               ||||||||| || ||||| || |||||| | ||||||||||||   || |||||||||||
Sbjct: 2489024 gatggagggtggcaagcccaccgtgatcgcgaacgccgagggcttccgcacgacgccttc 2488965

                              
Query: 352     cgtggtggcttacac 366
               |||||| ||||||||
Sbjct: 2488964 cgtggttgcttacac 2488950

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>emb|X96502.1|CRHSP70B C.reinhardtii hsp70b gene
          Length = 5598

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                        
Query: 246  aggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggcggta 305
            |||| ||||| ||||| |||||||| |||||||| || || || || |||||||| || |
Sbjct: 1440 aggtcgtgggtatcgatctgggcacgaccaactcggctgtggctgccatggagggtggca 1499

                                         
Query: 306  agccgacggtgatcaccaacgccgagggc 334
            |||||||  | ||||||||||| ||||||
Sbjct: 1500 agccgaccatcatcaccaacgctgagggc 1528

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>gb|U92815.1|CLU92815 Citrullus lanatus heat shock protein 70 precursor mRNA, complete
           cds
          Length = 2430

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 100/125 (80%)
 Strand = Plus / Plus

                                                                       
Query: 242 gagaaggtggtgggaatcgacctgggcactaccaactccgccgtcgcggcgatggagggc 301
           ||||| || |||||||| || || || ||||| |||||||| || ||||| ||||| || 
Sbjct: 247 gagaaagttgtgggaattgatcttggaactactaactccgcagttgcggccatggaaggt 306

                                                                       
Query: 302 ggtaagccgacggtgatcaccaacgccgagggccagcggacgacgccttccgtggtggct 361
           || ||||| ||  |  | ||||||||||| ||| || | |||||||| || |||||||||
Sbjct: 307 gggaagccaactattgtaaccaacgccgaaggcaagagaacgacgccatcggtggtggct 366

                
Query: 362 tacac 366
           |||||
Sbjct: 367 tacac 371

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 251     gtgggaatcgacctgggcactaccaact 278
               ||||| ||||||||||||||||||||||
Sbjct: 3798968 gtgggcatcgacctgggcactaccaact 3798941

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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 292     gatggagggcggtaagccgacggtgatcaccaacgccgagggc 334
               ||||||||| |||||||| || || ||| ||||||||||||||
Sbjct: 2215405 gatggagggtggtaagcccaccgttatcgccaacgccgagggc 2215363

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>gb|AC140550.31| Medicago truncatula clone mth2-54a24, complete sequence
          Length = 129388

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 86/107 (80%)
 Strand = Plus / Plus

                                                                         
Query: 264   tgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtgatcacca 323
             |||| |||||||| ||||||||||| || ||||| || || || || ||  | |||||||
Sbjct: 26515 tgggtactaccaattccgccgtcgccgccatggaaggtggcaaacctaccatcatcacca 26574

                                                            
Query: 324   acgccgagggccagcggacgacgccttccgtggtggcttacaccaag 370
             ||||||| || ||||| || || || || || || ||||||||||||
Sbjct: 26575 acgccgaaggtcagcgtaccactccctctgtcgttgcttacaccaag 26621

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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 250     ggtgggaatcgacctgggcactaccaactcc 280
               |||||| |||||||||||||| |||||||||
Sbjct: 1064481 ggtgggcatcgacctgggcaccaccaactcc 1064511

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 251     gtgggaatcgacctgggcactaccaa 276
               |||||||||||| |||||||||||||
Sbjct: 5209598 gtgggaatcgacttgggcactaccaa 5209573



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    atcgacctgggcactaccaactcc 280
              ||||||||||| ||||||||||||
Sbjct: 894940 atcgacctggggactaccaactcc 894963

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 251     gtgggaatcgacctgggcactaccaa 276
               ||||| ||||||||||||||||||||
Sbjct: 1397489 gtgggtatcgacctgggcactaccaa 1397514



