>GCH3_SULSO (Q980B6) GTP cyclohydrolase III (EC 3.5.4.29)|
          Length = 231

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 24/90 (26%), Positives = 41/90 (45%)
 Frame = +2

Query: 71  IRLLSCKLEGSPLVEAQNDKFSASMVNRVFCNNNSDDSTLQQLTSDATIEVAIDIPFPFQ 250
           +R+ SC   G   +EAQ         N   C NN DD+ +++ T +    +  DI F  +
Sbjct: 81  VRIKSCLGYGKTPLEAQ--------WNASICLNNQDDNEIKEYTDEKIAALHFDINFNTE 132

Query: 251 ALPVEAIESSGRQVLEQLLRVMLPRFLKQL 340
            L   ++  S  ++    + V L RFL ++
Sbjct: 133 TLKYTSVYDSFIEITN--IYVNLSRFLYKI 160

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 194  VEASSHLNCCCRKPYSPWKRRICHSAPPQGATPP 93
            VEA +  NCC R P +  +    H APP G +PP
Sbjct: 4796 VEACTCFNCCSRGPTAELRT---HPAPPSGLSPP 4826

>TRI32_HUMAN (Q13049) Tripartite motif protein 32 (EC 6.3.2.-) (Zinc-finger|
           protein HT2A) (72 kDa Tat-interacting protein)
          Length = 653

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +2

Query: 23  CPVLLVRVDEEPNGCCIRLLSCKLEGSPLVEAQNDKFSASMVNRV---FCNNNSDDSTLQ 193
           CP+ +    EE      +LL C   G  +     +K  AS +N V   FC+  +  ++L 
Sbjct: 20  CPICMESFTEEQ--LRPKLLHC---GHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 74

Query: 194 QLTSDATIEVAIDIPFPFQALPVEAIESSGRQVLEQLLR 310
           QLT + T+   ID     +A+ +    S GR++  Q  R
Sbjct: 75  QLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCR 113

>ZN690_HUMAN (Q8IWY8) Zinc finger protein 690|
          Length = 851

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
 Frame = +2

Query: 5   GFALEVCP-------VLLVRVDEEPNGCCIRLLSCKLEGSPLVEAQNDKFSASMVNRVFC 163
           G A E CP       ++ VRV   PN       SC ++G+   EAQ     A        
Sbjct: 477 GQAPETCPFFEEMDALVSVRVAAPPNDGQEETASCPVQGTSEAEAQKQAEEADEATEEDS 536

Query: 164 NNNSDDSTLQQLTSDATIEVAIDIPFPFQALPVEAIESSGRQVLE--QLLRVML------ 319
           +++ +D+ +          V    P  F+A   E  ++S R + E  QL R +L      
Sbjct: 537 DDDEEDTEIPPGAVITRAPVLFQSPRGFEA-GFENEDNSKRDISEEVQLHRTLLARSERK 595

Query: 320 -PRFLKQ 337
            PR+L Q
Sbjct: 596 IPRYLHQ 602

>DNAK_RICCN (Q92J36) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 627

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/101 (22%), Positives = 42/101 (41%)
 Frame = +2

Query: 98  GSPLVEAQNDKFSASMVNRVFCNNNSDDSTLQQLTSDATIEVAIDIPFPFQALPVEAIES 277
           G   VEA N+K+S S ++        +  T +    D   +  I +P  F     +A + 
Sbjct: 98  GDAWVEADNNKYSPSQISAFILQKMKE--TAENYLGDKVTQAVITVPAYFNDAQRQATKD 155

Query: 278 SGRQVLEQLLRVMLPRFLKQLDKDYQAWASGDSSRKPLGTG 400
           +G+    ++LR++       L   ++  AS   +   LG G
Sbjct: 156 AGKIAGLEVLRIINEPTAAALAYGFEKSASKTIAVYDLGGG 196

>TRI32_MOUSE (Q8CH72) Tripartite motif protein 32 (EC 6.3.2.-)|
          Length = 655

