>LRP12_HUMAN (Q9Y561) Low-density lipoprotein receptor-related protein 12|
           precursor (Suppressor of tumorigenicity protein 7)
          Length = 859

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = -1

Query: 243 PQSRQMCVALAFCESDNFRPNRGGAGLLGRRFTSISPPPLLTTKY--------TESGFAW 88
           P +  +   +  C S + +  RGG    GR  TS+ PP +   ++           G  W
Sbjct: 680 PPTTAVEATVGACASSSTQSTRGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRW 739

Query: 87  MAVLVNPSLSAGHNSSPKKLL 25
           +   +  S S   N SP + L
Sbjct: 740 VRFTLGRSSSLSQNQSPLRQL 760

>LRP12_MACFA (Q9BE74) Low-density lipoprotein receptor-related protein 12|
           (Fragment)
          Length = 701

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = -1

Query: 243 PQSRQMCVALAFCESDNFRPNRGGAGLLGRRFTSISPPPLLTTKY--------TESGFAW 88
           P +  +   +  C S + +  RGG    GR  TS+ PP +   ++           G  W
Sbjct: 522 PPTTAVEATVGACASSSTQSARGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRW 581

Query: 87  MAVLVNPSLSAGHNSSPKKLL 25
           +   +  S S   N SP + L
Sbjct: 582 VRFTLGRSSSVSQNQSPLRQL 602

>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1473

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 122  SRGGGDIDVKR-LPKRPAPPRFGRKLSDSQKARATHICLD 238
            ++ G  + VKR  PK+PAP +  +K S+S+   A++  +D
Sbjct: 1193 AKSGAAVKVKRQAPKKPAPKKTTKKASESETTEASYSAMD 1232

>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING|
           finger protein 74)
          Length = 1043

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
 Frame = +2

Query: 77  KTAIQAKP--DSVYFVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARA--------TH 226
           K + + KP  +    V+ +  G   V   P   A P+F +K  D++KAR          H
Sbjct: 50  KDSFEGKPSLEQSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRH 109

Query: 227 ICLDCG 244
           +C  CG
Sbjct: 110 LCRICG 115

>SPRL_OCEIH (Q8ESK0) Protein sprT-like|
          Length = 150

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 134 GDIDVKRLPKRPAPPRFGRKLSDSQKA-RATHICLDCGYIY 253
           GD D K L K    PR    L   Q+  R  + C+ CG++Y
Sbjct: 87  GDRDFKELLKATGSPRHCSPLPSQQREYRYKYQCIQCGFVY 127

>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 88  PSKARLCILCSKQGWW*Y*CEAPAQE 165
           P K R C LCS++G   Y C AP  E
Sbjct: 258 PRKVRRCFLCSRRGHLLYSCPAPLCE 283

>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)|
          Length = 547

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 83  AIQAKPDSVY---FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICL 235
           A+ A PD+     F+ S GG D+DV+ +  R AP   GR++   +    T + L
Sbjct: 449 AVWADPDAFAPERFLPSEGGADVDVRGVDLRLAPFGAGRRVCPGKNLGLTTVGL 502

>RPOB_EHRRI (Q93MK8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1363

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +2

Query: 71   FTKTAIQAKPDSVYFVVSRGGGDIDVKRLPKRPAPPRFGRKL------SDSQKARATH-I 229
            F + AI  K  S+Y      G  +DVK L +R    + GR L       D++KAR  H +
Sbjct: 903  FGEKAIDVKDSSLYLPPGVSGCVVDVKVLQRR-GIEKVGRALLIEKQAIDAEKARRDHEL 961

Query: 230  CLDCGYIYFLPK 265
             +   YIY L K
Sbjct: 962  AVLTNYIYSLLK 973

>GYS1_HUMAN (P13807) Glycogen [starch] synthase, muscle (EC 2.4.1.11)|
          Length = 737

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 270 KGLGRKYMYPQSRQMCVALAFCESDNFRPNRGGA--GLLGRRFTSISPPPLLT 118
           K LGR YM   +R M ++ AF E   + PN   A  G    R  S+ P P L+
Sbjct: 599 KYLGRYYM--SARHMALSKAFPEHFTYEPNEADAAQGYRYPRPASVPPSPSLS 649

>LCMT2_MOUSE (Q8BYR1) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
           (p21WAF1/CIP1 promoter-interacting protein)
          Length = 686

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -1

Query: 180 RGGAGLLGRRFTSISP-PPLLTTKYTESGFAWMAVLVNPSLS-----AGHNSSPKKLLV* 19
           +GGA + G    S  P   +L  K   SGF W ++ + PS++       H  + K LLV 
Sbjct: 543 QGGALIAGGLGASEEPLSSVLFLKPVSSGFLWESIDIQPSITPRYSHTAHVFNGKLLLVG 602

Query: 18  STW 10
             W
Sbjct: 603 GVW 605


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,483,582
Number of Sequences: 219361
Number of extensions: 1026018
Number of successful extensions: 3040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3037
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)