| Clone Name | baal15m15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 22 cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81 |||| ||||||||||||||||||| ||||||||||||||| || |||||| || ||||| Sbjct: 26656132 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 26656073 Query: 82 ggaaccatgaacag 95 ||| ||||||||| Sbjct: 26656072 cgaatcatgaacag 26656059 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 178 tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237 |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| |||| Sbjct: 26655910 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 26655851 Query: 238 tt 239 || Sbjct: 26655850 tt 26655849
>dbj|AK064822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F01, full insert sequence Length = 2516 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 22 cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81 |||| ||||||||||||||||||| ||||||||||||||| || |||||| || ||||| Sbjct: 1521 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 1580 Query: 82 ggaaccatgaacag 95 ||| ||||||||| Sbjct: 1581 cgaatcatgaacag 1594 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 178 tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237 |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| |||| Sbjct: 1656 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 1715 Query: 238 tt 239 || Sbjct: 1716 tt 1717
>dbj|AK059703.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D03, full insert sequence Length = 2272 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 22 cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81 |||| ||||||||||||||||||| ||||||||||||||| || |||||| || ||||| Sbjct: 1277 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 1336 Query: 82 ggaaccatgaacag 95 ||| ||||||||| Sbjct: 1337 cgaatcatgaacag 1350 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 178 tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237 |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| |||| Sbjct: 1412 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 1471 Query: 238 tt 239 || Sbjct: 1472 tt 1473
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 22 cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81 |||| ||||||||||||||||||| ||||||||||||||| || |||||| || ||||| Sbjct: 26584301 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 26584242 Query: 82 ggaaccatgaacag 95 ||| ||||||||| Sbjct: 26584241 cgaatcatgaacag 26584228 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 178 tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237 |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| |||| Sbjct: 26584079 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 26584020 Query: 238 tt 239 || Sbjct: 26584019 tt 26584018
>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101173 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 22 cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81 |||| ||||||||||||||||||| ||||||||||||||| || |||||| || ||||| Sbjct: 75002 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 74943 Query: 82 ggaaccatgaacag 95 ||| ||||||||| Sbjct: 74942 cgaatcatgaacag 74929 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 178 tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237 |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| |||| Sbjct: 74780 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 74721 Query: 238 tt 239 || Sbjct: 74720 tt 74719
>ref|XM_469061.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2208 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 1334 gtttgagccaagaatatgatgaggaaa 1360
>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01, complete sequence Length = 161741 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Minus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 115311 gtttgagccaagaatatgatgaggaaa 115285
>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete sequence Length = 130193 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 83436 gtttgagccaagaatatgatgaggaaa 83462
>gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, complete sequence Length = 157984 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 57 aaggtggggagtcctcttggagatggg 83 |||||||||| |||||||||||||||| Sbjct: 44304 aaggtggggaatcctcttggagatggg 44330
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Minus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 25219272 gtttgagccaagaatatgatgaggaaa 25219246
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Minus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 25310644 gtttgagccaagaatatgatgaggaaa 25310618
>dbj|AK066471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066A08, full insert sequence Length = 2110 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 1243 gtttgagccaagaatatgatgaggaaa 1269
