ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal15m10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1 (Na(+)... 30 1.3
2YG3J_YEAST (P48234) Hypothetical WD-repeat protein in MOL1-NAT2 ... 28 8.6

>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1216

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 187 QIHIHHQTRKRASETAASTDHVSVRSPLP 101
           Q+ I   TR   +ET ASTD   VR+PLP
Sbjct: 322 QVTISTMTRSSPTETKASTDAWKVRNPLP 350



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>YG3J_YEAST (P48234) Hypothetical WD-repeat protein in MOL1-NAT2 intergenic|
           region
          Length = 707

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 130 LYSQQSLMPSFLSDDGCGFDIKK 198
           +Y  ++  PS + D G GFDIKK
Sbjct: 254 IYDLRTSEPSIIKDQGYGFDIKK 276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,013,313
Number of Sequences: 219361
Number of extensions: 487189
Number of successful extensions: 1418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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