ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal16c10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 216 bits (109), Expect = 5e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 3 agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62 ||||| ||| ||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct: 2978390 agggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 2978449 Query: 63 tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122 ||||| ||||||||||||||||| ||||||| || ||||| ||||| || |||||||| Sbjct: 2978450 tacctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggt 2978509 Query: 123 tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182 ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2978510 tgctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgcc 2978569 Query: 183 gcactcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagc 242 || ||||| |||||||||||||| || | ||||||||||| ||||| ||||| |||||| Sbjct: 2978570 gctctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagc 2978629 Query: 243 ccggcaagatttctcaa 259 || ||||| |||||||| Sbjct: 2978630 ccagcaaggtttctcaa 2978646
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 216 bits (109), Expect = 5e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 3 agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62 ||||| ||| ||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct: 24445 agggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 24504 Query: 63 tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122 ||||| ||||||||||||||||| ||||||| || ||||| ||||| || |||||||| Sbjct: 24505 tacctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggt 24564 Query: 123 tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182 ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 24565 tgctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgcc 24624 Query: 183 gcactcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagc 242 || ||||| |||||||||||||| || | ||||||||||| ||||| ||||| |||||| Sbjct: 24625 gctctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagc 24684 Query: 243 ccggcaagatttctcaa 259 || ||||| |||||||| Sbjct: 24685 ccagcaaggtttctcaa 24701
>dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full insert sequence Length = 1364 Score = 216 bits (109), Expect = 5e-53 Identities = 220/257 (85%) Strand = Plus / Plus Query: 3 agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62 ||||| ||| ||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct: 919 agggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 978 Query: 63 tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122 ||||| ||||||||||||||||| ||||||| || ||||| ||||| || |||||||| Sbjct: 979 tacctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggt 1038 Query: 123 tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182 ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1039 tgctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgcc 1098 Query: 183 gcactcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagc 242 || ||||| |||||||||||||| || | ||||||||||| ||||| ||||| |||||| Sbjct: 1099 gctctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagc 1158 Query: 243 ccggcaagatttctcaa 259 || ||||| |||||||| Sbjct: 1159 ccagcaaggtttctcaa 1175
>gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence Length = 711 Score = 202 bits (102), Expect = 7e-49 Identities = 216/254 (85%) Strand = Plus / Plus Query: 6 gtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgctac 65 |||||||||||||| |||| ||||||||||| ||||| |||||||| ||||| |||||| Sbjct: 399 gtgtccagccagctgaagaaggaggagggcgctgaggtggtcgcggagcaggcgtgctac 458 Query: 66 ctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaagggatgc 125 || |||||||||| ||||||||||||||||| ||||| || || || ||||| || ||| Sbjct: 459 ctgccgtgcaccgccgacgggctgccggtcatcggggagataccaggcgtgaaagggtgc 518 Query: 126 tacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgcagca 185 || || || || || |||||||||||||| |||||||||| ||| | ||||| ||||| Sbjct: 519 tatgtggccacgggccacagctgctggggtatcctcaatggtccggccaccggcgcagcc 578 Query: 186 ctcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagcccg 245 ||||||||||||||||| || || || |||||||||||||||| | ||| ||||||||| Sbjct: 579 ctcgccgagctcatcctggacggcaagtccaagatcgttgatctcgagcctttcagcccg 638 Query: 246 gcaagatttctcaa 259 ||||| |||||||| Sbjct: 639 gcaaggtttctcaa 652
>gb|AY105159.1| Zea mays PCO075778 mRNA sequence Length = 604 Score = 202 bits (102), Expect = 7e-49 Identities = 216/254 (85%) Strand = Plus / Minus Query: 6 gtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgctac 65 |||||||||||||| |||| ||||||||||| ||||| |||||||| ||||| |||||| Sbjct: 435 gtgtccagccagctgaagaaggaggagggcgctgaggtggtcgcggagcaggcgtgctac 376 Query: 66 ctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaagggatgc 125 || |||||||||| ||||||||||||||||| ||||| || || || ||||| || ||| Sbjct: 375 ctgccgtgcaccgccgacgggctgccggtcatcggggagataccaggcgtgaaagggtgc 316 Query: 126 tacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgcagca 185 || || || || || |||||||||||||| |||||||||| ||| | ||||| ||||| Sbjct: 315 tatgtggccacgggccacagctgctggggtatcctcaatggtccggccaccggcgcagcc 256 Query: 186 ctcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagcccg 245 ||||||||||||||||| || || || |||||||||||||||| | ||| ||||||||| Sbjct: 255 ctcgccgagctcatcctggacggcaagtccaagatcgttgatctcgagcctttcagcccg 196 Query: 246 gcaagatttctcaa 259 ||||| |||||||| Sbjct: 195 gcaaggtttctcaa 182
