ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal15n19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465164.1| Oryza sativa (japonica cultivar-group), mRNA Length = 804 Score = 127 bits (64), Expect = 3e-26 Identities = 136/160 (85%) Strand = Plus / Plus Query: 4 tcgactcggcgatcctcgccgtcgtcatcgccttccttctccccctccgcctgctctccc 63 ||||| ||||||||||||||| |||| |||||||||| |||||||||||||| ||||||| Sbjct: 8 tcgacgcggcgatcctcgccgccgtcgtcgccttcctcctccccctccgccttctctccc 67 Query: 64 tcttcgcccgccagaactcctccggcagcgtaggcgacctccgccgatcctgcgccgccc 123 || ||||||||| | | | ||||||||| |||||||||||||| ||||||| ||| Sbjct: 68 tcctcgcccgcctcagcctcaccggcagcgccggcgacctccgccgtccctgcgcggcct 127 Query: 124 tcgccatcgcggccgcgctcctcgccaccttcttcgccct 163 |||| || | ||||||||||||||| || |||||||||| Sbjct: 128 tcgcgctctccgccgcgctcctcgccgccatcttcgccct 167
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 127 bits (64), Expect = 3e-26 Identities = 136/160 (85%) Strand = Plus / Minus Query: 4 tcgactcggcgatcctcgccgtcgtcatcgccttccttctccccctccgcctgctctccc 63 ||||| ||||||||||||||| |||| |||||||||| |||||||||||||| ||||||| Sbjct: 12014512 tcgacgcggcgatcctcgccgccgtcgtcgccttcctcctccccctccgccttctctccc 12014453 Query: 64 tcttcgcccgccagaactcctccggcagcgtaggcgacctccgccgatcctgcgccgccc 123 || ||||||||| | | | ||||||||| |||||||||||||| ||||||| ||| Sbjct: 12014452 tcctcgcccgcctcagcctcaccggcagcgccggcgacctccgccgtccctgcgcggcct 12014393 Query: 124 tcgccatcgcggccgcgctcctcgccaccttcttcgccct 163 |||| || | ||||||||||||||| || |||||||||| Sbjct: 12014392 tcgcgctctccgccgcgctcctcgccgccatcttcgccct 12014353 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 tcgccatcgcggccgcgctcctcgc 148 ||||| ||||||||||||||||||| Sbjct: 4185481 tcgccttcgcggccgcgctcctcgc 4185457
>dbj|AP005743.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0543C11 Length = 159075 Score = 127 bits (64), Expect = 3e-26 Identities = 136/160 (85%) Strand = Plus / Minus Query: 4 tcgactcggcgatcctcgccgtcgtcatcgccttccttctccccctccgcctgctctccc 63 ||||| ||||||||||||||| |||| |||||||||| |||||||||||||| ||||||| Sbjct: 111790 tcgacgcggcgatcctcgccgccgtcgtcgccttcctcctccccctccgccttctctccc 111731 Query: 64 tcttcgcccgccagaactcctccggcagcgtaggcgacctccgccgatcctgcgccgccc 123 || ||||||||| | | | ||||||||| |||||||||||||| ||||||| ||| Sbjct: 111730 tcctcgcccgcctcagcctcaccggcagcgccggcgacctccgccgtccctgcgcggcct 111671 Query: 124 tcgccatcgcggccgcgctcctcgccaccttcttcgccct 163 |||| || | ||||||||||||||| || |||||||||| Sbjct: 111670 tcgcgctctccgccgcgctcctcgccgccatcttcgccct 111631
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 116 cgccgccctcgccatcgcggccgcgctcctcgcc 149 ||||||||||||| |||| ||||||||||||||| Sbjct: 1558946 cgccgccctcgccctcgccgccgcgctcctcgcc 1558913 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 123 ctcgccatcgcggccgcgctcctcgc 148 |||||| ||||||||||||||||||| Sbjct: 2539345 ctcgccgtcgcggccgcgctcctcgc 2539370 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 cgccgccctcgccatcgcggccgc 139 ||||| |||||||||||||||||| Sbjct: 2028552 cgccgtcctcgccatcgcggccgc 2028575
>ref|XM_470627.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1875 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 15 atcctcgccgtcgtcatcgccttcc 39 ||||||||||||||||||||||||| Sbjct: 22 atcctcgccgtcgtcatcgccttcc 46
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 15 atcctcgccgtcgtcatcgccttcc 39 ||||||||||||||||||||||||| Sbjct: 7040083 atcctcgccgtcgtcatcgccttcc 7040059 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcgccgccctcgccatcgcggccgc 139 ||||||||||||||||||| ||||| Sbjct: 12467577 gcgccgccctcgccatcgccgccgc 12467553
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 15 atcctcgccgtcgtcatcgccttcc 39 ||||||||||||||||||||||||| Sbjct: 42282 atcctcgccgtcgtcatcgccttcc 42306
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 15 atcctcgccgtcgtcatcgccttcc 39 ||||||||||||||||||||||||| Sbjct: 7037978 atcctcgccgtcgtcatcgccttcc 7037954 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcgccgccctcgccatcgcggccgc 139 ||||||||||||||||||| ||||| Sbjct: 12464340 gcgccgccctcgccatcgccgccgc 12464316