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 257     atcgacctgggcactaccaactcc 280
               ||||||||||| ||||||||||||
Sbjct: 4992600 atcgacctggggactaccaactcc 4992577

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>emb|X77458.1|SCDNAJ S.coelicolor dnaK, grpE and dnaJ genes
          Length = 5611

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 257  atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 316
            |||||||||||||| || ||||||| ||||   |   ||||||||||  |||| || || 
Sbjct: 1894 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 1953

                              
Query: 317  atcaccaacgccgagggc 334
            ||||||||||||||||||
Sbjct: 1954 atcaccaacgccgagggc 1971

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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                          
Query: 257    atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 316
              |||||||||||||| || ||||||| ||||   |   ||||||||||  |||| || || 
Sbjct: 134725 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 134666

                                
Query: 317    atcaccaacgccgagggc 334
              ||||||||||||||||||
Sbjct: 134665 atcaccaacgccgagggc 134648

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>gb|L46700.1|STMDNAK Streptomyces coelicolor DnaK (dnaK), GrpE (grpE), DnaJ (dnaJ), and
           heat shock protein (hspR) genes, complete cds
          Length = 4648

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 257 atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 316
           |||||||||||||| || ||||||| ||||   |   ||||||||||  |||| || || 
Sbjct: 218 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 277

                             
Query: 317 atcaccaacgccgagggc 334
           ||||||||||||||||||
Sbjct: 278 atcaccaacgccgagggc 295

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                           
Query: 257     atcgacctgggcactaccaactccgccgtcgcggcgatggagggcggtaagccgacggtg 316
               |||||||||||||| || ||||||| ||||   |   ||||||||||  |||| || || 
Sbjct: 5479072 atcgacctgggcacgactaactccgtcgtcagcgttctggagggcggcgagcccaccgtc 5479131

                                 
Query: 317     atcaccaacgccgagggc 334
               ||||||||||||||||||
Sbjct: 5479132 atcaccaacgccgagggc 5479149



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 104    tcccaggtcagcgcgatggcca 125
              ||||||||||||||||||||||
Sbjct: 405428 tcccaggtcagcgcgatggcca 405407



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 104    tcccaggtcagcgcgatggcca 125
              ||||||||||||||||||||||
Sbjct: 351862 tcccaggtcagcgcgatggcca 351841



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 251     gtgggaatcgacctgggcactaccaactc 279
               ||||| |||||||||||||| ||||||||
Sbjct: 8630212 gtgggcatcgacctgggcaccaccaactc 8630240

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 109     ggtcagcgcgatggccagcgcc 130
               ||||||||||||||||||||||
Sbjct: 4521105 ggtcagcgcgatggccagcgcc 4521126

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>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0074P11, complete sequence
          Length = 148753

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    cccctccgggccatcgccgcc 44
             |||||||||||||||||||||
Sbjct: 74977 cccctccgggccatcgccgcc 74957

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>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7
          Length = 344615

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 338    cggacgacgccttccgtggtggcttacaccaag 370
              ||||| ||||| ||||| |||||||||||||||
Sbjct: 325190 cggaccacgccctccgtcgtggcttacaccaag 325158

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>gb|L12237.1|MSG8318K Mycobacterium avium (clone Mavc83) DNA sequence encoding an 18 kDa
           protein
          Length = 610

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 160 gcggcggccggcggtcatgcc 180
           |||||||||||||||||||||
Sbjct: 254 gcggcggccggcggtcatgcc 274

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>ref|NM_190356.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atggccagcgcctccccgtc 138
           ||||||||||||||||||||
Sbjct: 265 atggccagcgcctccccgtc 284

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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    tgcgggttgctcgtggcgggcggc 212
              |||||||||| |||||||||||||
Sbjct: 433794 tgcgggttgcgcgtggcgggcggc 433817

