| Clone Name | baal16d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT024079.1| Zea mays clone EL01N0525A10 mRNA sequence Length = 2294 Score = 190 bits (96), Expect = 2e-45 Identities = 171/196 (87%) Strand = Plus / Plus Query: 210 gctcttggaggtactcacggcgtgcccaaggtgcattataaaggccggcagggtgactac 269 ||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 402 gctcttggaggcacacacggcgtgcccaaggtgcattataaaggtcgtcagggtgactac 461 Query: 270 tatgtcatgattatggatatgctggggcctagcttgtgggattcctggaatttagcaggg 329 |||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||| Sbjct: 462 tatgtcatgattatggatatgctggggcctagtttgtgggattcatggaattcattaggc 521 Query: 330 cagactatgtcatcagaaatggtagcttgtattgctgcagaggccatctctatcctggaa 389 || | ||| |||| |||||||| ||||| ||||| ||| |||| || ||| ||||| Sbjct: 522 caatccatgccatcggaaatggtggcttgcattgccatggagtccatttccatcttggaa 581 Query: 390 agcatgcattctaaag 405 |||||||||||||||| Sbjct: 582 agcatgcattctaaag 597 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 1 tccccgacacggtccagataggagggtctcccgagtacagggtcgagaggaagctcggca 60 ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| |||| Sbjct: 184 tccccgacacggtccaggtcggaggatctcccgagtacaaggtcgagaggaagcttggca 243 Query: 61 aaggcgggtttggccacgtctt 82 |||| || || ||||| ||||| Sbjct: 244 aaggtggcttcggccatgtctt 265
>gb|AY105752.1| Zea mays PCO066784 mRNA sequence Length = 2154 Score = 190 bits (96), Expect = 2e-45 Identities = 171/196 (87%) Strand = Plus / Plus Query: 210 gctcttggaggtactcacggcgtgcccaaggtgcattataaaggccggcagggtgactac 269 ||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 307 gctcttggaggcacacacggcgtgcccaaggtgcattataaaggtcgtcagggtgactac 366 Query: 270 tatgtcatgattatggatatgctggggcctagcttgtgggattcctggaatttagcaggg 329 |||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||| Sbjct: 367 tatgtcatgattatggatatgctggggcctagtttgtgggattcatggaattcattaggc 426 Query: 330 cagactatgtcatcagaaatggtagcttgtattgctgcagaggccatctctatcctggaa 389 || | ||| |||| |||||||| ||||| ||||| ||| |||| || ||| ||||| Sbjct: 427 caatccatgccatcggaaatggtggcttgcattgccatggagtccatttccatcttggaa 486 Query: 390 agcatgcattctaaag 405 |||||||||||||||| Sbjct: 487 agcatgcattctaaag 502 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 1 tccccgacacggtccagataggagggtctcccgagtacagggtcgagaggaagctcggca 60 ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| |||| Sbjct: 87 tccccgacacggtccaggtcggaggatctcccgagtacaaggtcgagaggaagcttggca 146 Query: 61 aaggcgggtttggccacgtctt 82 |||| || || ||||| ||||| Sbjct: 147 aaggtggcttcggccatgtctt 168
>ref|NM_112214.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase AT3G13670 mRNA, complete cds Length = 2779 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 249 aaaggccggcagggtgactactatgtcatgattatggatatgctggggcctagcttgtgg 308 |||||| |||| || ||||| ||||||||| ||||||| ||||| ||||||||||| ||| Sbjct: 840 aaaggcaggcaaggagactattatgtcatggttatggacatgcttgggcctagcttatgg 899 Query: 309 gattcctggaatttagcagggcagactatgtcatcagaaatggtagcttgtattgc 364 |||| |||||| ||||||| | ||||| || |||||||||||||| ||||| Sbjct: 900 gatttatggaatacttcagggcaagcaatgtcctcggaaatggtagcttgcattgc 955
>gb|AY117204.1| Arabidopsis thaliana putative casein kinase (At3g13670) mRNA, complete cds Length = 2143 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 249 aaaggccggcagggtgactactatgtcatgattatggatatgctggggcctagcttgtgg 308 |||||| |||| || ||||| ||||||||| ||||||| ||||| ||||||||||| ||| Sbjct: 628 aaaggcaggcaaggagactattatgtcatggttatggacatgcttgggcctagcttatgg 687 Query: 309 gattcctggaatttagcagggcagactatgtcatcagaaatggtagcttgtattgc 364 |||| |||||| ||||||| | ||||| || |||||||||||||| ||||| Sbjct: 688 gatttatggaatacttcagggcaagcaatgtcctcggaaatggtagcttgcattgc 743