>dbj|AK066436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063A11, full insert sequence Length = 2455 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 31 gtttgagccaagaatgtgatgaggaaa 57 ||||||||||||||| ||||||||||| Sbjct: 1598 gtttgagccaagaatatgatgaggaaa 1624
>gb|AC157992.7| Mus musculus chromosome 8, clone RP23-302J17, complete sequence Length = 196519 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aagaatgtgatgaggaaaag 59 |||||||||||||||||||| Sbjct: 167385 aagaatgtgatgaggaaaag 167404
>gb|AC116121.8| Mus musculus chromosome 8, clone RP23-79K4, complete sequence Length = 216001 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aagaatgtgatgaggaaaag 59 |||||||||||||||||||| Sbjct: 26172 aagaatgtgatgaggaaaag 26191
>ref|XM_509440.1| PREDICTED: Pan troglodytes similar to hypothetical protein B930074I24 (LOC452322), mRNA Length = 649 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gccactcctggtgaggtgct 294 |||||||||||||||||||| Sbjct: 330 gccactcctggtgaggtgct 311
>ref|XM_367680.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG07591.4) partial mRNA Length = 306 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 agccaagaatgtgatgagga 55 |||||||||||||||||||| Sbjct: 39 agccaagaatgtgatgagga 20
>gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, complete sequence Length = 180766 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ccactcctggtgaggtgctt 295 |||||||||||||||||||| Sbjct: 97487 ccactcctggtgaggtgctt 97468
>gb|AC022559.12| Homo sapiens chromosome 8, clone RP11-404E12, complete sequence Length = 151033 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 agtcctcttggagatgggaa 85 |||||||||||||||||||| Sbjct: 107473 agtcctcttggagatgggaa 107454
>gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome 12, complete sequence Length = 149712 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tatacacaaataaattggat 182 |||||||||||||||||||| Sbjct: 105432 tatacacaaataaattggat 105451
>gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, complete sequence Length = 97951 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 agtcctcttggagatgggaa 85 |||||||||||||||||||| Sbjct: 37547 agtcctcttggagatgggaa 37528
>emb|AJ318529.1|PPU318529 Pseudomonas putida strain MU10-2 mercury resistance cassette mer2 (inserted into a Tn5041 variant, Tn5041D) Length = 8208 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gcctgcgtcttcggtggcct 316 |||||||||||||||||||| Sbjct: 1397 gcctgcgtcttcggtggcct 1378
>emb|CR792458.6| Zebrafish DNA sequence from clone RP71-47I2, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 aatcctgacggcttcggctt 261 |||||||||||||||||||| Sbjct: 112892 aatcctgacggcttcggctt 112873
>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence Length = 137411 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 ggggagtcctcttggagatgggaa 85 |||||| ||||||||||||||||| Sbjct: 135678 ggggaggcctcttggagatgggaa 135655
>gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, complete sequence Length = 142093 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 atctgtatgtgtgggggttc 240 |||||||||||||||||||| Sbjct: 45591 atctgtatgtgtgggggttc 45572
>gb|AC092306.2| Homo sapiens chromosome 19 clone LLNLR-231D4, complete sequence Length = 35144 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 ggggagtcctcttggagatgggaa 85 |||||| ||||||||||||||||| Sbjct: 2564 ggggaggcctcttggagatgggaa 2541
>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence Length = 77686 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tggagatgggaaccatgaac 93 |||||||||||||||||||| Sbjct: 64071 tggagatgggaaccatgaac 64052
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tatgtgtgggggttctaatc 245 |||||||||||||||||||| Sbjct: 81144 tatgtgtgggggttctaatc 81163
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tatgtgtgggggttctaatc 245 |||||||||||||||||||| Sbjct: 20679692 tatgtgtgggggttctaatc 20679711
>gb|AF120977.1|AF120977 Sphingomonas paucimobilis strain 660H mercury resistance operon 11, partial sequence Length = 842 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gcctgcgtcttcggtggcct 316 |||||||||||||||||||| Sbjct: 735 gcctgcgtcttcggtggcct 716
>gb|AF120976.1|AF120976 Sphingomonas paucimobilis strain 661H mercury resistance operon 11, partial sequence Length = 842 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gcctgcgtcttcggtggcct 316 |||||||||||||||||||| Sbjct: 735 gcctgcgtcttcggtggcct 716
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tatgtgtgggggttctaatc 245 |||||||||||||||||||| Sbjct: 20690964 tatgtgtgggggttctaatc 20690983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,628,576 Number of Sequences: 3902068 Number of extensions: 2628576 Number of successful extensions: 50053 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49946 Number of HSP's gapped (non-prelim): 107 length of query: 342 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 320 effective length of database: 17,147,199,772 effective search space: 5487103927040 effective search space used: 5487103927040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)