ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal15m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRK20_ARATH (Q93WV0) Probable WRKY transcription factor 20 (WRKY... 39 0.009
2WRKY4_ARATH (Q9XI90) Probable WRKY transcription factor 4 (WRKY ... 35 0.13
3WRKY3_ARATH (Q9ZQ70) Probable WRKY transcription factor 3 (WRKY ... 34 0.22
4SAV_DROME (Q9VCR6) Scaffold protein salvador (Shar-pei) 32 0.85
5CCD53_HUMAN (Q9Y3C0) Coiled-coil domain-containing protein 53 31 1.9
6FUMC_PSESM (Q885V0) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 30 2.5
7FUMC_PSEPK (Q88M20) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 30 2.5
8UL25_SHV21 (Q01004) Virion gene 19 protein 29 5.5
9FUMC_SYNY3 (Q55674) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 29 5.5
10NELFA_DROME (Q86NP2) Negative elongation factor A homolog 29 7.2
11SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 9.4
12SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 9.4
13FUMC2_BRAJA (Q89XM2) Fumarate hydratase class II 2 (EC 4.2.1.2) ... 28 9.4
14TEGU_EHV1B (P28955) Large tegument protein 28 9.4

>WRK20_ARATH (Q93WV0) Probable WRKY transcription factor 20 (WRKY DNA-binding|
           protein 20)
          Length = 557

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 7/165 (4%)
 Frame = +3

Query: 3   EPSPTTGSLGMAAILHKSAHPDMLPSPRDKSVRNAHEDRGSRDFEFKPHLNS-------S 161
           EPSPTTGSL     +H SA             +N   ++ S +FEF+P  ++        
Sbjct: 78  EPSPTTGSLFKPRPVHISASSSSYTGRGFH--QNTFTEQKSSEFEFRPPASNMVYAELGK 135

Query: 162 SQSLAPAMSDLKKHEHXXXXXXXXXXXXXXXXVNENRPPCSRESSLTVNVSAQNQPVGMV 341
            +S  P     + H                  ++   PPC                  M 
Sbjct: 136 IRSEPPVHFQGQGHGSSHSPSSISDAAGSSSELSRPTPPCQ-----------------MT 178

Query: 342 GLTDSMPAEVGTSEPQQMNSSDNAMQEPQSENVADKSADDGYNWR 476
             +  +PA     E  Q + +D+    P         ADDGYNWR
Sbjct: 179 PTSSDIPAGSDQEESIQTSQNDSRGSTPSI------LADDGYNWR 217



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>WRKY4_ARATH (Q9XI90) Probable WRKY transcription factor 4 (WRKY DNA-binding|
           protein 4)
          Length = 514

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 288 ESSLTVNVSAQNQPVGMVGLTDSMPAEVGTSEP--QQMNSSDNAMQEPQSENV--ADKSA 455
           +++  +    +  P   V    S  A++ TS P   Q  +SD  + E +S+     DK A
Sbjct: 169 QANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLNVDKPA 228

Query: 456 DDGYNWR 476
           DDGYNWR
Sbjct: 229 DDGYNWR 235



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>WRKY3_ARATH (Q9ZQ70) Probable WRKY transcription factor 3 (WRKY DNA-binding|
           protein 3)
          Length = 513

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 375 TSEPQQMNSSDNAMQEPQSENVADKSADDGYNWR 476
           TS+ Q+  S  +  +       ADK ADDGYNWR
Sbjct: 223 TSQGQRETSEISVFEHRSQPQNADKPADDGYNWR 256



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>SAV_DROME (Q9VCR6) Scaffold protein salvador (Shar-pei)|
          Length = 608

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -1

Query: 468 CSHHLPTCQQHFQTAALAWHCQSYSSAAAQMYQLQQACCQSNQPFQQVGSEHLHSL*DST 289
           C+   P+C+ H ++++ + +  S + +    Y  ++A  QS  P QQ    H HSL   +
Sbjct: 62  CASTSPSCEFHPRSSSTSRNTYSCTDSQPDYYHARRA--QSQMPLQQHSHSHPHSLPHPS 119