>gb|AY080703.1| Arabidopsis thaliana putative casein kinase (At3g13670) mRNA, complete cds Length = 2653 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 249 aaaggccggcagggtgactactatgtcatgattatggatatgctggggcctagcttgtgg 308 |||||| |||| || ||||| ||||||||| ||||||| ||||| ||||||||||| ||| Sbjct: 840 aaaggcaggcaaggagactattatgtcatggttatggacatgcttgggcctagcttatgg 899 Query: 309 gattcctggaatttagcagggcagactatgtcatcagaaatggtagcttgtattgc 364 |||| |||||| ||||||| | ||||| || |||||||||||||| ||||| Sbjct: 900 gatttatggaatacttcagggcaagcaatgtcctcggaaatggtagcttgcattgc 955
>dbj|AK100357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083K12, full insert sequence Length = 2696 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 243 cattataaaggccggcagggtgactactatgtcatgattatggatatgctggggcctagc 302 ||||||||||| ||||||| || |||||| ||||||||||||| ||| |||| || ||| Sbjct: 602 cattataaagggaggcagggggattactatatcatgattatggacatgttgggtccaagc 661 Query: 303 ttgtgggat 311 |||||||| Sbjct: 662 ctgtgggat 670
>dbj|AK072116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126I12, full insert sequence Length = 2431 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 243 cattataaaggccggcagggtgactactatgtcatgattatggatatgctggggcctagc 302 ||||||||||| ||||||| || |||||| ||||||||||||| ||| |||| || ||| Sbjct: 599 cattataaagggaggcagggggattactatatcatgattatggacatgttgggtccaagc 658 Query: 303 ttgtgggat 311 |||||||| Sbjct: 659 ctgtgggat 667
>gb|AF443205.1|AF443205 Chlamydomonas reinhardtii serine/threonine protein kinase (Mut9) mRNA, complete cds Length = 2100 Score = 50.1 bits (25), Expect = 0.006 Identities = 64/77 (83%) Strand = Plus / Plus Query: 234 cccaaggtgcattataaaggccggcagggtgactactatgtcatgattatggatatgctg 293 ||||||||||| || || |||| ||||| ||||| ||| ||||| | ||||| ||||| Sbjct: 610 cccaaggtgcactacaagggccagcaggatgacttctacatcatggtcatggacctgctg 669 Query: 294 gggcctagcttgtggga 310 || |||||||||||||| Sbjct: 670 ggccctagcttgtggga 686
>dbj|AP006347.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02G18, TM0334a, complete sequence Length = 77969 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 161 cagcaaggggtgcaactacggccctccgtacgagtggcatgtgta 205 |||||||||||||||||| | ||||| ||||||||||| ||||| Sbjct: 32786 cagcaaggggtgcaactatgcacctccttacgagtggcaagtgta 32830
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence Length = 105353 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Minus Query: 171 tgcaactacggccctccgtacgagtggcatgtgta 205 |||||||| |||||||| ||||||||||| ||||| Sbjct: 12720 tgcaactatggccctccttacgagtggcaagtgta 12686
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 gtgactactatgtcatgattat 283 |||||||||||||||||||||| Sbjct: 1199988 gtgactactatgtcatgattat 1200009
>dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMM17 Length = 80733 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 280 ttatggatatgctggggcctagcttgtgggatt 312 ||||||| ||||| ||||||||||| ||||||| Sbjct: 15365 ttatggacatgcttgggcctagcttatgggatt 15397
>ref|NM_128136.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase AT2G25760 transcript variant AT2G25760.1 mRNA, complete cds Length = 2604 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 280 ttatggatatgctggggcctagcttgtgggat 311 |||||||||| || ||||||||||| |||||| Sbjct: 844 ttatggatatccttgggcctagcttatgggat 875
>ref|NM_201803.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase AT2G25760 transcript variant AT2G25760.2 mRNA, complete cds Length = 2613 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 280 ttatggatatgctggggcctagcttgtgggat 311 |||||||||| || ||||||||||| |||||| Sbjct: 844 ttatggatatccttgggcctagcttatgggat 875
>ref|XM_467830.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgtcttcgtcggccgccgcc 96 |||||||||||||||||||| Sbjct: 895 cgtcttcgtcggccgccgcc 876
>ref|NM_191434.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2097 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 aaattcgagcacaacaccagcaaggggtgcaactacggccctccgtacgagtggca 199 |||||||||||| || ||| ||||| ||||| || |||||||| || |||||||| Sbjct: 523 aaattcgagcaccgcaacagtaagggttgcaattatggccctccatatgagtggca 578