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 257     atcgacctgggcactaccaactcc 280
               ||||||||||| ||||||||||||
Sbjct: 5077639 atcgacctggggactaccaactcc 5077616

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 257     atcgacctgggcactaccaactcc 280
               ||||||||||| ||||||||||||
Sbjct: 4797113 atcgacctggggactaccaactcc 4797090

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>emb|CR655756.2|CNS0F4YA Tetraodon nigroviridis full-length cDNA
          Length = 368

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 248 gtggtgggaatcgacctgggcactaccaactc 279
           ||||| ||||||||||||||||| ||| ||||
Sbjct: 233 gtggttggaatcgacctgggcaccacctactc 264

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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gccggcggcggccggcggtc 175
              ||||||||||||||||||||
Sbjct: 227738 gccggcggcggccggcggtc 227757

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>gb|AY738621.1| Natronococcus occultus DnaK gene, partial cds
          Length = 1359

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 321 ccaacgccgagggccagcggacgacgcc 348
           ||||||| |||||| |||||||||||||
Sbjct: 35  ccaacgcggagggcgagcggacgacgcc 62

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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 314     gtgatcaccaacgccgaggg 333
               ||||||||||||||||||||
Sbjct: 3036302 gtgatcaccaacgccgaggg 3036321

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>dbj|AK132201.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:3425403H08 product:nuclear
           receptor subfamily 2, group E, member 1, full insert
           sequence
          Length = 3242

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gagccggcggcggccggcgg 173
           ||||||||||||||||||||
Sbjct: 600 gagccggcggcggccggcgg 619

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 311     acggtgatcaccaacgccgagggc 334
               ||||||||| ||||||||||||||
Sbjct: 5197261 acggtgatcgccaacgccgagggc 5197284

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 119      atggccagcgcctccccgtc 138
                ||||||||||||||||||||
Sbjct: 12343249 atggccagcgcctccccgtc 12343230

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 15       ccttctcatcccctccgggccatc 38
                |||||||||||||||||| |||||
Sbjct: 35028677 ccttctcatcccctccggcccatc 35028654



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 119      atggccagcgcctccccgtc 138
                ||||||||||||||||||||
Sbjct: 35028235 atggccagcgcctccccgtc 35028216



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 119      atggccagcgcctccccgtc 138
                ||||||||||||||||||||
Sbjct: 31905209 atggccagcgcctccccgtc 31905190

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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131G08
          Length = 158241

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   atggccagcgcctccccgtc 138
             ||||||||||||||||||||
Sbjct: 91287 atggccagcgcctccccgtc 91268

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>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485B12
          Length = 156047

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    ccttctcatcccctccgggccatc 38
             |||||||||||||||||| |||||
Sbjct: 35827 ccttctcatcccctccggcccatc 35804



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   atggccagcgcctccccgtc 138
             ||||||||||||||||||||
Sbjct: 35385 atggccagcgcctccccgtc 35366

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>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0703B11
          Length = 144074

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    ccttctcatcccctccgggccatc 38
             |||||||||||||||||| |||||
Sbjct: 72905 ccttctcatcccctccggcccatc 72882



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   atggccagcgcctccccgtc 138
             ||||||||||||||||||||
Sbjct: 72463 atggccagcgcctccccgtc 72444

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>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1168F12
          Length = 141524

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    atggccagcgcctccccgtc 138
              ||||||||||||||||||||
Sbjct: 126803 atggccagcgcctccccgtc 126784

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>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0599F09
          Length = 157415

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  atggccagcgcctccccgtc 138
            ||||||||||||||||||||
Sbjct: 8833 atggccagcgcctccccgtc 8814

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>gb|AF135163.1|AF135163 Pseudomonas syringae pv. glycinea DnaK protein (dnaK) gene,
           complete cds
          Length = 1917

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 257 atcgacctgggcactaccaactcc 280
           ||||||||||| ||||||||||||
Sbjct: 19  atcgacctggggactaccaactcc 42

