ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal15m15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
2dbj|AK064822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
3dbj|AK059703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 76 8e-11
5emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374... 76 8e-11
6ref|XM_469061.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.073
7gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome... 46 0.073
8gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genom... 46 0.073
9gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, compl... 46 0.073
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.073
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.073
12dbj|AK066471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.073
13dbj|AK066436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.073
14gb|AC157992.7| Mus musculus chromosome 8, clone RP23-302J17, com... 40 4.5
15gb|AC116121.8| Mus musculus chromosome 8, clone RP23-79K4, compl... 40 4.5
16ref|XM_509440.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 4.5
17ref|XM_367680.1| Magnaporthe grisea 70-15 chromosome III predict... 40 4.5
18gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, co... 40 4.5
19gb|AC022559.12| Homo sapiens chromosome 8, clone RP11-404E12, co... 40 4.5
20gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome... 40 4.5
21gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, comp... 40 4.5
22emb|AJ318529.1|PPU318529 Pseudomonas putida strain MU10-2 mercur... 40 4.5
23emb|CR792458.6| Zebrafish DNA sequence from clone RP71-47I2, com... 40 4.5
24gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, compl... 40 4.5
25gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, comp... 40 4.5
26gb|AC092306.2| Homo sapiens chromosome 19 clone LLNLR-231D4, com... 40 4.5
27gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, compl... 40 4.5
28gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 40 4.5
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
30gb|AF120977.1|AF120977 Sphingomonas paucimobilis strain 660H mer... 40 4.5
31gb|AF120976.1|AF120976 Sphingomonas paucimobilis strain 661H mer... 40 4.5
32gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 22       cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81
                |||| ||||||||||||||||||| |||||||||||||||  || |||||| || |||||
Sbjct: 26656132 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 26656073

                              
Query: 82       ggaaccatgaacag 95
                 ||| |||||||||
Sbjct: 26656072 cgaatcatgaacag 26656059



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 178      tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237
                |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| ||||
Sbjct: 26655910 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 26655851

                  
Query: 238      tt 239
                ||
Sbjct: 26655850 tt 26655849



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>dbj|AK064822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F01, full
            insert sequence
          Length = 2516

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                        
Query: 22   cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81
            |||| ||||||||||||||||||| |||||||||||||||  || |||||| || |||||
Sbjct: 1521 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 1580

                          
Query: 82   ggaaccatgaacag 95
             ||| |||||||||
Sbjct: 1581 cgaatcatgaacag 1594



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                        
Query: 178  tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237
            |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| ||||
Sbjct: 1656 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 1715

              
Query: 238  tt 239
            ||
Sbjct: 1716 tt 1717



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>dbj|AK059703.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D03, full
            insert sequence
          Length = 2272

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                        
Query: 22   cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81
            |||| ||||||||||||||||||| |||||||||||||||  || |||||| || |||||
Sbjct: 1277 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 1336

                          
Query: 82   ggaaccatgaacag 95
             ||| |||||||||
Sbjct: 1337 cgaatcatgaacag 1350



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                        
Query: 178  tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237
            |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| ||||
Sbjct: 1412 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 1471

              
Query: 238  tt 239
            ||
Sbjct: 1472 tt 1473



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 22       cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81
                |||| ||||||||||||||||||| |||||||||||||||  || |||||| || |||||
Sbjct: 26584301 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 26584242

                              
Query: 82       ggaaccatgaacag 95
                 ||| |||||||||
Sbjct: 26584241 cgaatcatgaacag 26584228



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 178      tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237
                |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| ||||
Sbjct: 26584079 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 26584020

                  
Query: 238      tt 239
                ||
Sbjct: 26584019 tt 26584018



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>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101173

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                         
Query: 22    cgtcgttccgtttgagccaagaatgtgatgaggaaaaggtggggagtcctcttggagatg 81
             |||| ||||||||||||||||||| |||||||||||||||  || |||||| || |||||
Sbjct: 75002 cgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatg 74943

                           
Query: 82    ggaaccatgaacag 95
              ||| |||||||||
Sbjct: 74942 cgaatcatgaacag 74929



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 178   tggatgagttaaagcggcgcaaaacagctgctcgcagcatagcatctgtatgtgtggggg 237
             |||| |||| |||||| || ||| |||||| | |||||||| ||||||||||||| ||||
Sbjct: 74780 tggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtagggg 74721

               
Query: 238   tt 239
             ||
Sbjct: 74720 tt 74719



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>ref|XM_469061.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2208

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 31   gtttgagccaagaatgtgatgaggaaa 57
            ||||||||||||||| |||||||||||
Sbjct: 1334 gtttgagccaagaatatgatgaggaaa 1360



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>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01,
              complete sequence
          Length = 161741

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 31     gtttgagccaagaatgtgatgaggaaa 57
              ||||||||||||||| |||||||||||
Sbjct: 115311 gtttgagccaagaatatgatgaggaaa 115285



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>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete
             sequence
          Length = 130193

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 31    gtttgagccaagaatgtgatgaggaaa 57
             ||||||||||||||| |||||||||||
Sbjct: 83436 gtttgagccaagaatatgatgaggaaa 83462



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>gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, complete sequence
          Length = 157984

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 57    aaggtggggagtcctcttggagatggg 83
             |||||||||| ||||||||||||||||
Sbjct: 44304 aaggtggggaatcctcttggagatggg 44330



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 31       gtttgagccaagaatgtgatgaggaaa 57
                ||||||||||||||| |||||||||||
Sbjct: 25219272 gtttgagccaagaatatgatgaggaaa 25219246