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 129 bits (65), Expect = 8e-27 Identities = 167/201 (83%) Strand = Plus / Minus Query: 3 agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62 ||||||||||||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct: 23298254 agggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 23298195 Query: 63 tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122 ||| | ||||||||| ||||||| ||||||| || || || ||||| ||||||||||| Sbjct: 23298194 tacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaagggt 23298135 Query: 123 tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182 |||||||| || ||||||||| || | ||||| |||||||| ||||| | ||||| || Sbjct: 23298134 tgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggcgct 23298075 Query: 183 gcactcgccgagctcatcctc 203 || ||||| |||||||||||| Sbjct: 23298074 gcgctcgcggagctcatcctc 23298054
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 129 bits (65), Expect = 8e-27 Identities = 167/201 (83%) Strand = Plus / Minus Query: 3 agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62 ||||||||||||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct: 23952 agggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 23893 Query: 63 tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122 ||| | ||||||||| ||||||| ||||||| || || || ||||| ||||||||||| Sbjct: 23892 tacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaagggt 23833 Query: 123 tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182 |||||||| || ||||||||| || | ||||| |||||||| ||||| | ||||| || Sbjct: 23832 tgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggcgct 23773 Query: 183 gcactcgccgagctcatcctc 203 || ||||| |||||||||||| Sbjct: 23772 gcgctcgcggagctcatcctc 23752
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 129 bits (65), Expect = 8e-27 Identities = 167/201 (83%) Strand = Plus / Minus Query: 3 agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62 ||||||||||||||||| |||| ||||| ||||| ||||| || ||||| ||||| ||| Sbjct: 84996 agggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 84937 Query: 63 tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122 ||| | ||||||||| ||||||| ||||||| || || || ||||| ||||||||||| Sbjct: 84936 tacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaagggt 84877 Query: 123 tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182 |||||||| || ||||||||| || | ||||| |||||||| ||||| | ||||| || Sbjct: 84876 tgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggcgct 84817 Query: 183 gcactcgccgagctcatcctc 203 || ||||| |||||||||||| Sbjct: 84816 gcgctcgcggagctcatcctc 84796
>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence Length = 230293 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 139 ggcacagctgctgggggatcctc 161 ||||||||||||||||||||||| Sbjct: 190398 ggcacagctgctgggggatcctc 190376
>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete sequence Length = 175562 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 gctcaagacagaggagggcgc 37 ||||||||||||||||||||| Sbjct: 118017 gctcaagacagaggagggcgc 118037
>ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3584.2), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cactcgccgagctcatcctc 203 |||||||||||||||||||| Sbjct: 148 cactcgccgagctcatcctc 129
>gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete sequence Length = 28233 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 99 ggggaaatgcccggggtgaagggatgctacgttgcaaccgggcacagctgctgggg 154 ||||| || |||||||||||||| || || ||||| || ||||||| ||| ||||| Sbjct: 16800 ggggagattcccggggtgaagggttgttatgttgccactgggcacaactgttgggg 16855
>emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in linkage group 5, complete sequence Length = 168673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 atttctcaacaacaagaaga 270 |||||||||||||||||||| Sbjct: 22874 atttctcaacaacaagaaga 22893
>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene, complete cds Length = 4688 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cactcgccgagctcatcctc 203 |||||||||||||||||||| Sbjct: 3908 cactcgccgagctcatcctc 3889
>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence Length = 158692 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 agatttctcaacaacaagaa 268 |||||||||||||||||||| Sbjct: 68714 agatttctcaacaacaagaa 68733
>gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OABb-520P24, complete sequence Length = 142317 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 ggggacaccaaatcaaataatgta 392 |||||||| ||||||||||||||| Sbjct: 3496 ggggacacaaaatcaaataatgta 3519 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,283,351 Number of Sequences: 3902068 Number of extensions: 3283351 Number of successful extensions: 53699 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53632 Number of HSP's gapped (non-prelim): 67 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