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>gb|AY752741.1| Mesorhizobium loti strain ATCC 33669 DnaK gene, complete cds
          Length = 1917

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 257 atcgacctgggcactaccaactcc 280
           |||||||||||||| |||||||||
Sbjct: 19  atcgacctgggcacgaccaactcc 42

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>gb|AF073320.1|AF073320 Streptomyces scabies strain ATCC33282 ORFtnp pseudogene, complete
           sequence; and plant pathogenicity factor (nec1) gene,
           complete cds
          Length = 1508

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 139 tcccaggtcagcgcgatggc 120

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>gb|AF073319.1|AF073319 Streptomyces scabies strain 87.22 ORFtnp pseudogene, complete
           sequence; and plant pathogenicity factor (nec1) gene,
           complete cds
          Length = 1485

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 139 tcccaggtcagcgcgatggc 120

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>gb|AF073318.1|AF073318 Streptomyces acidiscabies strain ATCC49003 ORFtnp pseudogene,
           complete sequence
          Length = 729

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 119 tcccaggtcagcgcgatggc 100

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>gb|AF073316.1|AF073316 Streptomyces acidiscabies strain 84.104 ORFtnp pseudogene, complete
           sequence
          Length = 749

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 139 tcccaggtcagcgcgatggc 120

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>gb|AF073315.1|AF073315 Streptomyces turgidiscabies strain Hi-C-13 ORFtnp pseudogene,
           complete sequence; and plant pathogenicity factor (nec1)
           gene, complete cds
          Length = 1508

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 139 tcccaggtcagcgcgatggc 120

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>gb|AF073314.1|AF073314 Streptomyces turgidiscabies strain Car-8 ORFtnp pseudogene,
           complete sequence; and plant pathogenicity factor (nec1)
           gene, complete cds
          Length = 1488

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 119 tcccaggtcagcgcgatggc 100

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>gb|AY707080.1| Streptomyces turgidiscabies pathogenicity island putative
            transposase, hypothetical protein, putative transposase
            (IS1629), and negrogenic protein (nec1) genes, putative
            transposase pseudogene, and putative resolvase/invertase
            gene, complete cds
          Length = 11000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  tcccaggtcagcgcgatggc 123
            ||||||||||||||||||||
Sbjct: 5002 tcccaggtcagcgcgatggc 5021

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     aggtcagcgcgatggccagc 127
               ||||||||||||||||||||
Sbjct: 5957118 aggtcagcgcgatggccagc 5957137

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 257     atcgacctgggcactaccaactcc 280
               |||||||||||||| |||||||||
Sbjct: 1779303 atcgacctgggcaccaccaactcc 1779326

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ttgctcgtggcgggcggcca 214
             ||||||||||||||||||||
Sbjct: 27048 ttgctcgtggcgggcggcca 27067

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>gb|AF031232.1|AF031232 Streptomyces scabies transposase pseudogene, partial sequence;
           plant pathogenicity factor (nec1) gene, complete cds;
           and unknown gene
          Length = 2406

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tcccaggtcagcgcgatggc 123
           ||||||||||||||||||||
Sbjct: 291 tcccaggtcagcgcgatggc 272

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>emb|AL935055.8| Mouse DNA sequence from clone RP23-131J21 on chromosome 2, complete
             sequence
          Length = 210691

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 3     ctccgcccacctccttctcatcccctcc 30
             |||| |||||||||||||| ||||||||
Sbjct: 51155 ctccccccacctccttctcttcccctcc 51128

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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  atggccagcgcctccccgtc 138
            ||||||||||||||||||||
Sbjct: 1936 atggccagcgcctccccgtc 1917


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,477,662
Number of Sequences: 3902068
Number of extensions: 2477662
Number of successful extensions: 62337
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 60679
Number of HSP's gapped (non-prelim): 1658
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result