Query: 288 H 286
           H
Sbjct: 120 H 120



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>CCD53_HUMAN (Q9Y3C0) Coiled-coil domain-containing protein 53|
          Length = 194

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 306 NVSAQNQPVGMVGLTDSMPAEVGTSEPQQMNSSDNAMQEPQ--SENVADKSADDGY 467
           +V+ +  P+ +  +T+    E  + +PQQ ++ D+ +QE +  +EN+   + D  Y
Sbjct: 81  DVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVSAENILTVAKDPRY 136



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>FUMC_PSESM (Q885V0) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 464

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -2

Query: 440 NIFRLRLLHGIVRAIHLLRLRCTNFSRHAVS 348
           N+++  ++H ++++I LL   C+NF+ H V+
Sbjct: 357 NVYKPVIIHNVLQSIRLLADGCSNFNEHCVA 387



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>FUMC_PSEPK (Q88M20) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 464

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 440 NIFRLRLLHGIVRAIHLLRLRCTNFSRHAVS 348
           N+F+  ++H ++++I LL   C NF +H V+
Sbjct: 357 NVFKPVIIHNLLQSIELLADGCRNFQQHCVA 387



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>UL25_SHV21 (Q01004) Virion gene 19 protein|
          Length = 543

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 120 GSRDFEFKPHLNSSSQSLAPAMSDLKKHEH 209
           G   F F P +N ++ S+AP   D K  +H
Sbjct: 270 GGNGFSFSPQVNEATSSIAPPNKDTKYSQH 299



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>FUMC_SYNY3 (Q55674) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 466

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 440 NIFRLRLLHGIVRAIHLLRLRCTNFSRHAV 351
           N+F+  ++H  + ++HLL   C +F +H V
Sbjct: 360 NVFKPVIIHNFLHSLHLLSDACASFRQHLV 389



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>NELFA_DROME (Q86NP2) Negative elongation factor A homolog|
          Length = 1248

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 381 EPQQMNSSDNAMQEPQSENVADKS 452
           EPQQ+N S  +++EPQ + ++ K+
Sbjct: 341 EPQQLNQSAGSLEEPQDDEMSGKA 364



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>SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 864

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 291 SSLTVNVSAQNQPVGMVGLTDSMPAEVGTSEPQQMNSSDNAMQEPQ 428
           + +TV+   + +PVG V  +D  P E+G  E  +M+ S N   +PQ
Sbjct: 593 ADVTVSFDDKGRPVGAVLKSDGQPVELGGIE--KMSKSKNNGVDPQ 636



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>SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 864

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 291 SSLTVNVSAQNQPVGMVGLTDSMPAEVGTSEPQQMNSSDNAMQEPQ 428
           + +TV+   + +PVG V  +D  P E+G  E  +M+ S N   +PQ
Sbjct: 593 ADVTVSFDDKGRPVGAVLKSDGQPVELGGIE--KMSKSKNNGVDPQ 636



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>FUMC2_BRAJA (Q89XM2) Fumarate hydratase class II 2 (EC 4.2.1.2) (Fumarase C 2)|
          Length = 478

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 449 LVSNIFRLRLLHGIVRAIHLLRLRCTNFSRHAVSQTNHSNRLVLSTYI 306
           L  N+++  ++H I +++ +L   CTNF    V  T   NR  +  Y+
Sbjct: 356 LEMNVYKPLIIHNIAQSVTILTDGCTNFRTFLVEGT-EPNRKKIKEYV 402



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>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 276  PCSRESSLTVNVSAQNQPVGMVGLTDSM-PAEVGTSEPQQMNSSDN----AMQEPQSENV 440
            PCS E       + ++ PVG   ++ S  PA++ T+ PQ  N+S++    +++ P     
Sbjct: 3087 PCSEEPK---RPTGRDTPVGSWNVSPSQAPADIPTAIPQNQNTSESPRTTSLKSPTRTVQ 3143

Query: 441  ADKSADD 461
            +   ADD
Sbjct: 3144 SSMPADD 3150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,232,679
Number of Sequences: 219361
Number of extensions: 1182203
Number of successful extensions: 3349
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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