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 34 ccttccttctccccctccgcctg 56 ||||||||||||||||||||||| Sbjct: 1187713 ccttccttctccccctccgcctg 1187735
>ref|XM_571081.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNE04270) partial mRNA Length = 2718 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 34 ccttccttctccccctccgcctg 56 ||||||||||||||||||||||| Sbjct: 2615 ccttccttctccccctccgcctg 2593
>gb|AF263282.1|AF263282 Filobasidiella neoformans var. neoformans clone CRYP01, complete sequence Length = 109900 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 34 ccttccttctccccctccgcctg 56 ||||||||||||||||||||||| Sbjct: 57894 ccttccttctccccctccgcctg 57872
>gb|AC147992.3| Mus musculus BAC clone RP24-384K8 from chromosome 18, complete sequence Length = 239075 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 36 ttccttctccccctccgcctgctctccctc 65 |||||||||||||||| ||| ||||||||| Sbjct: 186675 ttccttctccccctcctcctcctctccctc 186704
>gb|AC124432.5| Mus musculus BAC clone RP24-243L15 from chromosome 18, complete sequence Length = 160728 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 36 ttccttctccccctccgcctgctctccctc 65 |||||||||||||||| ||| ||||||||| Sbjct: 54842 ttccttctccccctcctcctcctctccctc 54813
>emb|BX537326.9| Zebrafish DNA sequence from clone DKEY-4I23 in linkage group 2, complete sequence Length = 237869 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 ctggaaaaacaatgcaaaagca 317 |||||||||||||||||||||| Sbjct: 80559 ctggaaaaacaatgcaaaagca 80580
>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174551 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagctg 272 |||||||||||||||||||||| Sbjct: 17820 ggagatcgagcagctgcagctg 17841
>ref|NM_168155.1| Drosophila melanogaster logjam CG10733-RC, transcript variant C (loj), mRNA Length = 1068 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagctg 272 |||||||||||||||||||||| Sbjct: 578 ggagatcgagcagctgcagctg 599
>ref|NM_168154.1| Drosophila melanogaster logjam CG10733-RA, transcript variant A (loj), mRNA Length = 1028 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagctg 272 |||||||||||||||||||||| Sbjct: 538 ggagatcgagcagctgcagctg 559
>ref|NM_139770.2| Drosophila melanogaster logjam CG10733-RB, transcript variant B (loj), mRNA Length = 1049 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagctg 272 |||||||||||||||||||||| Sbjct: 559 ggagatcgagcagctgcagctg 580
>gb|AY061384.1| Drosophila melanogaster LD30746 full length cDNA Length = 1084 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagctg 272 |||||||||||||||||||||| Sbjct: 540 ggagatcgagcagctgcagctg 561
>emb|AL672159.14| Mouse DNA sequence from clone RP23-145B5 on chromosome 4, complete sequence Length = 101291 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctcttc 68 ||||||||||| ||||| ||| |||||||||||| Sbjct: 2066 cttccttctcctcctcctcctcctctccctcttc 2099
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 ggcgatcctcgccgtcgtcatc 32 |||||||||||||||||||||| Sbjct: 8107560 ggcgatcctcgccgtcgtcatc 8107581
>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete sequence Length = 315944 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagctg 272 |||||||||||||||||||||| Sbjct: 282284 ggagatcgagcagctgcagctg 282305
>gb|AY257539.1| Pseudomonas aeruginosa strain C plasmid pKLC102 transposon TNCP23, complete sequence Length = 23061 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cgccatcgcggccgcgctcct 145 ||||||||||||||||||||| Sbjct: 18949 cgccatcgcggccgcgctcct 18929
>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155643 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 37 tccttctccccctccgcctgctctccctc 65 ||||||||||||||| ||| ||||||||| Sbjct: 30248 tccttctccccctcctcctcctctccctc 30220
>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03, from chromosome 3, complete sequence Length = 124550 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gcgccgccctcgccatcgcggccgc 139 ||||||||||||||||||| ||||| Sbjct: 120364 gcgccgccctcgccatcgccgccgc 120388
