ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal15n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome... 38 5.3
2gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome... 38 5.3
3gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, comple... 38 5.3
4gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.34... 38 5.3

>gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome 7, complete sequence
          Length = 155547

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     aagcacccccatgctgccc 112
              |||||||||||||||||||
Sbjct: 124172 aagcacccccatgctgccc 124154



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>gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome 7, complete sequence
          Length = 190840

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    aagcacccccatgctgccc 112
             |||||||||||||||||||
Sbjct: 93322 aagcacccccatgctgccc 93304



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>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence
          Length = 148824

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    agcacccccatgctgcccc 113
             |||||||||||||||||||
Sbjct: 69762 agcacccccatgctgcccc 69744



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>gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.349_A_8, complete sequence
          Length = 169045

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     ccatcgcctatgctctctc 25
             |||||||||||||||||||
Sbjct: 96323 ccatcgcctatgctctctc 96341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 489,303
Number of Sequences: 3902068
Number of extensions: 489303
Number of successful extensions: 35488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35482
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 94
effective length of database: 17,151,101,840
effective search space: 1612203572960
effective search space used: 1612203572960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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