>MSH6_DROME (Q9VUM0) Probable DNA mismatch repair protein MSH6|
          Length = 1190

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 209  PSERNGGSFSTEKLRDRLHAEGVGAEIVKDCEQIVHSEFSQYHVQMKQ--RCESYLSFIG 382
            PS R   + +   L+D  HAE     ++KD  + +  +FS ++ Q KQ   C + L  +G
Sbjct: 838  PSRRYTTAETRALLKDMQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLG 897

Query: 383  SL 388
            SL
Sbjct: 898  SL 899

>ITSN2_HUMAN (Q9NZM3) Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18)|
            (SH3P18-like WASP-associated protein)
          Length = 1696

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +2

Query: 26   PIGIRPLKISSFSESKSDDKRFYIITPTKTLQLRTGCVKDRVAWIEALVSARSEY 190
            PI +  + +   ++  SD+  F+I    +   LRT  + +R AW++ + +A  +Y
Sbjct: 1491 PIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQY 1545

>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/84 (23%), Positives = 38/84 (45%)
 Frame = +2

Query: 179  RSEYSLGAILPSERNGGSFSTEKLRDRLHAEGVGAEIVKDCEQIVHSEFSQYHVQMKQRC 358
            + EY   A L  + N G F  +K +++L  E +   I +   Q + S+F +  ++ +   
Sbjct: 1855 KKEYLFSANLQKKNNYGQFIEKKKKEQLLYERILPRIRRRNVQELESQFEEILLEEQFEI 1914

Query: 359  ESYLSFIGSLPRELELIQKMQLFM 430
              +       P E +L  K +LF+
Sbjct: 1915 LGFFRLSEQYPMEYQLYNKPRLFI 1938

>TYPH_PYRKO (Q5JCX3) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 503

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 403 VNSEDATIHGNPQSQLFKPDLSS--SGKCSEYSNTESSDDAGKQEIGIMSDEDEFHFYDT 576
           +N EDA      +++L   DL    +GK + Y +   S+  GK E+GI  D  + H +  
Sbjct: 19  INEEDAK-----EAKLHPDDLVKIEAGKKAVYGSVALSNLVGKGEVGISRDVLDLHNFSE 73

Query: 577 RQSFSEGVASPDLKVRYL 630
            ++ S   A     VRY+
Sbjct: 74  GETVSVIPAGTPESVRYI 91

>CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)|
          Length = 1703

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 32  GIRPLKISSFSESKSDDKRFYIITPTKTLQLRTGCVKDRVAWIEALVSARSEYSLGAIL 208
           GI PL   S   ++ D+K F I+T  +T   R    ++R  WI  L+SA    SL + L
Sbjct: 523 GIIPLTAISTVRAQGDNK-FEIVTTQRTFVFRVEKEEERNDWISILLSALKSPSLASQL 580

>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase|
           substrate
          Length = 760

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 287 IVKDCEQIVHSEFSQYHVQMKQRCESYLSFIGSLPRE------LELIQ 412
           IVK+C   VH E     V  K+ CE + SF+ S P E      LEL+Q
Sbjct: 69  IVKNCGAPVHEE-----VFTKENCEMFSSFLESTPHENVRQKMLELVQ 111

>KRAC_DICDI (P54644) RAC-family serine/threonine-protein kinase homolog (EC|
           2.7.11.1)
          Length = 444

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 26  PIGIRPLKISSFSESKSDDKR---FYIITPTKTLQLRTGCVKDRVAWIEALVSAR 181
           P+G+  L  S   ++    KR   F + TP++T  L +   ++R  WIE L++ R
Sbjct: 45  PLGVIHLNTSGHIKNSDRKKRVNGFEVQTPSRTYFLCSETEEERAKWIEILINER 99

>ITSN2_MOUSE (Q9Z0R6) Intersectin-2 (SH3 domain-containing protein 1B) (EH and SH3|
            domains protein 2) (EH domain and SH3 domain regulator of
            endocytosis 2)
          Length = 1658

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +2

Query: 11   RAGERPIGIRPLKISSFSESKSDDKRFYIITPTKTLQLRTGCVKDRVAWIEALVSARSEY 190
            R  + PI +  + +   ++   D+  F+I    +   LRT  + +R AW++ +  A  +Y
Sbjct: 1448 RMYKTPIFLNEVLVKLPTDPSGDEPVFHISHIDRVYTLRTDNINERTAWVQKIKGASEQY 1507

>UTP14_YEAST (Q04500) U3 small nucleolar RNA-associated protein 14 (U3|
           snoRNA-associated protein 14)
          Length = 899

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 406 NSEDATIHGNPQSQLFKPDLSSSGKCSEYSNTESSDDAGKQEIGIMSDEDE 558
           + EDA+    PQ +L   D+SS    SE S +ES DD  +++      EDE
Sbjct: 146 DDEDAS----PQLKLQDTDISSESSSSEESESESEDDEEEEDPFDEISEDE 192

>CEND2_HUMAN (Q96P48) Centaurin-delta 2 (Cnt-d2) (Arf-GAP, Rho-GAP, ankyrin|
           repeat and pleckstrin homology domain-containing protein
           1)
          Length = 1210

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
 Frame = +2

Query: 80  DKRFYIITPTKTLQLRTGCVKDRVAWIEALVSARSEYSLGAILPS-----------ERNG 226
           D++F +IT  +T   R     +R  W++AL  A +E    A L S               
Sbjct: 145 DQKFEVITNNRTFAFRAESDVERKEWMQALQQAMAEQRARARLSSAYLLGVPGSEQPDRA 204

Query: 227 GSFSTEKLRDRLHAEGVGAEIVKDCEQIVHSEFSQYHV 340
           GS      +++L+   VG ++       ++    +YH+
Sbjct: 205 GSLELRGFKNKLYVAVVGDKVQ------LYKNLEEYHL 236

>MSBA_LEGPH (Q5ZUH9) Lipid A export ATP-binding/permease protein msbA|
          Length = 588

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
 Frame = +2

Query: 95  IITPTKTLQLRTGCVKDRVAWIEALVSARSEYSLGAILPSERNGGSFSTEKLRDRL---- 262
           +I P KTL      ++        L  A S ++L   LP ERN G    EK+R  +    
Sbjct: 294 LIKPMKTLTTLNATIQ------RGLAGAESVFNL-LDLPLERNNGLILKEKIRGEIEFKH 346

Query: 263 --HAEGVGAEIVKDCEQIVHSEFSQYHVQMKQRCESYLSFIGS-LPRELELIQKM 418
             HA   G  I+ D   ++ +  S   V +     S  + I S LPR  EL Q M
Sbjct: 347 VYHAYRQGQNILHDVNFVIEAGTS---VALVGHSGSGKTTIASLLPRFYELSQGM 398


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,616,953
Number of Sequences: 219361
Number of extensions: 1684502
Number of successful extensions: 4323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4320
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)