>ref|XM_791979.1| PREDICTED: Strongylocentrotus purpuratus similar to CG6331-PA (LOC592457), mRNA Length = 1677 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cgtcatcgccttccttctccc 46 ||||||||||||||||||||| Sbjct: 1597 cgtcatcgccttccttctccc 1577
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cctgctctccctcttcgcccg 73 ||||||||||||||||||||| Sbjct: 111066 cctgctctccctcttcgcccg 111086
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcgccgccctcgccatcgcggccgc 139 ||||||||||||||||||| ||||| Sbjct: 125259 gcgccgccctcgccatcgccgccgc 125235
>emb|AJ783431.1| Pseudomonas stutzeri mutS gene for DNA mismatch repair protein MutS and partial fdxA gene for Ferredoxin I, strain ATCC 17587 Length = 3431 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 tcgagcagctgcagctgcagctcaa 280 ||||||||||||||| ||||||||| Sbjct: 1426 tcgagcagctgcagccgcagctcaa 1450
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcagctgcagctgcagctcaa 280 ||||||||||||||||||||| Sbjct: 1495454 gcagctgcagctgcagctcaa 1495434
>gb|AC073563.3| Mus musculus strain C57BL/6J chromosome 12 clone RP23-24I12, complete sequence Length = 205468 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 ccttctccccctccgcctgctctcc 62 |||||||||||||| |||||||||| Sbjct: 60811 ccttctccccctccccctgctctcc 60787
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 ccttctccccctccgcctgctctcc 62 |||||||||||||| |||||||||| Sbjct: 192109 ccttctccccctccccctgctctcc 192085
>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228043 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 37 tccttctccccctccgcctgctctccctc 65 ||||||||||||||| ||| ||||||||| Sbjct: 209037 tccttctccccctcctcctcctctccctc 209009
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 ttctccccctccgcctgctctccct 64 ||||||||||||| ||||||||||| Sbjct: 13784504 ttctccccctccgtctgctctccct 13784528 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 16973237 agcagctgcagctgcagctc 16973256
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 tcgccatcgcggccgcgctcctcgc 148 ||||| ||||||||||||||||||| Sbjct: 2295 tcgccttcgcggccgcgctcctcgc 2271
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 tcgccatcgcggccgcgctcctcgc 148 ||||| ||||||||||||||||||| Sbjct: 95495 tcgccttcgcggccgcgctcctcgc 95471
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 ttctccccctccgcctgctctccct 64 ||||||||||||| ||||||||||| Sbjct: 33988 ttctccccctccgtctgctctccct 34012
>dbj|AK120611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151J09, full insert sequence Length = 3516 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcgccgccctcgccatcgcggccgc 139 ||||||||||||||||||| ||||| Sbjct: 185 gcgccgccctcgccatcgccgccgc 161
>dbj|AK062746.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F08, full insert sequence Length = 779 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tcgccatcgcggccgcgctcctcgc 148 ||||| ||||||||||||||||||| Sbjct: 324 tcgccttcgcggccgcgctcctcgc 348
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 ccttctccccctccgcctgctctcc 62 |||||||||||||| |||||||||| Sbjct: 1974038 ccttctccccctccccctgctctcc 1974014
>dbj|AB037666.1| Streptomyces sp. CL190 genes for mevalonate kinase, diphosphomevalonate decarboxylase, phosphomevalonate kinase, hypothetical protein, 3-hydroxy-3-methylglutaryl CoA reductase, 3-hydroxy-3-methylglutaryl CoA synthase, complete cds Length = 6798 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 cgccgccctcgccatcgcggccgcg 140 ||||||||||||| ||||||||||| Sbjct: 1542 cgccgccctcgccgtcgcggccgcg 1566
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 gcgatcctcgccgtcgtcatcgcc 35 ||||||||||||||||| |||||| Sbjct: 2269 gcgatcctcgccgtcgtgatcgcc 2246
>gb|AC166359.3| Mus musculus BAC clone RP23-303I23 from chromosome 10, complete sequence Length = 195865 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gcagctgcagctgcagctca 279 |||||||||||||||||||| Sbjct: 151933 gcagctgcagctgcagctca 151914
>ref|XM_515797.1| PREDICTED: Pan troglodytes LOC459620 (LOC459620), mRNA Length = 3108 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 1445 agcagctgcagctgcagctc 1426
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold Length = 1471440 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 1409936 agcagctgcagctgcagctc 1409917