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +2

Query: 23  CPVLLVRVDEEPNGCCIRLLSCKLEGSPLVEAQNDKFSASMVNRV---FCNNNSDDSTLQ 193
           CP+ +    EE      +LL C   G  +     +K  AS +N V   FC+  +  ++L 
Sbjct: 21  CPICMESFTEEQ--LRPKLLHC---GHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 75

Query: 194 QLTSDATIEVAIDIPFPFQALPVEAIESSGRQVLEQLLR 310
           QLT + T+   ID     +A+ +      GR++  Q  R
Sbjct: 76  QLTDNLTVLKIIDTAGLSEAVGLLMCRGCGRRLPRQFCR 114

>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2330

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 167 CCRKPYSPWKRRICHSAPPQGATPPAC 87
           C R P   W +  C +APP G    AC
Sbjct: 112 CSRDPECSWCQGACQAAPPPGTPSGAC 138

>KHSE_BACSU (P04948) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 309

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 89  KLEGSPLVEAQNDKFSASMVNRVFCNNNSDDSTLQQLTSDATIEVAIDIPF 241
           KL  + L E   D   AS+V  +    + DD T      +A I+V + IPF
Sbjct: 123 KLHLASLEEGHPDNAGASLVGGLVIGLHEDDETQMIRVPNADIDVVVVIPF 173

>INMT_PONPY (Q5RFR7) Indolethylamine N-methyltransferase (EC 2.1.1.49)|
           (Aromatic alkylamine N-methyltransferase) (Indolamine
           N-methyltransferase) (Arylamine N-methyltransferase)
           (Amine N-methyltransferase)
          Length = 263

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +2

Query: 95  EGSPLVEAQNDKFSASMVNRVFCNNNSDDSTLQQLTSDATIEVAIDIPFPFQALPVEAIE 274
           +GSP  EA+  KF+   +++ F        TL  + S  TI   +     FQ + +    
Sbjct: 28  DGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACESFQDITLSDFT 87

Query: 275 SSGRQVLEQLLR 310
              R+ LE+ L+
Sbjct: 88  DRNREELEKWLK 99

>INMT_HUMAN (O95050) Indolethylamine N-methyltransferase (EC 2.1.1.49)|
           (Aromatic alkylamine N-methyltransferase) (Indolamine
           N-methyltransferase) (Arylamine N-methyltransferase)
           (Amine N-methyltransferase)
          Length = 263

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +2

Query: 95  EGSPLVEAQNDKFSASMVNRVFCNNNSDDSTLQQLTSDATIEVAIDIPFPFQALPVEAIE 274
           +GSP  EA+  KF+   +++ F        TL  + S  TI   +     FQ + +    
Sbjct: 28  DGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFT 87

Query: 275 SSGRQVLEQLLR 310
              R+ LE+ L+
Sbjct: 88  DRNREELEKWLK 99

>APU_THEET (P38939) Amylopullulanase precursor (Alpha-amylase/pullulanase)|
           [Includes: Alpha-amylase (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase); Pullulanase (EC
           3.2.1.41) (1,4-alpha-D-glucan glucanohydrolase)
           (Alpha-dextrin endo-1,6-alpha-glucosida
          Length = 1481

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 311 VMLPRFLKQLDKD---YQAWASGDSSRKPLG 394
           +   R+ K LD +   YQAW  GD S+ P G
Sbjct: 530 IYFDRYGKYLDNELGAYQAWKQGDQSKSPYG 560

>RRP3_DEBHA (Q6BQ61) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 477

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 171 IQMTRRFNSLHRMLQSRLQLTFPFRFKHYQLKLLNQVAGKCLSSYSESCFHDF*SSLIRT 350
           + ++ ++ +   ++QS + ++  ++   Y + LLN+  GK +  ++ +C H   ++L+  
Sbjct: 267 VAVSNKYQTADNLVQSMMLVSDGYK-NTYLIHLLNEFLGKSIIIFTRTCAHSQRTALLAR 325

Query: 351 TKLGLRAI-LHG 383
             LG  A+ LHG
Sbjct: 326 I-LGFSAVPLHG 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,475,775
Number of Sequences: 219361
Number of extensions: 1386367
Number of successful extensions: 3887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3884
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)