ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal15p01 |
|---|---|
| Clone Library Name | barley_pub |
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 45.4 bits (106), Expect = 7e-05 Identities = 21/46 (45%), Positives = 32/46 (69%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENI 172 FL+CL I++QE+I+R+EL LVS L +P+L F FL + E++ Sbjct: 484 FLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKESV 529 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 154 FL + + + I + + VS + + +PDL++GFN FL Sbjct: 147 FLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFL 186
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 45.4 bits (106), Expect = 7e-05 Identities = 21/46 (45%), Positives = 32/46 (69%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENI 172 FL+CL I++QE+I+R+EL LVS L +P+L F FL + E++ Sbjct: 483 FLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKESV 528 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 154 FL + + + I + + VS + + +PDL++GFN FL Sbjct: 147 FLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFL 186
>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1098 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 154 FL+C+ +++QE+++ SEL LVS L +P+L F FL Sbjct: 318 FLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFL 357 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = +2 Query: 353 VKEKYLCKPIS---------ELDLSNCQRCTPSYRLLPKNYPMPXAGNKT 475 VKE P+S E+D ++C+R SYR LPK Y P +T Sbjct: 359 VKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRT 408 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENID 175 FL+ + + + I + VS + +PDL+VGFN FL ID Sbjct: 58 FLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRID 104
>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1162 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 154 FL+C+ +++QE+++ SEL LVS L +P+L F FL Sbjct: 327 FLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFL 366 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = +2 Query: 353 VKEKYLCKPIS---------ELDLSNCQRCTPSYRLLPKNYPMPXAGNKT 475 VKE P+S E+D ++C+R SYR LPK Y P +T Sbjct: 368 VKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRT 417 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENID 175 FL+ + + + I + VS + +PDL+VGFN FL ID Sbjct: 65 FLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRID 111
>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)| Length = 1522 Score = 33.1 bits (74), Expect = 0.38 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 377 PISELDLSNCQRCTPSYRLLPK 442 P +DL+ C+ C PSYRLLPK Sbjct: 584 PRPRVDLTQCKSCGPSYRLLPK 605 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENID------GFLAGVF 196 FL + + + I E+ VS + YP+L+ GFN FL +I+ G LAG+ Sbjct: 206 FLDIMKEFKSQAIETPEVITRVSKLFAGYPNLIQGFNTFLPPGYSIEISSADPGSLAGIH 265 Query: 197 SKKQPGRLI 223 G L+ Sbjct: 266 ITTPQGPLM 274
>3BHS7_MOUSE (Q9EQC1) 3 beta-hydroxysteroid dehydrogenase type 7 (3| beta-hydroxysteroid dehydrogenase type VII) (3Beta-HSD VII) (3-beta-hydroxy-delta(5)-C27 steroid oxidoreductase) (EC 1.1.1.-) (C(27) 3beta-HSD) Length = 369 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +3 Query: 312 DYIQRKALARNPRLSKRSIYANQYQSWISQIVSDALQVTGFYLKITQ 452 ++I R L R PRL + ++ SW+ ++ + +QVT +TQ Sbjct: 23 EHIVRMLLEREPRLRELRVFDLHLSSWLEELKAGPVQVTAIQGDVTQ 69
>RL24_YARLI (Q6C4U6) 60S ribosomal protein L24| Length = 155 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +3 Query: 222 SKQRIKKEIRTMRGRKGTEIGTRKEKRNGKDYIQRKALARNPRLSK 359 SK+R +K ++ +RG G + KEKRN + + A++ +K Sbjct: 68 SKKRSRKSVKAVRGIVGASLDVIKEKRNARPETRNATRAKHAEAAK 113
>PST3_SCHPO (O74755) Paired amphipathic helix protein pst3 (SIN3 homolog 3)| Length = 1154 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +2 Query: 35 FLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFL 154 FL+ + + + + + N VS++ YP L+ GFN FL Sbjct: 139 FLEIMRDFKSQALDTLGVINRVSELFNGYPQLIEGFNTFL 178
>SIN3_YEAST (P22579) Paired amphipathic helix protein SIN3| Length = 1536 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +2 Query: 8 IXHEVLTRXFLKCLHIYSQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCE 166 I ++ L FLK L++YSQ+I+ +L V L +L F F+ + E Sbjct: 676 IGNKHLYTEFLKILNLYSQDILDLDDLVEKVDFYLGSNKELFTWFKNFVGYQE 728
>EI2BG_YEAST (P09032) Translation initiation factor eIF-2B gamma subunit (eIF-2B| GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD1) (GCD complex subunit GCD1) Length = 578 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 47 LHIYSQEIITRSELKNLVSDILQHYPDLMVG---FNEFLEHC 163 L +YSQ +T+++ + S +L +YP+L V N F+ C Sbjct: 239 LDVYSQRDVTKTKYLQIRSHLLWNYPNLTVSTKLLNSFIYFC 280
>ERYA3_SACER (Q03133) Erythronolide synthase, modules 5 and 6 (EC 2.3.1.94) (ORF| 3) (6-deoxyerythronolide B synthase III) (DEBS 3) Length = 3171 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 98 VSDILQHYPDLMVGFNEFLEHCENIDGF 181 VS ++ Y DL+ G ++F EH + DGF Sbjct: 2915 VSGRVRSYLDLLAGLSDFREHFDGSDGF 2942
>RDRP_SHMV (P89202) RNA-directed RNA polymerase (EC 2.7.7.48) (186 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (128 kDa protein)] Length = 1629 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +2 Query: 59 SQEIITRSELKNLVSDILQHYPDLMVGFNEFLEHCENI 172 S+ ++ +E VSD++ P L F +F ++CE + Sbjct: 557 SEHLVATNEYYAKVSDLVDRNPTLAFDFEKFQDYCEKL 594
>3BHS7_HUMAN (Q9H2F3) 3 beta-hydroxysteroid dehydrogenase type 7 (3| beta-hydroxysteroid dehydrogenase type VII) (3Beta-HSD VII) (3-beta-hydroxy-delta(5)-C27 steroid oxidoreductase) (EC 1.1.1.-) (C(27) 3beta-HSD) Length = 369 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/47 (23%), Positives = 24/47 (51%) Frame = +3 Query: 312 DYIQRKALARNPRLSKRSIYANQYQSWISQIVSDALQVTGFYLKITQ 452 +++ R L R PRL + ++ W+ ++ + ++VT +TQ Sbjct: 23 EHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRVTAIQGDVTQ 69
>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12| Length = 838 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/43 (30%), Positives = 27/43 (62%) Frame = +3 Query: 225 KQRIKKEIRTMRGRKGTEIGTRKEKRNGKDYIQRKALARNPRL 353 K++ +KE++ +R KG+ + + ++K+ K+ +K L R P L Sbjct: 592 KEKDQKELKKLRSMKGSSMDSSEQKKTKKNL--KKFLTRRPTL 632 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,994,850 Number of Sequences: 219361 Number of extensions: 962525 Number of successful extensions: 2713 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2712 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