>ref|XM_598437.2| PREDICTED: Bos taurus similar to tripartite motif protein 39 (LOC520202), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 595 gagcagctgcagctgcagct 614
>ref|XM_957203.1| Neurospora crassa OR74A hypothetical protein (NCU07710.1) partial mRNA Length = 6015 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 5887 gagcagctgcagctgcagct 5868
>ref|XM_328415.1| Neurospora crassa OR74A hypothetical protein (NCU07710.1) partial mRNA Length = 6015 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 5887 gagcagctgcagctgcagct 5868
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 gcgccgccctcgccatcgcggccgcgct 142 |||||||||||| |||||||| |||||| Sbjct: 3027509 gcgccgccctcggcatcgcgggcgcgct 3027536
>gb|AE008975.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 1 of 256 of the complete sequence Length = 10581 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 51 cgcctgctctccctcttcgcccgccaga 78 |||||||||| || |||||||||||||| Sbjct: 4065 cgcctgctcttccccttcgcccgccaga 4038
>gb|AC092497.2| Sus scrofa clone RP44-30C22, complete sequence Length = 172144 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 110640 agcagctgcagctgcagctc 110621
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 cgccgtcgtcatcgccttcc 39 |||||||||||||||||||| Sbjct: 2443566 cgccgtcgtcatcgccttcc 2443547
>gb|AC183831.2| Pan troglodytes BAC clone CH251-280E18 from chromosome 7, complete sequence Length = 169210 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 139138 gagcagctgcagctgcagct 139119
>gb|AC105470.17| Rattus norvegicus 10 BAC CH230-192N7 (Children's Hospital Oakland Research Institute) complete sequence Length = 212491 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 34 ccttccttctccccctccgcctgctctc 61 |||||||||||||||||| ||| ||||| Sbjct: 204747 ccttccttctccccctcccccttctctc 204720
>ref|XM_753979.1| Ustilago maydis 521 hypothetical protein (UM02925.1) partial mRNA Length = 2310 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 atcctcgccgtcgtcatcgccttc 38 |||||||||||| ||||||||||| Sbjct: 327 atcctcgccgtcatcatcgccttc 350
>ref|XM_538903.2| PREDICTED: Canis familiaris similar to kinesin family member 6 (LOC481782), mRNA Length = 2517 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 tggagatcgagcagctgcagctgc 273 ||||||||||||| |||||||||| Sbjct: 1982 tggagatcgagcacctgcagctgc 2005
>ref|XM_547209.2| PREDICTED: Canis familiaris hypothetical LOC490088 (LOC490088), mRNA Length = 1563 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cagctgcagctgcagctcaa 280 |||||||||||||||||||| Sbjct: 808 cagctgcagctgcagctcaa 827
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggagatcgagcagctgcagc 270 |||||||||||||||||||| Sbjct: 3734922 ggagatcgagcagctgcagc 3734941
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 gcgatcctcgccgtcgtcatcgcc 35 ||||||||||||||||| |||||| Sbjct: 115411 gcgatcctcgccgtcgtgatcgcc 115434
>gb|AC157915.4| Mus musculus chromosome 19, clone RP24-294L7, complete sequence Length = 148975 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cagctgcagctcaaccgatt 286 |||||||||||||||||||| Sbjct: 74815 cagctgcagctcaaccgatt 74796
>emb|AL023780.1|SPBC14F5 S.pombe chromosome II cosmid c14F5 Length = 34849 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 18129 gagcagctgcagctgcagct 18110
>gb|AC090396.9| Homo sapiens chromosome 18, clone RP11-868G15, complete sequence Length = 215375 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cagctgcagctgcagctcaa 280 |||||||||||||||||||| Sbjct: 208111 cagctgcagctgcagctcaa 208130
>gb|AC107032.4| Homo sapiens 12 BAC RP11-613M5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162515 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 98902 gagcagctgcagctgcagct 98921
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 gcgatcctcgccgtcgtcatcgcc 35 ||||||||||||| |||||||||| Sbjct: 3675356 gcgatcctcgccggcgtcatcgcc 3675333