>gb|AY070056.1| Arabidopsis thaliana At2g25760 mRNA sequence Length = 2695 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 280 ttatggatatgctggggcctagcttgtgggat 311 |||||||||| || ||||||||||| |||||| Sbjct: 844 ttatggatatccttgggcctagcttatgggat 875
>emb|X61207.1|ABHISHAFE A.brasilense hisB, H, A, F and E genes for imidazole glycerolphosphate dehydratase, glutamine amidotransferase, phosphorybosilformimino-5-amino-phosphorybosil-4- imidazolecarboxamide isomerase, cyclase and phosphorybosil-AMP-cyclohydrolase Length = 4746 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 ccacgtcttcgtcggccgccgcct 97 ||||||||||| |||||||||||| Sbjct: 4449 ccacgtcttcgccggccgccgcct 4472
>gb|AC159534.11| Medicago truncatula clone mth2-81a23, complete sequence Length = 120504 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 aaattcgagcacaacaccagcaaggggtgcaactacggccctccgtacgagtggca 199 ||||| ||||| || |||||||| ||||| || || || ||||| ||||||||||| Sbjct: 66850 aaatttgagcataaaaccagcaaagggtgtaattatggacctccttacgagtggca 66905
>gb|AC005395.3| Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence Length = 102004 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 280 ttatggatatgctggggcctagcttgtgggat 311 |||||||||| || ||||||||||| |||||| Sbjct: 88343 ttatggatatccttgggcctagcttatgggat 88374
>gb|AC093898.3| Homo sapiens BAC clone RP11-724A24 from 4, complete sequence Length = 183273 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tggaatttagcagggcagac 334 |||||||||||||||||||| Sbjct: 55554 tggaatttagcagggcagac 55573
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgtcttcgtcggccgccgcc 96 |||||||||||||||||||| Sbjct: 31621434 cgtcttcgtcggccgccgcc 31621415
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 aaattcgagcacaacaccagcaaggggtgcaactacggccctccgtacgagtggca 199 |||||||||||| || ||| ||||| ||||| || |||||||| || |||||||| Sbjct: 32611486 aaattcgagcaccgcaacagtaagggttgcaattatggccctccatatgagtggca 32611541
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 aaattcgagcacaacaccagcaaggggtgcaactacggccctccgtacgagtggca 199 |||||||||||| || ||| ||||| ||||| || |||||||| || |||||||| Sbjct: 74281 aaattcgagcaccgcaacagtaagggttgcaattatggccctccatatgagtggca 74336
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0431B06 Length = 154796 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgtcttcgtcggccgccgcc 96 |||||||||||||||||||| Sbjct: 111994 cgtcttcgtcggccgccgcc 111975
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgtcttcgtcggccgccgcc 96 |||||||||||||||||||| Sbjct: 1221 cgtcttcgtcggccgccgcc 1202
>dbj|AK120893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029O03, full insert sequence Length = 2788 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 aaattcgagcacaacaccagcaaggggtgcaactacggccctccgtacgagtggca 199 |||||||||||| || ||| ||||| ||||| || |||||||| || |||||||| Sbjct: 692 aaattcgagcaccgcaacagtaagggttgcaattatggccctccatatgagtggca 747
>dbj|AK071003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076N19, full insert sequence Length = 1891 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgtcttcgtcggccgccgcc 96 |||||||||||||||||||| Sbjct: 893 cgtcttcgtcggccgccgcc 874
>dbj|AK069612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A22, full insert sequence Length = 2851 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 144 aaattcgagcacaacaccagcaaggggtgcaactacggccctccgtacgagtggca 199 |||||||||||| || ||| ||||| ||||| || |||||||| || |||||||| Sbjct: 766 aaattcgagcaccgcaacagtaagggttgcaattatggccctccatatgagtggca 821 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,739,332 Number of Sequences: 3902068 Number of extensions: 2739332 Number of successful extensions: 52554 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52465 Number of HSP's gapped (non-prelim): 84 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)