ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal15n20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced protein Length = 2897 Score = 299 bits (151), Expect = 3e-78 Identities = 179/187 (95%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 173 aggtacggtaacggaatagctgtaaaatgcctcctctacaatgccactggtgccactttg 232 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2304 aggtacggtaacggaatagctgtaaaatgcctcatctacaatgccactggtgccactttg 2363 Query: 233 aactttgctaagtacaacgattggcacggccatatctatgatacaccctacccatcagat 292 | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2364 agcttggctaagtacaacgattggcacggccatatctatgatactccctacccatcagat 2423 Query: 293 attcagaatgggcaaatggggtgcattcctccacgtccacccaagtggagctgccgctgg 352 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||| Sbjct: 2424 attcagaatgggc-aatggggtgcattcctccacgtccacccaagtggtgctgcggttgg 2482 Query: 353 ttcagct 359 ||||||| Sbjct: 2483 ttcagct 2489 Score = 210 bits (106), Expect = 2e-51 Identities = 152/166 (91%), Gaps = 1/166 (0%) Strand = Plus / Plus Query: 3 aatggcctctggnagtgtttggtacccccatttcagcgcagacggtgatagccactggag 62 ||||||||| || ||||||||||||||||||||| | | ||||||||||||||||||| | Sbjct: 2006 aatggcctcagg-agtgtttggtacccccatttcggagaagacggtgatagccactggtg 2064 Query: 63 agtataaggaacccattacccaaaaagatgttgcagactatgccatgaagatgatcaacg 122 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 2065 agtataaggaacccattactcaaaaggatgttgcagactatgccatgaagatgatcaacg 2124 Query: 123 ccggtggtaaggatgttaacgcgcaaaagttcgtcgacaacctcaa 168 |||||||||||||| ||||||| | || ||||||||||| ||||| Sbjct: 2125 ccggtggtaaggatattaacgcactaaccttcgtcgacaatctcaa 2170
>gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complete sequence Length = 122076 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 286 atcagatattcagaatgggcaaat 309 |||||||||||||||||||||||| Sbjct: 72577 atcagatattcagaatgggcaaat 72554
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 229 tttgaactttgctaagtacaac 250 |||||||||||||||||||||| Sbjct: 1607181 tttgaactttgctaagtacaac 1607160
>gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, complete sequence Length = 170184 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ctatgccatgaagatgatcaa 120 ||||||||||||||||||||| Sbjct: 15554 ctatgccatgaagatgatcaa 15574
>emb|AL121717.13|HSJ214H13 Human DNA sequence from clone RP1-214H13 on chromosome 6q15-16.2, complete sequence Length = 59031 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 tgtttggtacccccatttcag 38 ||||||||||||||||||||| Sbjct: 30219 tgtttggtacccccatttcag 30199
>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence Length = 185763 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ctatgccatgaagatgatcaa 120 ||||||||||||||||||||| Sbjct: 152410 ctatgccatgaagatgatcaa 152430
>gb|AC150866.2| Bos taurus BAC CH240-290G4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 170911 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 atcagatattcagaatgggcaaat 309 |||||||||||||||| ||||||| Sbjct: 24175 atcagatattcagaataggcaaat 24198
>gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complete sequence Length = 210558 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 ctacaatgccactggtgccacttt 231 |||||||||||||||| ||||||| Sbjct: 18137 ctacaatgccactggtcccacttt 18114
>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188972 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 gaagatgatcaacgccggtggtaa 132 ||||||||||||||| |||||||| Sbjct: 160083 gaagatgatcaacgctggtggtaa 160060 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,322,310 Number of Sequences: 3902068 Number of extensions: 2322310 Number of successful extensions: 42245 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42226 Number of HSP's gapped (non-prelim): 18 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