>gb|AE005873.1| Caulobacter crescentus CB15 section 199 of 359 of the complete genome Length = 10022 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 cgccgccctcgccatcgcggccgc 139 |||||||||||||||||| ||||| Sbjct: 7791 cgccgccctcgccatcgccgccgc 7814
>gb|AE012227.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 135 of 460 of the complete genome Length = 10155 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gccgccctcgccatcgcggc 136 |||||||||||||||||||| Sbjct: 1916 gccgccctcgccatcgcggc 1897
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctcggcgatcctcgccgtcg 27 |||||||||||||||||||| Sbjct: 187436 ctcggcgatcctcgccgtcg 187417
>gb|AC093178.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0091B12, complete sequence Length = 137568 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctct 66 |||||||||||| ||| |||| |||||||||| Sbjct: 11911 cttccttctcccgctcagcctcctctccctct 11942 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctct 66 |||||||||||| ||| |||| |||||||||| Sbjct: 7528 cttccttctcccgctcagcctcctctccctct 7559
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 51 cgcctgctctccctcttcgcccgccaga 78 |||||||||| || |||||||||||||| Sbjct: 3863 cgcctgctcttccccttcgcccgccaga 3836
>gb|AC090354.8| Homo sapiens chromosome 18, clone RP11-735P10, complete sequence Length = 211162 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cagctgcagctgcagctcaa 280 |||||||||||||||||||| Sbjct: 109050 cagctgcagctgcagctcaa 109069
>gb|DQ070869.1| Rattus norvegicus SALM1 mRNA, complete cds Length = 2367 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 2212 gagcagctgcagctgcagct 2193
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctccgccgatcctgcgccgc 121 |||||||||||||||||||| Sbjct: 4090634 ctccgccgatcctgcgccgc 4090615 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 atcctcgccgtcgtcatcgc 34 |||||||||||||||||||| Sbjct: 2918012 atcctcgccgtcgtcatcgc 2918031
>ref|XM_627219.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_3230), partial mRNA Length = 2460 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 1810 gagcagctgcagctgcagct 1791
>ref|NM_001022659.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC14F5.07), partial mRNA Length = 3729 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 652 gagcagctgcagctgcagct 633
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgagcagctgcagctgcagc 276 |||||||||||||||||||| Sbjct: 498663 cgagcagctgcagctgcagc 498682
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gccgccctcgccatcgcggc 136 |||||||||||||||||||| Sbjct: 3549766 gccgccctcgccatcgcggc 3549785
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ggagatcgagcagctgcagc 270 |||||||||||||||||||| Sbjct: 2301173 ggagatcgagcagctgcagc 2301154
>dbj|AK086352.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930023H24 product:unclassifiable, full insert sequence Length = 1870 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gcagctgcagctgcagctca 279 |||||||||||||||||||| Sbjct: 1368 gcagctgcagctgcagctca 1387
>gb|DP000030.1| Sus scrofa target 116 genomic scaffold Length = 380805 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 agcagctgcagctgcagctcaacc 282 ||||||||||||| |||||||||| Sbjct: 91588 agcagctgcagctccagctcaacc 91611
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tcctcgccgtcgtcatcgcc 35 |||||||||||||||||||| Sbjct: 14311314 tcctcgccgtcgtcatcgcc 14311333 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctct 66 |||||||||||| ||| |||| |||||||||| Sbjct: 6808884 cttccttctcccgctcagcctcctctccctct 6808915 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctct 66 |||||||||||| ||| |||| |||||||||| Sbjct: 6804501 cttccttctcccgctcagcctcctctccctct 6804532
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cctcgccaccttcttcgccc 162 |||||||||||||||||||| Sbjct: 11461461 cctcgccaccttcttcgccc 11461480
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tcctcgccgtcgtcatcgcc 35 |||||||||||||||||||| Sbjct: 58589 tcctcgccgtcgtcatcgcc 58608
>gb|AC153942.8| Mus musculus 10 BAC RP24-174M19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 146201 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gcagctgcagctgcagctca 279 |||||||||||||||||||| Sbjct: 89095 gcagctgcagctgcagctca 89114