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 31       gtttgagccaagaatgtgatgaggaaa 57
                ||||||||||||||| |||||||||||
Sbjct: 25310644 gtttgagccaagaatatgatgaggaaa 25310618



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>dbj|AK066471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066A08, full
            insert sequence
          Length = 2110

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 31   gtttgagccaagaatgtgatgaggaaa 57
            ||||||||||||||| |||||||||||
Sbjct: 1243 gtttgagccaagaatatgatgaggaaa 1269



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>dbj|AK066436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063A11, full
            insert sequence
          Length = 2455

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 31   gtttgagccaagaatgtgatgaggaaa 57
            ||||||||||||||| |||||||||||
Sbjct: 1598 gtttgagccaagaatatgatgaggaaa 1624



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>gb|AC157992.7| Mus musculus chromosome 8, clone RP23-302J17, complete sequence
          Length = 196519

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aagaatgtgatgaggaaaag 59
              ||||||||||||||||||||
Sbjct: 167385 aagaatgtgatgaggaaaag 167404



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>gb|AC116121.8| Mus musculus chromosome 8, clone RP23-79K4, complete sequence
          Length = 216001

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aagaatgtgatgaggaaaag 59
             ||||||||||||||||||||
Sbjct: 26172 aagaatgtgatgaggaaaag 26191



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>ref|XM_509440.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           B930074I24 (LOC452322), mRNA
          Length = 649

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 gccactcctggtgaggtgct 294
           ||||||||||||||||||||
Sbjct: 330 gccactcctggtgaggtgct 311



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>ref|XM_367680.1| Magnaporthe grisea 70-15 chromosome III predicted protein
          (MG07591.4) partial mRNA
          Length = 306

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 36 agccaagaatgtgatgagga 55
          ||||||||||||||||||||
Sbjct: 39 agccaagaatgtgatgagga 20



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>gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, complete sequence
          Length = 180766

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   ccactcctggtgaggtgctt 295
             ||||||||||||||||||||
Sbjct: 97487 ccactcctggtgaggtgctt 97468



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>gb|AC022559.12| Homo sapiens chromosome 8, clone RP11-404E12, complete sequence
          Length = 151033

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     agtcctcttggagatgggaa 85
              ||||||||||||||||||||
Sbjct: 107473 agtcctcttggagatgggaa 107454



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>gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome 12, complete sequence
          Length = 149712

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    tatacacaaataaattggat 182
              ||||||||||||||||||||
Sbjct: 105432 tatacacaaataaattggat 105451



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>gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, complete sequence
          Length = 97951

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    agtcctcttggagatgggaa 85
             ||||||||||||||||||||
Sbjct: 37547 agtcctcttggagatgggaa 37528



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>emb|AJ318529.1|PPU318529 Pseudomonas putida strain MU10-2 mercury resistance cassette mer2
            (inserted into a Tn5041 variant, Tn5041D)
          Length = 8208

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  gcctgcgtcttcggtggcct 316
            ||||||||||||||||||||
Sbjct: 1397 gcctgcgtcttcggtggcct 1378



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>emb|CR792458.6| Zebrafish DNA sequence from clone RP71-47I2, complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aatcctgacggcttcggctt 261
              ||||||||||||||||||||
Sbjct: 112892 aatcctgacggcttcggctt 112873



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>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence
          Length = 137411

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 62     ggggagtcctcttggagatgggaa 85
              |||||| |||||||||||||||||
Sbjct: 135678 ggggaggcctcttggagatgggaa 135655



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>gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, complete sequence
          Length = 142093

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   atctgtatgtgtgggggttc 240
             ||||||||||||||||||||
Sbjct: 45591 atctgtatgtgtgggggttc 45572



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>gb|AC092306.2| Homo sapiens chromosome 19 clone LLNLR-231D4, complete sequence
          Length = 35144

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   ggggagtcctcttggagatgggaa 85
            |||||| |||||||||||||||||
Sbjct: 2564 ggggaggcctcttggagatgggaa 2541



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>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence
          Length = 77686

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tggagatgggaaccatgaac 93
             ||||||||||||||||||||
Sbjct: 64071 tggagatgggaaccatgaac 64052



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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
             sequence
          Length = 138824

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tatgtgtgggggttctaatc 245
             ||||||||||||||||||||
Sbjct: 81144 tatgtgtgggggttctaatc 81163



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      tatgtgtgggggttctaatc 245
                ||||||||||||||||||||
Sbjct: 20679692 tatgtgtgggggttctaatc 20679711



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>gb|AF120977.1|AF120977 Sphingomonas paucimobilis strain 660H mercury resistance operon 11,
           partial sequence
          Length = 842

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gcctgcgtcttcggtggcct 316
           ||||||||||||||||||||
Sbjct: 735 gcctgcgtcttcggtggcct 716



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>gb|AF120976.1|AF120976 Sphingomonas paucimobilis strain 661H mercury resistance operon 11,
           partial sequence
          Length = 842

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gcctgcgtcttcggtggcct 316
           ||||||||||||||||||||
Sbjct: 735 gcctgcgtcttcggtggcct 716



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      tatgtgtgggggttctaatc 245
                ||||||||||||||||||||
Sbjct: 20690964 tatgtgtgggggttctaatc 20690983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,628,576
Number of Sequences: 3902068
Number of extensions: 2628576
Number of successful extensions: 50053
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49946
Number of HSP's gapped (non-prelim): 107
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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