>ref|XM_236914.3| PREDICTED: Rattus norvegicus leucine rich repeat and fibronectin type III domain containing 2 (predicted) (Lrfn2_predicted), mRNA Length = 6288 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gagcagctgcagctgcagct 277 |||||||||||||||||||| Sbjct: 5758 gagcagctgcagctgcagct 5739
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 gcggccgcgctcctcgccaccttc 155 ||||||| |||||||||||||||| Sbjct: 607641 gcggccgagctcctcgccaccttc 607618
>gb|BC088670.1| Xenopus laevis lysyl oxidase-like 1, mRNA (cDNA clone MGC:99057 IMAGE:7203304), complete cds Length = 1968 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccccctccgcctgctctc 61 |||||||||||||||||||| Sbjct: 648 ctccccctccgcctgctctc 629
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03 Length = 133019 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cctcgccaccttcttcgccc 162 |||||||||||||||||||| Sbjct: 30704 cctcgccaccttcttcgccc 30723
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 103050 agcagctgcagctgcagctc 103069
>dbj|AK120288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C15, full insert sequence Length = 1790 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 1132 agcagctgcagctgcagctc 1151
>dbj|AK119212.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E06, full insert sequence Length = 1543 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agcagctgcagctgcagctc 278 |||||||||||||||||||| Sbjct: 1015 agcagctgcagctgcagctc 1034
>ref|XM_320879.2| Anopheles gambiae str. PEST ENSANGP00000019249 (ENSANGG00000016760), partial mRNA Length = 585 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 tcgcccgccagaactcctccggca 90 ||||||||||| |||||||||||| Sbjct: 89 tcgcccgccaggactcctccggca 112
>ref|NM_210936.1| Eremothecium gossypii AFR035Wp (AFR035W), mRNA Length = 2160 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgagcagctgcagctgcagc 276 |||||||||||||||||||| Sbjct: 135 cgagcagctgcagctgcagc 154
>gb|AC149606.6| Mus musculus BAC clone RP23-466P2 from 7, complete sequence Length = 214153 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgggactggacattcagact 389 |||||||||||||||||||| Sbjct: 143507 tgggactggacattcagact 143488
>emb|AJ919280.1| Xenopus laevis mRNA for lysyl oxidase-like 1 (loxl-1 gene) Length = 1863 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccccctccgcctgctctc 61 |||||||||||||||||||| Sbjct: 553 ctccccctccgcctgctctc 534
>gb|AC002327.1|AC002327 Mus musculus chromosome 7, clone 19K5, complete sequence Length = 159515 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgggactggacattcagact 389 |||||||||||||||||||| Sbjct: 71097 tgggactggacattcagact 71078
>gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15_K_2, complete sequence Length = 156763 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 agctgcagctgcagctcaac 281 |||||||||||||||||||| Sbjct: 126142 agctgcagctgcagctcaac 126123
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 cgccgtcgtcatcgccttcc 39 |||||||||||||||||||| Sbjct: 186408 cgccgtcgtcatcgccttcc 186427
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tcctcgccgtcgtcatcgcc 35 |||||||||||||||||||| Sbjct: 14319556 tcctcgccgtcgtcatcgcc 14319575 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctct 66 |||||||||||| ||| |||| |||||||||| Sbjct: 6812170 cttccttctcccgctcagcctcctctccctct 6812201 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 cttccttctccccctccgcctgctctccctct 66 |||||||||||| ||| |||| |||||||||| Sbjct: 6807787 cttccttctcccgctcagcctcctctccctct 6807818
>gb|AC102553.8| Mus musculus chromosome 19, clone RP23-159D6, complete sequence Length = 181534 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cagctgcagctcaaccgatt 286 |||||||||||||||||||| Sbjct: 179137 cagctgcagctcaaccgatt 179118 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,243,291 Number of Sequences: 3902068 Number of extensions: 3243291 Number of successful extensions: 92784 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90276 Number of HSP's gapped (non-prelim): 2505 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
